--- imach/html/doc/biaspar.htm	2006/02/09 15:20:33	1.3
+++ imach/html/doc/biaspar.htm	2015/08/04 07:14:25	1.4
@@ -1,13 +1,14 @@
-<body>
-<title>IMaCh rbiaspar.txt</title>
- <font size="2">Imach version 0.98b, January 2006, INED-EUROREVES  <br> $Revision: 1.3 $ $Date: 2006/02/09 15:20:33 $</font> <hr size="2" color="#EC5E5E"> 
-Title=1st_example <br>Datafile=data1.txt Firstpass=1 Lastpass=4 Stepm=1 Weight=0 Model=.<br>
+<html><head>
+<title>IMaCh biaspar.htm</title></head>
+ <body><font size="2">Imach version 0.98q2, April 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015 <br> $Revision: 1.4 $ $Date: 2015/08/04 07:14:25 $</font> <hr size="2" color="#EC5E5E"> 
+Title=1st_example <br>Datafile=data1.txt Firstpass=1 Lastpass=4 Stepm=1 Weight=0 Model=<br>
 
 <hr  size="2" color="#EC5E5E"> <ul><li><h4>Parameter files</h4>
+ - Parameter file: <a href="biaspar.imach">biaspar.imach</a><br>
  - Copy of the parameter file: <a href="orbiaspar.txt">orbiaspar.txt</a><br>
  - Log file of the run: <a href="biaspar.log">biaspar.log</a><br>
  - Gnuplot file name: <a href="biaspar.gp">biaspar.gp</a><br>
- - Date and time at start: Thu Feb 09 13:51:49 2006
+ - Date and time at start: Tue May 05 11:13:23 2015
 </ul>
 
 <br>Total number of observations=8270 <br>
@@ -15,39 +16,3 @@ Youngest age at first (selected) pass 70
 Interval (in months) between two waves: Min=1 Max=74 Mean=24.04<br>
 
 <br>File of contributions to the likelihood: <a href="biaspar/ilkrbiaspar.txt">biaspar/ilkrbiaspar.txt</a><br>
-<ul><li><a href='#firstorder'>Result files (first order: no variance)</a>
-    <li><a href='#secondorder'>Result files (second order (variance)</a>
- </ul><ul><li><h4><a name='firstorder'>Result files (first order: no variance)</a></h4>
-  - Observed prevalence in each state (during the period defined between 1/1/1984 and 1/6/1988): <a href="biaspar/prbiaspar.txt">biaspar/prbiaspar.txt</a> <br>
-  - Estimated transition probabilities over 1 (stepm) months: <a href="biaspar/pijrbiaspar.txt">biaspar/pijrbiaspar.txt</a><br>
-  - Stable prevalence in each health state: <a href="biaspar/plrbiaspar.txt">biaspar/plrbiaspar.txt</a> <br>
- - Life expectancies by age and initial health status (estepm= 1 months):    <a href="biaspar/erbiaspar.txt">biaspar/erbiaspar.txt</a> <br>
-</li> 
-<ul><li><b>Graphs</b></li><p><br>- Pij or Conditional probabilities to be observed in state j being in state i, 1 (stepm) months before: biaspar/pebiaspar11.png<br> <img src="biaspar/pebiaspar11.png"><br>- Pij or Conditional probabilities to be observed in state j being in state i 1 (stepm) months before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: biaspar/pebiaspar12.png<br> <img src="biaspar/pebiaspar12.png"><br>- Stable prevalence in each health state : pbiaspar/pbiaspar11.png<br> <img src="biaspar/pbiaspar11.png">
-<br>- Health life expectancies by age and initial health state (1): biaspar/expbiaspar11.png <br> <img src="biaspar/expbiaspar11.png">
-<br>- Health life expectancies by age and initial health state (2): biaspar/expbiaspar21.png <br> <img src="biaspar/expbiaspar21.png"></ul>
-<br><li><h4> <a name='secondorder'>Result files (second order: variances)</a></h4>
- - Parameter file with estimated parameters and covariance matrix: <a href="rbiaspar.imach">rbiaspar.imach</a> <br>
- - Variance of one-step probabilities: <a href="biaspar/probrbiaspar.txt">biaspar/probrbiaspar.txt</a> <br>
- - Variance-covariance of one-step probabilities: <a href="biaspar/probcovrbiaspar.txt">biaspar/probcovrbiaspar.txt</a> <br>
- - Correlation matrix of one-step probabilities: <a href="biaspar/probcorrbiaspar.txt">biaspar/probcorrbiaspar.txt</a> <br>
- - Variances and covariances of life expectancies by age and initial health status (estepm=1 months): <a href="biaspar/vrbiaspar.txt">biaspar/vrbiaspar.txt</a><br>
- - Health expectancies with their variances (no covariance): <a href="biaspar/trbiaspar.txt">biaspar/trbiaspar.txt</a> <br>
- - Standard deviation of stable prevalences: <a href="biaspar/vplrbiaspar.txt">biaspar/vplrbiaspar.txt</a> <br>
- <ul><li><b>Graphs</b></li><p><br>- Observed (cross-sectional) and period (incidence based) prevalence (with 95% confidence interval) in state (1): biaspar/vbiaspar11.png <br><img src="biaspar/vbiaspar11.png"><br>- Observed (cross-sectional) and period (incidence based) prevalence (with 95% confidence interval) in state (2): biaspar/vbiaspar21.png <br><img src="biaspar/vbiaspar21.png">
-<br>- Total life expectancy by age and health expectancies in states (1) and (2): biaspar/ebiaspar1.png<br><img src="biaspar/ebiaspar1.png"></ul>
-<li><h4> Computing and drawing one step probabilities with their confidence intervals</h4></li>
-
-
-<li><h4> <a href="biaspar-cov.htm">Matrix of variance-covariance of pairs of step probabilities (drawings)</a></h4></li>
-
-<li><h4> Computing probabilities of dying over estepm months as a weighted average (i.e global mortality independent of initial healh state)</h4></li>
-
-<br>-stablbased-  <br>
-
-<br> File (multiple files are possible if covariates are present): <A href="biaspar/prmorprev1-stablbased-rbiaspar.txt">biaspar/prmorprev1-stablbased-rbiaspar.txt</a>
-
-<br> Probability is computed over estepm=1 months. <br> <img src="biaspar/varmuptjgr-stablbased-biaspar1.png"> <br>
-<br>Local time at start Thu Feb 09 13:51:49 2006
-<br>Local time at end   Thu Feb 09 14:44:03 2006
-<br>
\ No newline at end of file
