|
version 1.2, 2005/10/25 11:53:26
|
version 1.5, 2015/08/18 16:43:19
|
|
Line 1
|
Line 1
|
| <body> |
<html><head> |
| <title>IMaCh rbiaspar.txt</title> |
<title>IMaCh biaspar.htm</title></head> |
| <font size="2">Imach version 0.98, September 2005, INED-EUROREVES <br> $Revision$ $Date$</font> <hr size="2" color="#EC5E5E"> |
<body><font size="2">Imach version 0.98q5, August 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015 <br> $Revision$ $Date$</font> <hr size="2" color="#EC5E5E"> |
| Title=1st_example <br>Datafile=data1.txt Firstpass=1 Lastpass=4 Stepm=1 Weight=0 Model=.<br> |
Title=1st_example <br>Datafile=data1.txt Firstpass=1 Lastpass=4 Stepm=1 Weight=0 Model=<br> |
| |
|
| <hr size="2" color="#EC5E5E"> <ul><li><h4>Parameter files</h4> |
<hr size="2" color="#EC5E5E"> <ul><li><h4>Parameter files</h4> |
| |
- Parameter file: <a href="biaspar.imach">biaspar.imach</a><br> |
| - Copy of the parameter file: <a href="orbiaspar.txt">orbiaspar.txt</a><br> |
- Copy of the parameter file: <a href="orbiaspar.txt">orbiaspar.txt</a><br> |
| - Log file of the run: <a href="biaspar.log">biaspar.log</a><br> |
- Log file of the run: <a href="biaspar.log">biaspar.log</a><br> |
| - Gnuplot file name: <a href="biaspar.gp">biaspar.gp</a><br> |
- Gnuplot file name: <a href="biaspar.gp">biaspar.gp</a><br> |
| - Date and time at start: Mon Oct 24 14:51:36 2005 |
- Date and time at start: Tue Aug 18 18:20:44 2015 |
| </ul> |
</ul> |
| |
|
| <br>Total number of observations=8270 <br> |
<br>Total number of observations=8270 <br> |
|
Line 15 Youngest age at first (selected) pass 70
|
Line 16 Youngest age at first (selected) pass 70
|
| Interval (in months) between two waves: Min=1 Max=74 Mean=24.04<br> |
Interval (in months) between two waves: Min=1 Max=74 Mean=24.04<br> |
| |
|
| <br>File of contributions to the likelihood: <a href="biaspar/ilkrbiaspar.txt">biaspar/ilkrbiaspar.txt</a><br> |
<br>File of contributions to the likelihood: <a href="biaspar/ilkrbiaspar.txt">biaspar/ilkrbiaspar.txt</a><br> |
| <ul><li><h4>Result files (first order: no variance)</h4> |
<ul><li><a href='#firstorder'>Result files (first order: no variance)</a> |
| |
<li><a href='#secondorder'>Result files (second order (variance)</a> |
| |
</ul><ul><li><h4><a name='firstorder'>Result files (first order: no variance)</a></h4> |
| - Observed prevalence in each state (during the period defined between 1/1/1984 and 1/6/1988): <a href="biaspar/prbiaspar.txt">biaspar/prbiaspar.txt</a> <br> |
- Observed prevalence in each state (during the period defined between 1/1/1984 and 1/6/1988): <a href="biaspar/prbiaspar.txt">biaspar/prbiaspar.txt</a> <br> |
| - Estimated transition probabilities over 1 (stepm) months: <a href="biaspar/pijrbiaspar.txt">biaspar/pijrbiaspar.txt</a><br> |
- Estimated transition probabilities over 1 (stepm) months: <a href="biaspar/pijrbiaspar.txt">biaspar/pijrbiaspar.txt</a><br> |
| - Stable prevalence in each health state: <a href="biaspar/plrbiaspar.txt">biaspar/plrbiaspar.txt</a> <br> |
- Period (stable) prevalence in each health state: <a href="biaspar/plrbiaspar.txt">biaspar/plrbiaspar.txt</a> <br> |
| - Life expectancies by age and initial health status (estepm= 1 months): <a href="biaspar/erbiaspar.txt">biaspar/erbiaspar.txt</a> <br> |
- (a) Life expectancies by health status at initial age, ei. (b) health expectancies by health status at initial age, eij . If one or more covariates are included, specific tables for each value of the covariate are output in sequences within the same file (estepm= 1 months): <a href="biaspar/erbiaspar.txt">biaspar/erbiaspar.txt</a> <br> |
| |
- Population projections by age and states: <a href="biaspar/frbiaspar.txt">biaspar/frbiaspar.txt</a> <br> |
| </li> |
</li> |
| <ul><li><b>Graphs</b></li><p><br>- Pij or Conditional probabilities to be observed in state j being in state i, 1 (stepm) months before: biaspar/pebiaspar11.png<br> <img src="biaspar/pebiaspar11.png"><br>- Pij or Conditional probabilities to be observed in state j being in state i 1 (stepm) months before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: biaspar/pebiaspar12.png<br> <img src="biaspar/pebiaspar12.png"><br>- Stable prevalence in each health state : pbiaspar/pbiaspar11.png<br> <img src="biaspar/pbiaspar11.png"> |
<ul><li><b>Graphs</b></li><p><br>- Pij or Conditional probabilities to be observed in state j being in state i, 1 (stepm) months before: <a href="biaspar/pebiaspar1_1.png">biaspar/pebiaspar1_1.png</a><br> <img src="biaspar/pebiaspar1_1.png"><br>- Pij or Conditional probabilities to be observed in state j being in state i 1 (stepm) months before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: <a href="biaspar/pebiaspar1_2.png">biaspar/pebiaspar1_2.png</a><br> <img src="biaspar/pebiaspar1_2.png"><br>- Convergence to period (stable) prevalence in state 1. Or probability to be in state 1 being in state (1 to 2) at different ages. <a href="biaspar/pbiaspar1_1.png">biaspar/pbiaspar1_1.png</a><br> <img src="biaspar/pbiaspar1_1.png"><br>- Convergence to period (stable) prevalence in state 2. Or probability to be in state 2 being in state (1 to 2) at different ages. <a href="biaspar/pbiaspar2_1.png">biaspar/pbiaspar2_1.png</a><br> <img src="biaspar/pbiaspar2_1.png"> |
| <br>- Health life expectancies by age and initial health state (1): biaspar/expbiaspar11.png <br> <img src="biaspar/expbiaspar11.png"> |
<br>- Life expectancy by health state (1) at initial age and its decomposition into health expectancies in each alive state (1 to 2) : <a href="biaspar/expbiaspar11.png">biaspar/expbiaspar11.png</a> <br> <img src="biaspar/expbiaspar11.png"> |
| <br>- Health life expectancies by age and initial health state (2): biaspar/expbiaspar21.png <br> <img src="biaspar/expbiaspar21.png"></ul> |
<br>- Life expectancy by health state (2) at initial age and its decomposition into health expectancies in each alive state (1 to 2) : <a href="biaspar/expbiaspar21.png">biaspar/expbiaspar21.png</a> <br> <img src="biaspar/expbiaspar21.png"></ul> |
| <br><li><h4> Result files (second order: variances)</h4> |
<br><li><h4> <a name='secondorder'>Result files (second order: variances)</a></h4> |
| - Parameter file with estimated parameters and covariance matrix: <a href="rbiaspar.imach">rbiaspar.imach</a> <br> |
- Parameter file with estimated parameters and covariance matrix: <a href="rbiaspar.imach">rbiaspar.imach</a> <br> - 95% confidence intervals and T statistics are in the log file.<br> |
| - Variance of one-step probabilities: <a href="biaspar/probrbiaspar.txt">biaspar/probrbiaspar.txt</a> <br> |
- Standard deviation of one-step probabilities: <a href="biaspar/probrbiaspar.txt">biaspar/probrbiaspar.txt</a> <br> |
| - Variance-covariance of one-step probabilities: <a href="biaspar/probcovrbiaspar.txt">biaspar/probcovrbiaspar.txt</a> <br> |
- Variance-covariance of one-step probabilities: <a href="biaspar/probcovrbiaspar.txt">biaspar/probcovrbiaspar.txt</a> <br> |
| - Correlation matrix of one-step probabilities: <a href="biaspar/probcorrbiaspar.txt">biaspar/probcorrbiaspar.txt</a> <br> |
- Correlation matrix of one-step probabilities: <a href="biaspar/probcorrbiaspar.txt">biaspar/probcorrbiaspar.txt</a> <br> |
| - Variances and covariances of life expectancies by age and initial health status (estepm=1 months): <a href="biaspar/vrbiaspar.txt">biaspar/vrbiaspar.txt</a><br> |
- Variances and covariances of health expectancies by age and <b>initial health status</b> (cov(e<sup>ij</sup>,e<sup>kl</sup>)(estepm= 1 months): <a href="biaspar/cverbiaspar.txt">biaspar/cverbiaspar.txt</a> <br> |
| - Health expectancies with their variances (no covariance): <a href="biaspar/trbiaspar.txt">biaspar/trbiaspar.txt</a> <br> |
</li> - (a) Health expectancies by health status at initial age (e<sup>ij</sup>) and standard errors (in parentheses) (b) life expectancies and standard errors (e<sup>i.</sup>=e<sup>i1</sup>+e<sup>i2</sup>+...)(estepm= 1 months): <a href="biaspar/stderbiaspar.txt">biaspar/stderbiaspar.txt</a> <br> |
| - Standard deviation of stable prevalences: <a href="biaspar/vplrbiaspar.txt">biaspar/vplrbiaspar.txt</a> <br> |
</li> - Variances and covariances of health expectancies by age. Status (i) based health expectancies (in state j), e<sup>ij</sup> are weighted by the period prevalences in each state i (if popbased=1, an additional computation is done using the cross-sectional prevalences, i.e population based) (estepm=1 months): <a href="biaspar/vrbiaspar.txt">biaspar/vrbiaspar.txt</a><br> |
| <ul><li><b>Graphs</b></li><p><br>- Observed (cross-sectional) and period (incidence based) prevalence (with 95% confidence interval) in state (1): biaspar/vbiaspar11.png <br><img src="biaspar/vbiaspar11.png"><br>- Observed (cross-sectional) and period (incidence based) prevalence (with 95% confidence interval) in state (2): biaspar/vbiaspar21.png <br><img src="biaspar/vbiaspar21.png"> |
- Total life expectancy and total health expectancies to be spent in each health state e<sup>.j</sup> with their standard errors (if popbased=1, an additional computation is done using the cross-sectional prevalences, i.e population based) (estepm=1 months): <a href="biaspar/trbiaspar.txt">biaspar/trbiaspar.txt</a> <br> |
| <br>- Total life expectancy by age and health expectancies in states (1) and (2): biaspar/ebiaspar1.png<br><img src="biaspar/ebiaspar1.png"></ul> |
- Standard deviation of period (stable) prevalences: <a href="biaspar/vplrbiaspar.txt">biaspar/vplrbiaspar.txt</a> <br> |
| |
<ul><li><b>Graphs</b></li><p><br>- Observed (cross-sectional) and period (incidence based) prevalence (with 95% confidence interval) in state (1): biaspar/vbiaspar1_1.png <br><img src="biaspar/vbiaspar1_1.png"><br>- Observed (cross-sectional) and period (incidence based) prevalence (with 95% confidence interval) in state (2): biaspar/vbiaspar2_1.png <br><img src="biaspar/vbiaspar2_1.png"> |
| |
<br>- Total life expectancy by age and health expectancies in states (1) and (2). If popbased=1 the smooth (due to the model) true period expectancies (those weighted with period prevalences are also drawn in addition to the population based expectancies computed using observed and cahotic prevalences: biaspar/ebiaspar1.png<br><img src="biaspar/ebiaspar1.png"></ul> |
| <li><h4> Computing and drawing one step probabilities with their confidence intervals</h4></li> |
<li><h4> Computing and drawing one step probabilities with their confidence intervals</h4></li> |
| |
|
| |
|
|
Line 46 Interval (in months) between two waves:
|
Line 52 Interval (in months) between two waves:
|
| <br> File (multiple files are possible if covariates are present): <A href="biaspar/prmorprev1-stablbased-rbiaspar.txt">biaspar/prmorprev1-stablbased-rbiaspar.txt</a> |
<br> File (multiple files are possible if covariates are present): <A href="biaspar/prmorprev1-stablbased-rbiaspar.txt">biaspar/prmorprev1-stablbased-rbiaspar.txt</a> |
| |
|
| <br> Probability is computed over estepm=1 months. <br> <img src="biaspar/varmuptjgr-stablbased-biaspar1.png"> <br> |
<br> Probability is computed over estepm=1 months. <br> <img src="biaspar/varmuptjgr-stablbased-biaspar1.png"> <br> |
| <br>Local time at start Mon Oct 24 14:51:36 2005 |
|
| <br>Local time at end Mon Oct 24 16:19:18 2005 |
|
| <br> |
|
| |
|
| |
<br>Local time at start Tue Aug 18 18:20:44 2015 |
| |
<br>Local time at end Tue Aug 18 18:26:33 2015 |
| |
<br> |
| |
</body></html> |
| |
|
![[BACK]](/icons/small/back.gif){kind=icon}
Return to biaspar.htm CVS log ![[TXT]](/icons/small/text.gif){kind=icon}
![[DIR]](/icons/small/dir.gif){kind=icon}
Up to [Local Repository] / imach / html / doc