March 2015
+July 2017
Until June 2004 the installation did consist in a zip file which had to be extracted in the directory of your choice. But with version 0.98d and above IMaCh we are using a windows installer (Inno setup 5.5.5). @@ -93,12 +93,12 @@ temporarly, to Administrator privileges
Old Windows versions are accessible here. +
Very old (historical) Windows versions are accessible here. -
-It take a litle more time to get version of Gnuplot 4.6.5+ for Mac -OS/X and to compile it on a MaC. Currently graphs are output as png -files. We will probably moved to svg because the svg format is -scalable and thus figures are easier to improve and to insert in other -documents. +It take a litle more time to get version of Gnuplot 5+ for Mac OS/X +and to compile it on a MaC. Currently graphs are output as svg +because the svg format is scalable and thus figures are easier to +improve and to insert in other documents. Sometimes the svg file is to +big and is replaced by a png binary file. But you can get any other +format with gnuplot (for example, on Emacs with gnuplot-mode, just +edit the .gp file, send the first "cd " line to change to current +directory, move to corresponding line of the plot, send the plot line +to gnuplot, visualize on the screen, change the terminal as well as +plot file names).
-You can download below a dmg file, for example imach0.98nX.dmg and install +You can download below a dmg file, for example imach0.99X.dmg and install it. Like on Windows, two sub-directories are created bin and html . In the bin subdirectory you will find two executables imach itself and @@ -222,53 +227,33 @@ editing/viewing the results (with your b
-New (March 2015) You -can download below a binary tar file for -respectively a 32 bits or 64 bits Linux bo, for example: -imach-Linux-0.98p0-linux-i586-bin.tar.bz2 and -imach-Linux-0.98p0-linux-x86-64-bin.tar.bz2 - -
The binaries have been crosscompiled with gcc on my OS/X Mac. -Each binary contains two directories bin -and html/doc . In the bin subdirectory you will find -the imach executable and in html/doc -the biaspar.imach test parameter file and its corresponding -data file data1.txt. In order to run the test the command -is ./bin/imach ./html/doc/biaspar.imach
+New (July 2017) You +can download below a binary rpm file for a 64 +bits Linux, for example: imach-0.99r14-1.x86-64.rpm + +
The Windows binaries have been compiled with native Intel Compiler +on my OS/X Mac using Virtual Box and a Windows 8. Each binary +contains two directories bin and html/doc . In the +bin subdirectory you will find the imach executable and +in html/doc the biaspar.imach test parameter file +and its corresponding data file data1.txt. In order to run +the test the command is ./bin/imach +./html/doc/biaspar.imach
gnuplot should be installed otherwise at the end of the run (optimization and calculations last at least 7 minutes on today most efficient hardwares) the command gnuplot biaspar.gp will fail. If successful, typing e will open biaspar.htm with your browser and all the results - including graphs generated by gnuplot will appear. Please - subscribe to the mailing - list imach-users@listes.ined.fr for comments and - reports on the performance (see the Performance section of - the wiki). + including graphs generated by gnuplot will appear. -
-
Differences between efficiency of binary versions, related to +former errors in the likelihood optimizations algorithms, have be +discussed at REVES 2015 meeting in Singapore.
| 0.98p0 | Intel Compiler 2015 with VisualStudio2013 | -imach-0.98p0-ilc-setup.exe | +imach-0.98p0-ilc-setup.exe | c4c8d47d24c76f6d2a5b0bfc52c43395 | |
| 0.98q0 | Intel Compiler 2015 with VisualStudio2013 | -imach-0.98q0-ilc-setup.exe | +imach-0.98q0-ilc-setup.exe | a7d40b3288d84187633a07289492f7dd | |
| 0.98p0 | Apple LLVM version 6.0 (clang-600.0.56) | -imach0.98p0.dmg | +imach0.98p0.dmg | 94e75fe3d141d9e5394ce3c53b98b987 | |
| 0.98q0 | Apple LLVM version 6.0 (clang-600.0.56) | -imach0.98q0.dmg | +imach0.98q0.dmg | b4dbd03d9bb2039cfc6a013411789ad6 | |
| 0.98p0 | gcc-4.8.1-for-linux64 | -imach-Linux-0.98p0-linux-x86-64-bin.tar.bz2 | +imach-Linux-0.98p0-linux-x86-64-bin.tar.bz2 | 0974bcf30596f94f97d0e80acaf5a1bb | |
| 0.98q0 | gcc-4.8.1-for-linux64 | -imach-Linux-0.98q0-linux-x86-64-bin.tar.bz2 | +imach-Linux-0.98q0-linux-x86-64-bin.tar.bz2 | 769f1153e78e6dd34d483aaa9fddd50b | |
| 0.98p0 | gcc-4.8.1-for-linux32 | -imach-Linux-0.98p0-linux-i586-bin.tar.bz2 | +imach-Linux-0.98p0-linux-i586-bin.tar.bz2 | 034fe6ca6dfeb84eb2d735dea7ad7a9b | |
| 0.98q0 | gcc-4.8.1-for-linux32 | -imach-Linux-0.98q0-linux-i586-bin.tar.bz2 | +imach-Linux-0.98q0-linux-i586-bin.tar.bz2 | 0d9c4d982ea43eda4b2dd058441459b3 |
Other downloads - and bugs reported
+
Download (Old + download) and bugs reported
Click here to access to the detailed documentation
@@ -368,32 +355,36 @@ here to access to the detailed documenta granted by the Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121.Our work is copyrighted as a GNU software product, i.e. program and -software can be distributed freely for non commercial use, but -actually some sources are not widely distributed today because they -borrow some codes from the book "Numerical Recipes in C" which is -copyrighted. If you are an owner of theses sources you can get our -sources by asking us with a simple justification (name, email, +software can be distributed freely for non commercial use. We used +some codes from the first book "Numerical Recipes in C" (Press et al, +1992) which is copyrighted. Today, the code of the optimization +programme has been so altered and many bugs have been fixed, +see communication +at the 2015 REVES meeting in Singapore) that we consider that we are +only in debt of the algorithm which has been published. If you want to +get our sources, please ask us with a simple justification (name, +email, Institute) mailto:imach-dev@listes.ined.fr
-Today we are two developpers only but we already use a private CVS -server. The CVS server will be freely accessible as soon as we have -replaced "Numerical Recipes in C maximization routines" with -equivalent routines from the new GNU scientific library. - -
Latest documentation can be accessed at Latest documentation can be accessed on the wiki at http://euroreves.ined.fr/imach/wiki/index.php/Documentation
There is a public mailing list of IMaCh's users. You can subscribe by sending a mail to imach-users-subscribe@listes.ined.fr (and unsubscribe with imach-users-unsubscribe@listes.ined.fr -
+href=mailto:imach-users-unsubscribe@listes.ined.fr>imach-users-unsubscribe@listes.ined.fr) + for help, comments and + reports on the performance (see the Performance section of + the wiki). Archives can be accessed at https://listes.ined.fr/arc/imach-users +If you ask for help, it is usually easier to send the parameter file, the .log file as well as some records of the datafile.