2006-03-20 Brouard Nicolas * imach.c (Module): changed, corresponds to .htm file name. <head> headers where missing. * Makefile (Module): 0.98g * imach.c (Module): Weights can have a decimal point as for English (a comma might work with a correct LC_NUMERIC environment, otherwise the weight is truncated). Modification of warning when the covariates values are not 0 or 1. Version 0.98g 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> * imach.c (Module): Comments concerning covariates added * noreg-setup.iss (Module): Version 0.98f * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup * imach.c (Module): refinements in the computation of lli if status=-2 in order to have more reliable computation if stepm is not 1 month. Version 0.98f 2006-03-15 Brouard Nicolas <brouard@localhost> * imach.c (Module): Bug if status = -2, the loglikelihood was computed as likelihood omitting the logarithm. Version O.98e 2006-03-14 Brouard Nicolas <brouard@localhost> * imach.c (Module): varevsij Comments added explaining the second table of variances if popbased=1 . (Module): Covariances of eij, ekl added, graphs fixed, new html link. (Module): Function pstamp added (Module): Version 0.98d 2006-03-06 Brouard Nicolas <brouard@localhost> * imach.c (Module): Variance-covariance wrong links and varian-covariance of ej. is needed (Saito). 2006-02-27 Brouard Nicolas <brouard@localhost> * imach.c (Module): One freematrix added in mlikeli! 2006-02-26 Brouard Nicolas <brouard@localhost> * imach.c (Module): Some improvements in processing parameter filename with strsep. 2006-02-24 Brouard Nicolas <brouard@localhost> * imach.c (Module): Memory leaks checks with valgrind and: datafile was not closed, some imatrix were not freed and on matrix allocation too. 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> * strsep.c (Module): Inclusion because not in mingw32!!! * setup.iss.in (Module): IMACHSETUPVERSION added * noreg-setup.iss (Module): added to cvs tree * Makefile (Module): IMACHSETUPVERSION added 2006-01-30 BROUARD Nicolas <brouard@localhost> * Makefile (Module, Module): Latest Makefile * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe 2006-01-27 BROUARD Nicolas <brouard@localhost> * noreg-setup.iss (Module): ADDED 2006-01-24 BROUARD Nicolas <brouard@localhost> * imach.c (Module): Comments (lines starting with a #) are allowed in data. 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> * Makefile (Module): Added Imach98.pmsp and howto crete a dmg * createdmg.sh (Module): Creates a dmg disk for MaC OS/X 2005-09-30 <lievre@PC_00595> * imach.c (Module): sump fixed, loop imx fixed, and simplifications. (Module): If the status is missing at the last wave but we know that the person is alive, then we can code his/her status as -2 (instead of missing=-1 in earlier versions) and his/her contributions to the likelihood is 1 - Prob of dying from last health status (= 1-p13= p11+p12 in the easiest case of somebody in the healthy state at last known wave). Version is 0.98 2004-05-20 Brouard Nicolas <brouard@localhost> * imach.c (Repository): Agnes added a direct estimation of mortality (without the need of computing period prevalence and differential mortality). Thus here is version 0.97a which has been distributed to some people at REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of mortality using covariates is not done today. Estimating direct mortality is a very different process because it doesn't need interpolation because it is easy to get the lx from the force of the mortality mux in the simplest case as for a Gompertz (log mux = a + b*x . But we have been able to incorporate the new code within former imach program (0.96d) without deteriorating too much the understanding of the program. 2003-06-25 <brouard@BROUARD> * imach.c (Module): On windows (cygwin) function asctime_r doesn't exist so I changed back to asctime which exists. (Module): Version 0.96b 2003-06-24 <brouard@BROUARD> * imach.c (Module): Some bugs corrected for windows. Also, when mle=-1 a template is output in file "or"mypar.txt with the design of the covariance matrix to be input. 2003-06-25 Brouard Nicolas <brouard@homebrou> * imach.c (Repository): Duplicated warning errors corrected. (Repository): Elapsed time after each iteration is now output. It helps to forecast when convergence will be reached. Elapsed time is stamped in powell. We created a new html file for the graphs concerning matrix of covariance. It has extension -cov.htm. 2003-06-23 Brouard Nicolas <brouard@homebrou> * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. 2003-06-18 Brouard Nicolas <brouard@homebrou> * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 2003-06-17 Brouard Nicolas <brouard@homebrou> * imach.c (Repository): Check when date of death was earlier that current date of interview. It may happen when the death was just prior to the death. In this case, dh was negative and likelihood was wrong (infinity). We still send an "Error" but patch by assuming that the date of death was just one stepm after the interview. (Repository): Because some people have very long ID (first column) we changed int to long in num[] and we added a new lvector for memory allocation. But we also truncated to 8 characters (left truncation) (Repository): No more line truncation errors. 2003-06-14 Brouard Nicolas <brouard@homebrou> * imach.c (Repository): Add of a routine likelione (likelihood only once) which prints on a text file (ilk) the contributions to the likelihood for each individual/wave. 2003-06-13 Brouard Nicolas <brouard@homebrou> * imach.c (Repository): Replace "freqsummary" at a correct place. It differs from routine "prevalence" which may be called many times. Probs is memory consuming and must be used with parcimony. 2003-06-17 <brouard@BROUARD> * timeval.h (Module): Added included file to make use of gettimeofday working on win32 with cygwin. 2003-05-16 Brouard Nicolas <brouard@brouard> * imach.c (Module): Insert of a warning if the delay between two waves is negative. * imach.c (Module): 2003-05-03 <brouard@BROUARD> * imach.c: Some cleaning 2003-03-28 <brouard@BROUARD> * imach.c (Module): In version up to 0.92 likelihood was computed as if date of death was unknown. Death was treated as any other health state: the date of the interview describes the actual state and not the date of a change in health state. The former idea was to consider that at each interview the state was recorded (healthy, disable or death) and IMaCh was corrected; but when we introduced the exact date of death then we should have modified the contribution of an exact death to the likelihood. This new contribution is smaller and very dependent of the step unit stepm. It is no more the probability to die between last interview and month of death but the probability to survive from last interview up to one month before death multiplied by the probability to die within a month. Thanks to Chris Jackson for correcting this bug. Former versions increased mortality artificially. The bad side is that we add another loop which slows down the processing. The difference can be up to 10% lower mortality. 2002-05-30 <brouard@BROUARD> * * imach.c (Module): Add correlation matrix of one-step probabilities and covariance matrix