--- imach/src/ChangeLog 2006/03/15 17:59:29 1.23 +++ imach/src/ChangeLog 2022/09/11 07:57:18 1.60 @@ -1,3 +1,659 @@ +2022-09-11 Nicolas Brouard + + * imach.c (Module): Adding timevarying products of any kinds, + should work before shifting cotvar from ncovcol+nqv columns in + order to have a correspondance between the column of cotvar and + the id of column. + +2022-09-09 Nicolas Brouard + + * imach.c (Module): Many improvements for fixing products of fixed + timevarying as well as fixed * fixed, and test with quantitative + covariate. + +2022-09-04 Nicolas Brouard + + * imach.c (Module): Now the easy runs i.e. without result or + model=1+age only did not work. The defautl combination should be 1 + and not 0 because everything hasn't been tranformed yet. + +2022-09-02 Nicolas Brouard + + * imach.c: Version 0.99r35 because it outputs same results with + 1+age+V1+V1*age for females and 1+age for females only + (education=1 noweight) + +2022-08-31 Nicolas Brouard + + * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34 + +2022-08-21 Nicolas Brouard + + * imach.c (Module): Version 0.99r33 A lot of changes in + reassigning covariates: my first idea was that people will always + use the first covariate V1 into the model but in fact they are + producing data with many covariates and can use an equation model + with some of the covariate; it means that in a model V2+V3 instead + of codtabm(k,Tvaraff[j]) which calculates for combination k, for + three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact + the equation model is restricted to two variables only (V2, V3) + and the combination for V2 should be codtabm(k,1) instead of + (codtabm(k,2), and the code should be + codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been + made. All of these should be simplified once a day like we did in + hpxij() for example by using precov[nres] which is computed in + decoderesult for each nres of each resultline. Loop should be done + on the equation model globally by distinguishing only product with + age (which are changing with age) and no more on type of + covariates, single dummies, single covariates. + +2022-08-06 Nicolas Brouard + + * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function + +2022-08-03 Nicolas Brouard + + * imach.c (Module): Many errors in graphs fixed with Vn*age covariates. + +2022-07-25 Brouard Nicolas + + * imach.c (Module): Error cptcovn instead of nsd in bmij (was + coredumped, revealed by Feiuno, thank you. + +2022-07-23 Nicolas Brouard + + * r29 W and not sqrt(Wald) + +2022-07-22 Nicolas Brouard + + * imach.c (Module): Output of Wald test in the htm file and not only in the log. + +2022-06-02 Brouard Nicolas + + * imach.c (Module): Adding the Wald tests from the log to the main + htm for better display of the maximum likelihood estimators. + +2022-05-30 Brouard Nicolas + + * imach.c: With products of covariates (age or dummies or + quantitatives), estimates of parameters were good but when + estimating variances the positions of newly created covariates + were wrongly assigned and results were wrong. Thank to Feinua_Sun! + +2022-05-24 Nicolas Brouard + + * imach.c (Module): Some attempts to find a bug of wrong estimates + of confidencce intervals with product in the equation modelC + +2022-05-15 Nicolas Brouard + + * imach.c (Module): Some minor improvements + +2022-04-13 Brouard Nicolas + + * imach.c (Module): Adding link to text data files + +2022-04-11 Nicolas Brouard + + * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed + +2022-04-05 Brouard Nicolas + + * imach.c (Module): Fixed covariates (dummy or quantitative) + with missing values have never been allowed but are ERRORS and + program quits. Standard deviations of fixed covariates were + wrongly computed. Mean and standard deviations of time varying + covariates are still not computed. + +2022-03-17 Brouard Nicolas + + * 99r25 Improvements in fixing discrepancies between covariates + missing in result line but in model. + +*Wed Mar 31 2021 Nicolas Brouard + * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett + +*2021-03-08 Nicolas Brouard + + * ./ (Module): Fixed bug on result: + +*2021-02-20 Nicolas Brouard + + * imach.c (Module): Fix bug on quitting after result lines! + (Module): Version 0.99r21 + +2021-02-12 Nicolas Brouard + + * imach.c (Module): The use of a Windows BOM (huge) file is now an error + + +2021-02-11 Nicolas Brouard + + * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. + +2020-02-22 Brouard Nicolas + + * (Module): imach.c Update mle=-3 (for computing Life expectancy + and life table from the data without any state) + +2019-05-20 Brouard Nicolas + + * version.h: Summary: version 0.99.r19 + + * imach.c: Summary: Projection syntax simplified + We can now start projections, forward or backward, from the mean date + of inteviews up to or down to a number of years of projection: + prevforecast=1 yearsfproj=15.3 mobil_average=0 + or + prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 + or + prevbackcast=1 yearsbproj=12.3 mobil_average=1 + or + prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 + +2019-05-18 Brouard Nicolas + + * imach.c: Summary: doxygen tex bug + +2019-05-16 Brouard Nicolas + + * imach.c: Summary: There was some wrong lines added + +2019-05-09 Brouard Nicolas + + * Makefile, imach.c: *** empty log message *** + + * ChangeLog: Summary: C= + + * imach.c: Summary: Some updates + + * imach.c: Summary: Before ncovmax + + * version.h: *** empty log message *** + + * imach.c: Summary: 0.99r18 unlimited number of individuals + The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. + +2018-12-13 Brouard Nicolas + + * imach.c: Summary: Bug for young ages (<-30) will be in r17 + +2018-12-05 Brouard Nicolas + + * Makefile: Summary: 0.99r16 + +2018-05-02 Brouard Nicolas + + * imach.c: Summary: Some bugs fixed + +2018-05-02 Brouard Nicolas + + * imach.c: Summary: Bug for young ages (<-30) will be in r17 + +2018-05-02 Brouard Nicolas + + * imach.c: Summary: Some bugs fixed + +2018-05-01 Brouard Nicolas + + * imach.c: + Summary: Bug fixed by providing frequencies only for non missing covariates + +2018-04-27 Brouard Nicolas + + * imach.c: Summary: some minor bugs + +2018-04-21 Brouard Nicolas + + * README.txt: *** empty log message *** + + * imach.c: Summary: Some bugs fixed, valgrind tested + +2018-04-20 Brouard Nicolas + + * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 + + * imach.c: + Summary: Computing mean and stdeviation of fixed quantitative variables + +2018-04-19 Brouard Nicolas + + * imach.c: Summary: Some minor bugs fixed + + * version.h: *** empty log message *** + +2018-02-27 Brouard Nicolas + + * imach.c: *** empty log message *** + + * imach.c: Summary: Adding second argument for quitting + +2018-02-21 Brouard Nicolas + + * Makefile, README.txt, imach.c: Summary: 0.99r15 + New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c + +2017-07-20 Brouard Nicolas + + * imach.c: Summary: temporary working + +2017-07-19 Brouard Nicolas + + * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) + +2017-07-17 Brouard Nicolas + + * imach.c: Summary: BOM files can be read now + +2017-06-30 Brouard Nicolas + + * imach.c: Summary: Graphs improvements + + * imach.c: Summary: Saito's color + +2017-06-29 Brouard Nicolas + + * imach.c: Summary: Version 0.99r14 + +2017-06-27 Brouard Nicolas + + * imach.c: Summary: More documentation on projections + + * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) + + * imach.c: Summary: Some bug with rint + +2017-05-24 Brouard Nicolas + + * imach.c: *** empty log message *** + +2017-05-23 Brouard Nicolas + + * imach.c: Summary: Code into subroutine, cleanings + +2017-05-18 Brouard Nicolas + + * imach.c: + Summary: backprojection and confidence intervals of backprevalence + +2017-05-13 Brouard Nicolas + + * imach.c: Summary: temporary save for backprojection + + * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) + +2017-04-26 Brouard Nicolas + + * imach.c: Summary: imach 0.99r13 Some bugs fixed + + * imach.c: Summary: Labels in graphs + +2017-04-24 Brouard Nicolas + + * imach.c: Summary: to save + +2017-04-18 Brouard Nicolas + + * imach.c: *** empty log message *** + +2017-04-05 Brouard Nicolas + + * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 + +2017-04-04 Brouard Nicolas + + * imach.c: Summary: Gnuplot indexations fixed (humm) + + * imach.c: + Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 + +2017-04-03 Brouard Nicolas + + * imach.c: Summary: Version 0.99r12 + Some cleanings, conformed with updated documentation. + +2017-03-30 Brouard Nicolas + + * version.h: *** empty log message *** + + * version.h: Summary:0.99r11 + +2017-03-29 Brouard Nicolas + + * imach.c: Summary: Temp + +2017-03-27 Brouard Nicolas + + * imach.c: Summary: Temporary + +2017-03-08 Brouard Nicolas + + * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed + + * imach.c: Summary: Fixing data parameter line + +2016-12-15 Brouard Nicolas + + * imach.c: Summary: 0.99 in progress + +2016-09-15 Brouard Nicolas + + * imach.c: *** empty log message *** + + * imach.c: Summary: not working + +2016-09-08 Brouard Nicolas + + * imach.c: Summary: continue + +2016-09-07 Brouard Nicolas + + * imach.c: Summary: Starting values from frequencies + + * imach.c: *** empty log message *** + +2016-09-02 Brouard Nicolas + + * imach.c: *** empty log message *** + +2016-08-30 Brouard Nicolas + + * imach.c: Summary: Fixing a lots + +2016-08-29 Brouard Nicolas + + * imach.c: Summary: gnuplot problem in Back projection to fix + + * imach.c: Summary: Better + +2016-08-26 Brouard Nicolas + + * imach.c: + Summary: Improvement in Powell output in order to copy and paste + + * imach.c: Summary: Starting tests of 0.99 + + * imach.c: Summary: to valgrind + +2016-08-25 Brouard Nicolas + + * imach.c: *** empty log message *** + +2016-08-23 Brouard Nicolas + + * imach.c: *** empty log message *** + + * imach.c: Summary: not working + +2016-08-22 Brouard Nicolas + + * imach.c: Summary: not working + + * imach.c: Summary: Not working + +2016-07-23 Brouard Nicolas + + * imach.c: Summary: Completing for func too + +2016-07-22 Brouard Nicolas + + * imach.c: Summary: Fixing some arrays, still debugging + +2016-07-21 Brouard Nicolas + + * imach.c: + Summary: 0.99 working (more or less) for Asian Workshop on multitate methods + +2016-07-12 Brouard Nicolas + + * imach.c: Summary: temp + + * imach.c: Summary: saving but not running + +2016-07-01 Brouard Nicolas + + * imach.c: Summary: Fixes + +2016-02-19 Brouard Nicolas + + * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 + + * setup.iss, Makefile, version.h: *** empty log message *** + + * imach.c: Summary: temporary + +2016-02-17 Brouard Nicolas + + * imach.c: Summary: Probably last 0.98 stable version 0.98r6 + +2016-02-16 Brouard Nicolas + + * imach.c: Summary: minor bug + + * imach.c: Summary: 0.99r2 + +2016-02-15 Brouard Nicolas + + * imach.c: *** empty log message *** + +2016-02-12 Brouard Nicolas + + * imach.c: Summary: 0.99 Back projections + +2015-12-23 Brouard Nicolas + + * imach.c: Summary: Experimental backcast + +2015-12-18 Brouard Nicolas + + * imach.c: Summary: 0.98r4 Warning and status=-2 + + Version 0.98r4 is now: + - displaying an error when status is -1, date of interview unknown and date of death known; + - permitting a status -2 when the vital status is unknown at a known date of right truncation. + Older changes concerning s=-2, dating from 2005 have been supersed. + + * Makefile: *** empty log message *** + +2015-12-16 Brouard Nicolas + + * Makefile: *** empty log message *** + + * imach.c: Summary: 0.98r4 working + + * Makefile: Summary: linuxrpm added + + * Makefile: *** empty log message *** + + * imach.c: Summary: temporary not working + +2015-12-11 Brouard Nicolas + + * imach.c: Summary: 0.98r4 + +2015-12-08 Brouard Nicolas + + * Makefile: *** empty log message *** + +2015-11-21 Brouard Nicolas + + * Makefile: + Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more + + * imach.c: Summary: minor typo + + * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional + + Author: Nicolas Brouard + +2015-11-18 Brouard Nicolas + + * imach.c: Summary: Start working on projected prevalences + +2015-11-17 Brouard Nicolas + + * imach.c: Summary: Adding ftolpl parameter + Author: N Brouard + + We had difficulties to get smoothed confidence intervals. It was due + to the period prevalence which wasn't computed accurately. The inner + parameter ftolpl is now an outer parameter of the .imach parameter + file after estepm. If ftolpl is small 1.e-4 and estepm too, + computation are long. + + * version.h: *** empty log message *** + + * imach.c: Summary: temporary + +2015-10-27 Brouard Nicolas + + * Makefile: *** empty log message *** + + * setup.iss.in: Summary: some new subdirs + + * imach.c: *** empty log message *** + + * setup.iss.in: + Summary: Adding gnuplot 5.1 with bin and etc for pango fonts + +2015-10-24 Brouard Nicolas + + * imach.c: *** empty log message *** + +2015-10-23 Brouard Nicolas + + * imach.c: + Summary: 0.98r3 some clarification for graphs on likelihood contributions + +2015-10-01 Brouard Nicolas + + * imach.c: Summary: Some new graphs of contribution to likelihood + +2015-09-30 Brouard Nicolas + + * Makefile: + Summary: Version read from version.h, itself read with cmake + + * imach.c: Summary: looking at better estimation of the hessian + + Also a better criteria for convergence to the period prevalence And + therefore adding the number of years needed to converge. (The + prevalence in any alive state shold sum to one + + * Makefile: *** empty log message *** + +2015-09-22 Brouard Nicolas + + * imach.c: + Summary: Adding some overall graph on contribution to likelihood. Might change + +2015-09-15 Brouard Nicolas + + * Makefile: *** empty log message *** + + * imach.c: Summary: 0.98r0 + + - Some new graphs like survival functions + - Some bugs fixed like model=1+age+V2. + + * ChangeLog, Makefile: Summary: 0.98r0 + + * CMakeLists.txt: Summary: Some tests for setup.iss + +2015-09-15 Nicolas J Brouard + + * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc + +2015-08-18 Nicolas J Brouard + + * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. + +2015-08-03 Nicolas J Brouard + + * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) + +2014-12-16 Nicolas J Brouard + + * imach.c (Module): Merging 1.61 to 1.162 + +2014-09-02 Nicolas J Brouard + + * prevlim.h (Module): + +2014-01-26 Nicolas J Brouard + + * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... + (Module): Version 0.98nR Running ok, but output format still only works for three covariates. + +2010-04-29 brouard + + * imach.c (Module): Checking covariates for more complex models + than V1+V2. A lot of change to be done. Unstable. + +2010-04-26 brouard + + * imach.c (Module): merging some libgsl code. Fixing computation + of likelione (using inter/intrapolation if mle = 0) in order to + get same likelihood as if mle=1. + Some cleaning of code and comments added. + +2009-10-29 brouard + + * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. + +2006-06-30 Brouard Nicolas + + * imach.c (Module): Clarifications on computing e.j + +2006-04-28 Brouard Nicolas + + * imach.c (Module): Yes the sum of survivors was wrong since + imach-114 because nhstepm was no more computed in the age + loop. Now we define nhstepma in the age loop. + (Module): In order to speed up (in case of numerous covariates) we + compute health expectancies (without variances) in a first step + and then all the health expectancies with variances or standard + deviation (needs data from the Hessian matrices) which slows the + computation. + In the future we should be able to stop the program is only health + expectancies and graph are needed without standard deviations. + +2006-04-04 LIEVRE Agnes + + * imach.iss (Module): + + * imach.c (Module): bugs in evsi + population file added in htm output file + +2006-03-22 LIEVRE Agnes + + * imach.c (Module): + +2006-03-20 Brouard Nicolas + + * imach.c (Module): changed, corresponds to .htm file + name. <head> headers where missing. + + * Makefile (Module): 0.98g + + * imach.c (Module): Weights can have a decimal point as for + English (a comma might work with a correct LC_NUMERIC environment, + otherwise the weight is truncated). + Modification of warning when the covariates values are not 0 or + 1. + Version 0.98g + +2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> + + * imach.c (Module): Comments concerning covariates added + + * noreg-setup.iss (Module): Version 0.98f + + * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup + + * imach.c (Module): refinements in the computation of lli if + status=-2 in order to have more reliable computation if stepm is + not 1 month. Version 0.98f + 2006-03-15 Brouard Nicolas <brouard@localhost> * imach.c (Module): Bug if status = -2, the loglikelihood was @@ -174,35 +830,11 @@ probability to die within a month. Thanks to Chris Jackson for correcting this bug. Former versions increased mortality artificially. The bad side is that we add another loop - - which slows down the processing. The difference can be up to 10% - - lower mortality. - - - - 2002-05-30 <brouard@BROUARD> - - - - - - * - - - - - + * imach.c (Module): Add correlation matrix of one-step - - probabilities and covariance matrix - - - - - +