Annotation of imach/src/ChangeLog, revision 1.42

1.42    ! brouard     1: 2021-02-12  Nicolas Brouard   <brouard@ined.fr>
        !             2: 
        !             3:        * imach.c (Module): The use of a Windows BOM (huge) file is now an error
        !             4: 
        !             5: 
        !             6: 2021-02-11  Nicolas  Brouard   <brouard@ined.fr>
1.41      brouard     7: 
                      8:        *  (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
                      9: 
1.42    ! brouard    10: 2020-02-22  Brouard Nicolas  <brouard@ined.fr>
1.40      brouard    11: 
                     12:        *  (Module): imach.c Update mle=-3 (for computing Life expectancy
                     13:        and life table from the data without any state)
                     14: 
1.42    ! brouard    15: 2019-05-20  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    16: 
                     17:        * version.h: Summary: version 0.99.r19
                     18: 
                     19:        * imach.c: Summary: Projection syntax simplified
                     20:        We can now start projections, forward or backward, from the mean date
                     21:        of inteviews up to or down to a number of years of projection:
                     22:        prevforecast=1 yearsfproj=15.3 mobil_average=0
                     23:        or
                     24:        prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
                     25:        or
                     26:        prevbackcast=1 yearsbproj=12.3 mobil_average=1
                     27:        or
                     28:        prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
                     29: 
1.42    ! brouard    30: 2019-05-18  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    31: 
                     32:        * imach.c: Summary: doxygen tex bug
                     33: 
1.42    ! brouard    34: 2019-05-16  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    35: 
                     36:        * imach.c: Summary: There was some wrong lines added
                     37: 
1.42    ! brouard    38: 2019-05-09  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    39: 
                     40:        * Makefile, imach.c: *** empty log message ***
                     41: 
                     42:        * ChangeLog: Summary: C=
                     43: 
                     44:        * imach.c: Summary: Some updates
                     45: 
                     46:        * imach.c: Summary: Before ncovmax
                     47: 
                     48:        * version.h: *** empty log message ***
                     49: 
                     50:        * imach.c: Summary: 0.99r18 unlimited number of individuals
                     51:        The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
                     52: 
1.42    ! brouard    53: 2018-12-13  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    54: 
                     55:        * imach.c: Summary: Bug for young ages (<-30) will be in r17
                     56: 
1.42    ! brouard    57: 2018-12-05  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    58: 
                     59:        * Makefile: Summary: 0.99r16
                     60: 
1.42    ! brouard    61: 2018-05-02  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    62: 
                     63:        * imach.c: Summary: Some bugs fixed
                     64: 
1.42    ! brouard    65: 2018-05-02  Brouard Nicolas  <brouard@ined.fr>
1.39      brouard    66: 
                     67:        * imach.c:  Summary: Bug for young ages (<-30) will be in r17
                     68: 
1.42    ! brouard    69: 2018-05-02  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard    70: 
                     71:        * imach.c: Summary: Some bugs fixed
                     72: 
1.42    ! brouard    73: 2018-05-01  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard    74: 
                     75:        * imach.c:
                     76:        Summary: Bug fixed by providing frequencies only for non missing covariates
                     77: 
1.42    ! brouard    78: 2018-04-27  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard    79: 
                     80:        * imach.c: Summary: some minor bugs
                     81: 
1.42    ! brouard    82: 2018-04-21  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard    83: 
                     84:        * README.txt: *** empty log message ***
                     85: 
                     86:        * imach.c: Summary: Some bugs fixed, valgrind tested
                     87: 
1.42    ! brouard    88: 2018-04-20  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard    89: 
                     90:        * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
                     91: 
                     92:        * imach.c:
                     93:        Summary: Computing mean and stdeviation of fixed quantitative variables
                     94: 
1.42    ! brouard    95: 2018-04-19  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard    96: 
                     97:        * imach.c: Summary: Some minor bugs fixed
                     98: 
                     99:        * version.h: *** empty log message ***
                    100: 
1.42    ! brouard   101: 2018-02-27  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   102: 
                    103:        * imach.c: *** empty log message ***
                    104: 
                    105:        * imach.c: Summary: Adding second argument for quitting
                    106: 
1.42    ! brouard   107: 2018-02-21  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   108: 
                    109:        * Makefile, README.txt, imach.c: Summary: 0.99r15
                    110:        New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
                    111: 
1.42    ! brouard   112: 2017-07-20  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   113: 
                    114:        * imach.c: Summary: temporary working
                    115: 
1.42    ! brouard   116: 2017-07-19  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   117: 
                    118:        * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
                    119: 
1.42    ! brouard   120: 2017-07-17  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   121: 
                    122:        * imach.c: Summary: BOM files can be read now
                    123: 
1.42    ! brouard   124: 2017-06-30  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   125: 
                    126:        * imach.c: Summary: Graphs improvements
                    127: 
                    128:        * imach.c: Summary: Saito's color
                    129: 
1.42    ! brouard   130: 2017-06-29  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   131: 
                    132:        * imach.c: Summary: Version 0.99r14
                    133: 
1.42    ! brouard   134: 2017-06-27  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   135: 
                    136:        * imach.c: Summary: More documentation on projections
                    137: 
                    138:        * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
                    139: 
                    140:        * imach.c: Summary: Some bug with rint
                    141: 
1.42    ! brouard   142: 2017-05-24  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   143: 
                    144:        * imach.c: *** empty log message ***
                    145: 
1.42    ! brouard   146: 2017-05-23  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   147: 
                    148:        * imach.c: Summary: Code into subroutine, cleanings
                    149: 
1.42    ! brouard   150: 2017-05-18  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   151: 
                    152:        * imach.c:
                    153:        Summary: backprojection and confidence intervals of backprevalence
                    154: 
1.42    ! brouard   155: 2017-05-13  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   156: 
                    157:        * imach.c: Summary: temporary save for backprojection
                    158: 
                    159:        * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
                    160: 
1.42    ! brouard   161: 2017-04-26  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   162: 
                    163:        * imach.c: Summary: imach 0.99r13 Some bugs fixed
                    164: 
                    165:        * imach.c: Summary: Labels in graphs
                    166: 
1.42    ! brouard   167: 2017-04-24  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   168: 
                    169:        * imach.c: Summary: to save
                    170: 
1.42    ! brouard   171: 2017-04-18  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   172: 
                    173:        * imach.c: *** empty log message ***
                    174: 
1.42    ! brouard   175: 2017-04-05  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   176: 
                    177:        * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
                    178: 
1.42    ! brouard   179: 2017-04-04  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   180: 
                    181:        * imach.c: Summary: Gnuplot indexations fixed (humm)
                    182: 
                    183:        * imach.c:
                    184:        Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
                    185: 
1.42    ! brouard   186: 2017-04-03  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   187: 
                    188:        * imach.c: Summary: Version 0.99r12
                    189:        Some cleanings, conformed with updated documentation.
                    190: 
1.42    ! brouard   191: 2017-03-30  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   192: 
                    193:        * version.h: *** empty log message ***
                    194: 
                    195:        * version.h: Summary:0.99r11
                    196: 
1.42    ! brouard   197: 2017-03-29  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   198: 
                    199:        * imach.c: Summary: Temp
                    200: 
1.42    ! brouard   201: 2017-03-27  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   202: 
                    203:        * imach.c: Summary: Temporary
                    204: 
1.42    ! brouard   205: 2017-03-08  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   206: 
                    207:        * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
                    208: 
                    209:        * imach.c: Summary: Fixing data parameter line
                    210: 
1.42    ! brouard   211: 2016-12-15  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   212: 
                    213:        * imach.c: Summary: 0.99 in progress
                    214: 
1.42    ! brouard   215: 2016-09-15  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   216: 
                    217:        * imach.c: *** empty log message ***
                    218: 
                    219:        * imach.c: Summary: not working
                    220: 
1.42    ! brouard   221: 2016-09-08  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   222: 
                    223:        * imach.c: Summary: continue
                    224: 
1.42    ! brouard   225: 2016-09-07  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   226: 
                    227:        * imach.c: Summary: Starting values from frequencies
                    228: 
                    229:        * imach.c: *** empty log message ***
                    230: 
1.42    ! brouard   231: 2016-09-02  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   232: 
                    233:        * imach.c: *** empty log message ***
                    234: 
1.42    ! brouard   235: 2016-08-30  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   236: 
                    237:        * imach.c: Summary: Fixing a lots
                    238: 
1.42    ! brouard   239: 2016-08-29  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   240: 
                    241:        * imach.c: Summary: gnuplot problem in Back projection to fix
                    242: 
                    243:        * imach.c: Summary: Better
                    244: 
1.42    ! brouard   245: 2016-08-26  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   246: 
                    247:        * imach.c:
                    248:        Summary: Improvement in Powell output in order to copy and paste
                    249: 
                    250:        * imach.c: Summary: Starting tests of 0.99
                    251: 
                    252:        * imach.c: Summary: to valgrind
                    253: 
1.42    ! brouard   254: 2016-08-25  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   255: 
                    256:        * imach.c: *** empty log message ***
                    257: 
1.42    ! brouard   258: 2016-08-23  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   259: 
                    260:        * imach.c: *** empty log message ***
                    261: 
                    262:        * imach.c: Summary: not working
                    263: 
1.42    ! brouard   264: 2016-08-22  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   265: 
                    266:        * imach.c: Summary: not working
                    267: 
                    268:        * imach.c: Summary: Not working
                    269: 
1.42    ! brouard   270: 2016-07-23  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   271: 
                    272:        * imach.c: Summary: Completing for func too
                    273: 
1.42    ! brouard   274: 2016-07-22  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   275: 
                    276:        * imach.c: Summary: Fixing some arrays, still debugging
                    277: 
1.42    ! brouard   278: 2016-07-21  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   279: 
                    280:        * imach.c:
                    281:        Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
                    282: 
1.42    ! brouard   283: 2016-07-12  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   284: 
                    285:        * imach.c: Summary: temp
                    286: 
                    287:        * imach.c: Summary: saving but not running
                    288: 
1.42    ! brouard   289: 2016-07-01  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   290: 
                    291:        * imach.c: Summary: Fixes
                    292: 
1.42    ! brouard   293: 2016-02-19  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   294: 
                    295:        * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
                    296: 
                    297:        * setup.iss, Makefile, version.h: *** empty log message ***
                    298: 
                    299:        * imach.c: Summary: temporary
                    300: 
1.42    ! brouard   301: 2016-02-17  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   302: 
                    303:        * imach.c: Summary: Probably last 0.98 stable version 0.98r6
                    304: 
1.42    ! brouard   305: 2016-02-16  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   306: 
                    307:        * imach.c: Summary: minor bug
                    308: 
                    309:        * imach.c: Summary: 0.99r2
                    310: 
1.42    ! brouard   311: 2016-02-15  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   312: 
                    313:        * imach.c: *** empty log message ***
                    314: 
1.42    ! brouard   315: 2016-02-12  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   316: 
                    317:        * imach.c: Summary: 0.99 Back projections
                    318: 
1.42    ! brouard   319: 2015-12-23  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   320: 
                    321:        * imach.c: Summary: Experimental backcast
                    322: 
1.42    ! brouard   323: 2015-12-18  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   324: 
                    325:        * imach.c: Summary: 0.98r4 Warning and status=-2
                    326: 
                    327:        Version 0.98r4 is now:
                    328:         - displaying an error when status is -1, date of interview unknown and date of death known;
                    329:         - permitting a status -2 when the vital status is unknown at a known date of right truncation.
                    330:        Older changes concerning s=-2, dating from 2005 have been supersed.
                    331: 
                    332:        * Makefile: *** empty log message ***
                    333: 
1.42    ! brouard   334: 2015-12-16  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   335: 
                    336:        * Makefile: *** empty log message ***
                    337: 
                    338:        * imach.c: Summary: 0.98r4 working
                    339: 
                    340:        * Makefile: Summary: linuxrpm added
                    341: 
                    342:        * Makefile: *** empty log message ***
                    343: 
                    344:        * imach.c: Summary: temporary not working
                    345: 
1.42    ! brouard   346: 2015-12-11  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   347: 
                    348:        * imach.c: Summary: 0.98r4
                    349: 
1.42    ! brouard   350: 2015-12-08  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   351: 
                    352:        * Makefile: *** empty log message ***
                    353: 
1.42    ! brouard   354: 2015-11-21  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   355: 
                    356:        * Makefile:
                    357:        Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
                    358: 
                    359:        * imach.c: Summary: minor typo
                    360: 
                    361:        * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
                    362: 
                    363:        Author: Nicolas Brouard
                    364: 
1.42    ! brouard   365: 2015-11-18  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   366: 
                    367:        * imach.c: Summary: Start working on projected prevalences
                    368: 
1.42    ! brouard   369: 2015-11-17  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   370: 
                    371:        * imach.c: Summary: Adding ftolpl parameter
                    372:        Author: N Brouard
                    373: 
                    374:        We had difficulties to get smoothed confidence intervals. It was due
                    375:        to the period prevalence which wasn't computed accurately. The inner
                    376:        parameter ftolpl is now an outer parameter of the .imach parameter
                    377:        file after estepm. If ftolpl is small 1.e-4 and estepm too,
                    378:        computation are long.
                    379: 
                    380:        * version.h: *** empty log message ***
                    381: 
                    382:        * imach.c: Summary: temporary
                    383: 
1.42    ! brouard   384: 2015-10-27  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   385: 
                    386:        * Makefile: *** empty log message ***
                    387: 
                    388:        * setup.iss.in: Summary: some new subdirs
                    389: 
                    390:        * imach.c: *** empty log message ***
                    391: 
                    392:        * setup.iss.in:
                    393:        Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
                    394: 
1.42    ! brouard   395: 2015-10-24  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   396: 
                    397:        * imach.c: *** empty log message ***
                    398: 
1.42    ! brouard   399: 2015-10-23  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   400: 
                    401:        * imach.c:
                    402:        Summary: 0.98r3 some clarification for graphs on likelihood contributions
                    403: 
1.42    ! brouard   404: 2015-10-01  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   405: 
                    406:        * imach.c: Summary: Some new graphs of contribution to likelihood
                    407: 
1.42    ! brouard   408: 2015-09-30  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   409: 
                    410:        * Makefile:
                    411:        Summary: Version read from version.h, itself read with cmake
                    412: 
                    413:        * imach.c: Summary: looking at better estimation of the hessian
                    414: 
                    415:        Also a better criteria for convergence to the period prevalence And
                    416:        therefore adding the number of years needed to converge. (The
                    417:        prevalence in any alive state shold sum to one
                    418: 
                    419:        * Makefile: *** empty log message ***
                    420: 
1.42    ! brouard   421: 2015-09-22  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   422: 
                    423:        * imach.c:
                    424:        Summary: Adding some overall graph on contribution to likelihood. Might change
                    425: 
1.42    ! brouard   426: 2015-09-15  Brouard Nicolas  <brouard@ined.fr>
1.38      brouard   427: 
                    428:        * Makefile: *** empty log message ***
                    429: 
                    430:        * imach.c: Summary: 0.98r0
                    431: 
                    432:        - Some new graphs like suvival functions
                    433:        - Some bugs fixed like model=1+age+V2.
                    434: 
                    435:        * ChangeLog, Makefile: Summary: 0.98r0
                    436: 
                    437:        * CMakeLists.txt: Summary: Some tests for setup.iss
                    438: 
1.37      brouard   439: 2015-09-15  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
                    440: 
                    441:        *  (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
                    442: 
1.36      brouard   443: 2015-08-18  Nicolas J Brouard   <nbrouard@tugault.local>
                    444: 
                    445:        *  (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
                    446: 
1.35      brouard   447: 2015-08-03  Nicolas J Brouard   <nbrouard@tugault.ined.fr>
                    448: 
                    449:        *  (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
                    450: 
                    451: 2014-12-16  Nicolas J Brouard   <nbrouard@tugault.local>
                    452: 
                    453:        * imach.c (Module): Merging 1.61 to 1.162
                    454: 
                    455: 2014-09-02  Nicolas J Brouard   <nbrouard@njbrouard.ined.fr>
                    456: 
                    457:        * prevlim.h (Module): 
                    458: 
1.34      brouard   459: 2014-01-26  Nicolas J Brouard   <nbrouard@ledermann-2.local>
                    460: 
                    461:        * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
                    462:        (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
                    463: 
1.33      brouard   464: 2010-04-29  brouard  <brouard@ined.fr>
                    465: 
                    466:        * imach.c (Module): Checking covariates for more complex models
                    467:        than V1+V2. A lot of change to be done. Unstable.
                    468: 
                    469: 2010-04-26  brouard  <brouard@ined.fr>
                    470: 
                    471:        * imach.c (Module): merging some libgsl code. Fixing computation
                    472:        of likelione (using inter/intrapolation if mle = 0) in order to
                    473:        get same likelihood as if mle=1.
                    474:        Some cleaning of code and comments added.
                    475: 
1.32      brouard   476: 2009-10-29  brouard  <brouard@ined.fr>
                    477: 
                    478:        * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
                    479: 
1.31      brouard   480: 2006-06-30  Brouard Nicolas  <brouard@localhost>
                    481: 
                    482:        * imach.c (Module): Clarifications on computing e.j
                    483: 
1.30      brouard   484: 2006-04-28  Brouard Nicolas  <brouard@localhost>
                    485: 
                    486:        * imach.c (Module): Yes the sum of survivors was wrong since
                    487:        imach-114 because nhstepm was no more computed in the age
                    488:        loop. Now we define nhstepma in the age loop.
1.31      brouard   489:        (Module): In order to speed up (in case of numerous covariates) we
                    490:        compute health expectancies (without variances) in a first step
                    491:        and then all the health expectancies with variances or standard
                    492:        deviation (needs data from the Hessian matrices) which slows the
                    493:        computation.
                    494:        In the future we should be able to stop the program is only health
                    495:        expectancies and graph are needed without standard deviations.
1.30      brouard   496: 
1.29      lievre    497: 2006-04-04  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                    498: 
                    499:        * imach.iss (Module): 
                    500: 
                    501:        * imach.c (Module): bugs in evsi + population file added in htm output file
                    502: 
                    503: 2006-03-22  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                    504: 
                    505:        * imach.c (Module): 
                    506: 
1.27      brouard   507: 2006-03-20  Brouard Nicolas  <brouard@localhost>
                    508: 
1.28      brouard   509:        * imach.c (Module): <title> changed, corresponds to .htm file
                    510:        name. <head> headers where missing.
                    511: 
1.27      brouard   512:        * Makefile (Module): 0.98g
                    513: 
                    514:        * imach.c (Module): Weights can have a decimal point as for
                    515:        English (a comma might work with a correct LC_NUMERIC environment,
                    516:        otherwise the weight is truncated).
                    517:        Modification of warning when the covariates values are not 0 or
                    518:        1. 
                    519:        Version 0.98g
                    520: 
1.24      lievre    521: 2006-03-16  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                    522: 
1.26      lievre    523:        * imach.c (Module): Comments concerning covariates added
                    524: 
1.25      lievre    525:        * noreg-setup.iss (Module): Version 0.98f
                    526: 
1.24      lievre    527:        * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
                    528: 
                    529:        * imach.c (Module): refinements in the computation of lli if
                    530:        status=-2 in order to have more reliable computation if stepm is
                    531:        not 1 month. Version 0.98f
                    532: 
1.22      brouard   533: 2006-03-15  Brouard Nicolas  <brouard@localhost>
                    534: 
                    535:        * imach.c (Module): Bug if status = -2, the loglikelihood was
                    536:        computed as likelihood omitting the logarithm. Version O.98e
                    537: 
1.21      brouard   538: 2006-03-14  Brouard Nicolas  <brouard@localhost>
                    539: 
                    540:        * imach.c (Module): varevsij Comments added explaining the second
                    541:        table of variances if popbased=1 .
                    542:        (Module): Covariances of eij, ekl added, graphs fixed, new html link.
                    543:        (Module): Function pstamp added
                    544:        (Module): Version 0.98d 
                    545: 
1.20      brouard   546: 2006-03-06  Brouard Nicolas  <brouard@localhost>
                    547: 
                    548:        * imach.c (Module): Variance-covariance wrong links and
                    549:        varian-covariance of ej. is needed (Saito).
                    550: 
1.19      brouard   551: 2006-02-27  Brouard Nicolas  <brouard@localhost>
                    552: 
                    553:        * imach.c (Module): One freematrix added in mlikeli!
                    554: 
                    555: 2006-02-26  Brouard Nicolas  <brouard@localhost>
                    556: 
                    557:        * imach.c (Module): Some improvements in processing parameter
                    558:        filename with strsep.
                    559: 
                    560: 2006-02-24  Brouard Nicolas  <brouard@localhost>
                    561: 
                    562:        * imach.c (Module): Memory leaks checks with valgrind and:
                    563:        datafile was not closed, some imatrix were not freed and on matrix
                    564:        allocation too.
                    565: 
1.16      lievre    566: 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                    567: 
1.18      lievre    568:        * strsep.c (Module): Inclusion because not in mingw32!!!
                    569: 
1.17      lievre    570:        * setup.iss.in (Module): IMACHSETUPVERSION added
                    571: 
                    572:        * noreg-setup.iss (Module): added to cvs tree
                    573: 
1.16      lievre    574:        * Makefile (Module): IMACHSETUPVERSION added
                    575: 
1.15      brouard   576: 2006-01-30  BROUARD Nicolas  <brouard@localhost>
                    577: 
1.23      brouard   578:        * Makefile (Module, Module): Latest Makefile
                    579: 
1.15      brouard   580:        * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
                    581: 
                    582: 2006-01-27  BROUARD Nicolas  <brouard@localhost>
                    583: 
                    584:        * noreg-setup.iss (Module): ADDED
                    585: 
                    586: 2006-01-24  BROUARD Nicolas  <brouard@localhost>
                    587: 
                    588:        * imach.c (Module): Comments (lines starting with a #) are allowed in data.
                    589: 
1.14      brouard   590: 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
                    591: 
                    592:        * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
                    593: 
                    594:        * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
                    595: 
1.12      lievre    596: 2005-09-30    <lievre@PC_00595>
                    597: 
                    598:        * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13      lievre    599:        (Module): If the status is missing at the last wave but we know
                    600:        that the person is alive, then we can code his/her status as -2
                    601:        (instead of missing=-1 in earlier versions) and his/her
                    602:        contributions to the likelihood is 1 - Prob of dying from last
                    603:        health status (= 1-p13= p11+p12 in the easiest case of somebody in
                    604:        the healthy state at last known wave). Version is 0.98 
1.12      lievre    605: 
1.11      brouard   606: 2004-05-20  Brouard Nicolas  <brouard@localhost>
                    607: 
                    608:        * imach.c (Repository): 
                    609:        Agnes added a direct estimation of mortality (without the need of
                    610:        computing period prevalence and differential mortality). Thus here
                    611:        is version 0.97a which has been distributed to some people at
                    612:        REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
                    613:        mortality using covariates is not done today. Estimating direct
                    614:        mortality is a very different process because it doesn't need
                    615:        interpolation because it is easy to get the lx from the force of
                    616:        the mortality mux in the simplest case as for a Gompertz (log mux
                    617:        = a + b*x . But we have been able to incorporate the new code
                    618:        within former imach program (0.96d) without deteriorating too much
                    619:        the understanding of the program. 
                    620: 
1.10      brouard   621: 2003-06-25    <brouard@BROUARD>
                    622: 
                    623:        * imach.c (Module): On windows (cygwin) function asctime_r doesn't
                    624:        exist so I changed back to asctime which exists.
                    625:        (Module): Version 0.96b
                    626: 
                    627: 2003-06-24    <brouard@BROUARD>
                    628: 
                    629:        * imach.c (Module): Some bugs corrected for windows. Also, when
                    630:        mle=-1 a template is output in file "or"mypar.txt with the design
                    631:        of the covariance matrix to be input.
                    632: 
1.9       brouard   633: 2003-06-25  Brouard Nicolas  <brouard@homebrou>
                    634: 
                    635:        * imach.c (Repository): Duplicated warning errors corrected.
                    636:        (Repository): Elapsed time after each iteration is now output. It
                    637:        helps to forecast when convergence will be reached. Elapsed time
                    638:        is stamped in powell.  We created a new html file for the graphs
                    639:        concerning matrix of covariance. It has extension -cov.htm.
                    640: 
1.8       brouard   641: 2003-06-23  Brouard Nicolas  <brouard@homebrou>
                    642: 
                    643:        * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
                    644: 
                    645: 2003-06-18  Brouard Nicolas  <brouard@homebrou>
                    646: 
                    647:        * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
                    648: 
1.7       brouard   649: 2003-06-17  Brouard Nicolas  <brouard@homebrou>
                    650: 
                    651: 
                    652:        * imach.c (Repository): Check when date of death was earlier that
                    653:        current date of interview. It may happen when the death was just
                    654:        prior to the death. In this case, dh was negative and likelihood
                    655:        was wrong (infinity). We still send an "Error" but patch by
                    656:        assuming that the date of death was just one stepm after the
                    657:        interview.
                    658:        (Repository): Because some people have very long ID (first column)
                    659:        we changed int to long in num[] and we added a new lvector for
                    660:        memory allocation. But we also truncated to 8 characters (left
                    661:        truncation)
                    662: 
                    663:        (Repository): No more line truncation errors.
                    664: 
                    665: 2003-06-14  Brouard Nicolas  <brouard@homebrou>
                    666: 
                    667:        * imach.c (Repository): Add of a routine likelione (likelihood
                    668:        only once) which prints on a text file
                    669:        (ilk) the contributions to the likelihood for each
                    670:        individual/wave.
                    671: 
                    672: 2003-06-13  Brouard Nicolas  <brouard@homebrou>
                    673:        * imach.c (Repository): Replace "freqsummary" at a correct
                    674:        place. It differs from routine "prevalence" which may be called
                    675:        many times. Probs is memory consuming and must be used with
                    676:        parcimony.
                    677: 
                    678: 2003-06-17    <brouard@BROUARD>
                    679: 
                    680:        * timeval.h (Module): Added included file to make use of
                    681:        gettimeofday working on win32 with cygwin.
                    682: 
                    683: 2003-05-16  Brouard Nicolas  <brouard@brouard>
                    684:        * imach.c (Module): Insert of a warning if the delay between two
                    685:        waves is negative.
                    686: 
                    687:        * imach.c (Module): 
                    688: 
                    689: 2003-05-03    <brouard@BROUARD>
                    690: 
                    691:        * imach.c: Some cleaning
                    692: 
                    693: 2003-03-28    <brouard@BROUARD>
                    694:        * imach.c (Module): In version up to 0.92 likelihood was computed
                    695:        as if date of death was unknown. Death was treated as any other
                    696:        health state: the date of the interview describes the actual state
                    697:        and not the date of a change in health state. The former idea was
                    698:        to consider that at each interview the state was recorded
                    699:        (healthy, disable or death) and IMaCh was corrected; but when we
                    700:        introduced the exact date of death then we should have modified
                    701:        the contribution of an exact death to the likelihood. This new
                    702:        contribution is smaller and very dependent of the step unit
                    703:        stepm. It is no more the probability to die between last interview
                    704:        and month of death but the probability to survive from last
                    705:        interview up to one month before death multiplied by the
                    706:        probability to die within a month. Thanks to Chris
                    707:        Jackson for correcting this bug.  Former versions increased
                    708:        mortality artificially. The bad side is that we add another loop
                    709: 
                    710: 
                    711:        which slows down the processing. The difference can be up to 10%
                    712: 
                    713: 
                    714:        lower mortality.
                    715: 
                    716: 
                    717: 
                    718: 
                    719: 
                    720: 2002-05-30    <brouard@BROUARD>
                    721: 
                    722: 
                    723: 
                    724: 
                    725: 
                    726:        * 
                    727: 
                    728: 
                    729: 
                    730: 
                    731: 
                    732:        * imach.c (Module): Add correlation matrix of one-step
                    733: 
                    734: 
                    735:        probabilities and covariance matrix
                    736: 
                    737: 
                    738: 
                    739: 
                    740: 

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