Return to ChangeLog CVS log

Up to [Local Repository] / imach / src

Annotation of imach/src/ChangeLog, revision 1.15

1.15    ! brouard     1: 2006-01-30  BROUARD Nicolas  <brouard@localhost>
        !             2: 
        !             3:        * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
        !             4: 
        !             5: 2006-01-27  BROUARD Nicolas  <brouard@localhost>
        !             6: 
        !             7:        * noreg-setup.iss (Module): ADDED
        !             8: 
        !             9: 2006-01-24  BROUARD Nicolas  <brouard@localhost>
        !            10: 
        !            11:        * imach.c (Module): Comments (lines starting with a #) are allowed in data.
        !            12: 
1.14      brouard    13: 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
                     14: 
                     15:        * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
                     16: 
                     17:        * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
                     18: 
1.12      lievre     19: 2005-09-30    <lievre@PC_00595>
                     20: 
                     21:        * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13      lievre     22:        (Module): If the status is missing at the last wave but we know
                     23:        that the person is alive, then we can code his/her status as -2
                     24:        (instead of missing=-1 in earlier versions) and his/her
                     25:        contributions to the likelihood is 1 - Prob of dying from last
                     26:        health status (= 1-p13= p11+p12 in the easiest case of somebody in
                     27:        the healthy state at last known wave). Version is 0.98 
1.12      lievre     28: 
1.11      brouard    29: 2004-05-20  Brouard Nicolas  <brouard@localhost>
                     30: 
                     31:        * imach.c (Repository): 
                     32:        Agnes added a direct estimation of mortality (without the need of
                     33:        computing period prevalence and differential mortality). Thus here
                     34:        is version 0.97a which has been distributed to some people at
                     35:        REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
                     36:        mortality using covariates is not done today. Estimating direct
                     37:        mortality is a very different process because it doesn't need
                     38:        interpolation because it is easy to get the lx from the force of
                     39:        the mortality mux in the simplest case as for a Gompertz (log mux
                     40:        = a + b*x . But we have been able to incorporate the new code
                     41:        within former imach program (0.96d) without deteriorating too much
                     42:        the understanding of the program. 
                     43: 
1.10      brouard    44: 2003-06-25    <brouard@BROUARD>
                     45: 
                     46:        * imach.c (Module): On windows (cygwin) function asctime_r doesn't
                     47:        exist so I changed back to asctime which exists.
                     48:        (Module): Version 0.96b
                     49: 
                     50: 2003-06-24    <brouard@BROUARD>
                     51: 
                     52:        * imach.c (Module): Some bugs corrected for windows. Also, when
                     53:        mle=-1 a template is output in file "or"mypar.txt with the design
                     54:        of the covariance matrix to be input.
                     55: 
1.9       brouard    56: 2003-06-25  Brouard Nicolas  <brouard@homebrou>
                     57: 
                     58:        * imach.c (Repository): Duplicated warning errors corrected.
                     59:        (Repository): Elapsed time after each iteration is now output. It
                     60:        helps to forecast when convergence will be reached. Elapsed time
                     61:        is stamped in powell.  We created a new html file for the graphs
                     62:        concerning matrix of covariance. It has extension -cov.htm.
                     63: 
1.8       brouard    64: 2003-06-23  Brouard Nicolas  <brouard@homebrou>
                     65: 
                     66:        * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
                     67: 
                     68: 2003-06-18  Brouard Nicolas  <brouard@homebrou>
                     69: 
                     70:        * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
                     71: 
1.7       brouard    72: 2003-06-17  Brouard Nicolas  <brouard@homebrou>
                     73: 
                     74: 
                     75:        * imach.c (Repository): Check when date of death was earlier that
                     76:        current date of interview. It may happen when the death was just
                     77:        prior to the death. In this case, dh was negative and likelihood
                     78:        was wrong (infinity). We still send an "Error" but patch by
                     79:        assuming that the date of death was just one stepm after the
                     80:        interview.
                     81:        (Repository): Because some people have very long ID (first column)
                     82:        we changed int to long in num[] and we added a new lvector for
                     83:        memory allocation. But we also truncated to 8 characters (left
                     84:        truncation)
                     85: 
                     86:        (Repository): No more line truncation errors.
                     87: 
                     88: 2003-06-14  Brouard Nicolas  <brouard@homebrou>
                     89: 
                     90:        * imach.c (Repository): Add of a routine likelione (likelihood
                     91:        only once) which prints on a text file
                     92:        (ilk) the contributions to the likelihood for each
                     93:        individual/wave.
                     94: 
                     95: 2003-06-13  Brouard Nicolas  <brouard@homebrou>
                     96:        * imach.c (Repository): Replace "freqsummary" at a correct
                     97:        place. It differs from routine "prevalence" which may be called
                     98:        many times. Probs is memory consuming and must be used with
                     99:        parcimony.
                    100: 
                    101: 2003-06-17    <brouard@BROUARD>
                    102: 
                    103:        * timeval.h (Module): Added included file to make use of
                    104:        gettimeofday working on win32 with cygwin.
                    105: 
                    106: 2003-05-16  Brouard Nicolas  <brouard@brouard>
                    107:        * imach.c (Module): Insert of a warning if the delay between two
                    108:        waves is negative.
                    109: 
                    110:        * imach.c (Module): 
                    111: 
                    112: 2003-05-03    <brouard@BROUARD>
                    113: 
                    114:        * imach.c: Some cleaning
                    115: 
                    116: 2003-03-28    <brouard@BROUARD>
                    117:        * imach.c (Module): In version up to 0.92 likelihood was computed
                    118:        as if date of death was unknown. Death was treated as any other
                    119:        health state: the date of the interview describes the actual state
                    120:        and not the date of a change in health state. The former idea was
                    121:        to consider that at each interview the state was recorded
                    122:        (healthy, disable or death) and IMaCh was corrected; but when we
                    123:        introduced the exact date of death then we should have modified
                    124:        the contribution of an exact death to the likelihood. This new
                    125:        contribution is smaller and very dependent of the step unit
                    126:        stepm. It is no more the probability to die between last interview
                    127:        and month of death but the probability to survive from last
                    128:        interview up to one month before death multiplied by the
                    129:        probability to die within a month. Thanks to Chris
                    130:        Jackson for correcting this bug.  Former versions increased
                    131:        mortality artificially. The bad side is that we add another loop
                    132: 
                    133: 
                    134:        which slows down the processing. The difference can be up to 10%
                    135: 
                    136: 
                    137:        lower mortality.
                    138: 
                    139: 
                    140: 
                    141: 
                    142: 
                    143: 2002-05-30    <brouard@BROUARD>
                    144: 
                    145: 
                    146: 
                    147: 
                    148: 
                    149:        * 
                    150: 
                    151: 
                    152: 
                    153: 
                    154: 
                    155:        * imach.c (Module): Add correlation matrix of one-step
                    156: 
                    157: 
                    158:        probabilities and covariance matrix
                    159: 
                    160: 
                    161: 
                    162: 
                    163: