--- imach/src/ChangeLog 2022/04/11 16:17:28 1.49 +++ imach/src/ChangeLog 2023/05/23 12:25:36 1.67 @@ -1,749 +1,889 @@ -2022-04-11 Nicolas Brouard <brouard@ined.fr> - - * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed - -2022-04-05 Brouard Nicolas <brouard@ined.fr> - - * imach.c (Module): Fixed covariates (dummy or quantitative) - with missing values have never been allowed but are ERRORS and - program quits. Standard deviations of fixed covariates were - wrongly computed. Mean and standard deviations of time varying - covariates are still not computed. - -2022-03-17 Brouard Nicolas <brouard@ined.fr> - - * 99r25 Improvements in fixing discrepancies between covariates - missing in result line but in model. - -*Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> - * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett - -*2021-03-08 Nicolas Brouard <brouard@ined.fr> - - * ./ (Module): Fixed bug on result: - -*2021-02-20 Nicolas Brouard <brouard@ined.fr> - - * imach.c (Module): Fix bug on quitting after result lines! - (Module): Version 0.99r21 - -2021-02-12 Nicolas Brouard <brouard@ined.fr> - - * imach.c (Module): The use of a Windows BOM (huge) file is now an error - - -2021-02-11 Nicolas Brouard <brouard@ined.fr> - - * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. - -2020-02-22 Brouard Nicolas <brouard@ined.fr> - - * (Module): imach.c Update mle=-3 (for computing Life expectancy - and life table from the data without any state) - -2019-05-20 Brouard Nicolas <brouard@ined.fr> - - * version.h: Summary: version 0.99.r19 - - * imach.c: Summary: Projection syntax simplified - We can now start projections, forward or backward, from the mean date - of inteviews up to or down to a number of years of projection: - prevforecast=1 yearsfproj=15.3 mobil_average=0 - or - prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 - or - prevbackcast=1 yearsbproj=12.3 mobil_average=1 - or - prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 - -2019-05-18 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: doxygen tex bug - -2019-05-16 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: There was some wrong lines added - -2019-05-09 Brouard Nicolas <brouard@ined.fr> - - * Makefile, imach.c: *** empty log message *** - - * ChangeLog: Summary: C= - - * imach.c: Summary: Some updates - - * imach.c: Summary: Before ncovmax - - * version.h: *** empty log message *** - - * imach.c: Summary: 0.99r18 unlimited number of individuals - The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. - -2018-12-13 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Bug for young ages (<-30) will be in r17 - -2018-12-05 Brouard Nicolas <brouard@ined.fr> - - * Makefile: Summary: 0.99r16 - -2018-05-02 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Some bugs fixed - -2018-05-02 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Bug for young ages (<-30) will be in r17 - -2018-05-02 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Some bugs fixed - -2018-05-01 Brouard Nicolas <brouard@ined.fr> - - * imach.c: - Summary: Bug fixed by providing frequencies only for non missing covariates - -2018-04-27 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: some minor bugs - -2018-04-21 Brouard Nicolas <brouard@ined.fr> - - * README.txt: *** empty log message *** - - * imach.c: Summary: Some bugs fixed, valgrind tested - -2018-04-20 Brouard Nicolas <brouard@ined.fr> - - * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 - - * imach.c: - Summary: Computing mean and stdeviation of fixed quantitative variables - -2018-04-19 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Some minor bugs fixed - - * version.h: *** empty log message *** - -2018-02-27 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - - * imach.c: Summary: Adding second argument for quitting - -2018-02-21 Brouard Nicolas <brouard@ined.fr> - - * Makefile, README.txt, imach.c: Summary: 0.99r15 - New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c - -2017-07-20 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: temporary working - -2017-07-19 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) - -2017-07-17 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: BOM files can be read now - -2017-06-30 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Graphs improvements - - * imach.c: Summary: Saito's color - -2017-06-29 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Version 0.99r14 - -2017-06-27 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: More documentation on projections - - * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) - - * imach.c: Summary: Some bug with rint - -2017-05-24 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - -2017-05-23 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Code into subroutine, cleanings - -2017-05-18 Brouard Nicolas <brouard@ined.fr> - - * imach.c: - Summary: backprojection and confidence intervals of backprevalence - -2017-05-13 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: temporary save for backprojection - - * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) - -2017-04-26 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: imach 0.99r13 Some bugs fixed - - * imach.c: Summary: Labels in graphs - -2017-04-24 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: to save - -2017-04-18 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - -2017-04-05 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 - -2017-04-04 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Gnuplot indexations fixed (humm) - - * imach.c: - Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 - -2017-04-03 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Version 0.99r12 - Some cleanings, conformed with updated documentation. - -2017-03-30 Brouard Nicolas <brouard@ined.fr> - - * version.h: *** empty log message *** - - * version.h: Summary:0.99r11 - -2017-03-29 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Temp - -2017-03-27 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Temporary - -2017-03-08 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed - - * imach.c: Summary: Fixing data parameter line - -2016-12-15 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: 0.99 in progress - -2016-09-15 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - - * imach.c: Summary: not working - -2016-09-08 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: continue - -2016-09-07 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Starting values from frequencies - - * imach.c: *** empty log message *** - -2016-09-02 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - -2016-08-30 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Fixing a lots - -2016-08-29 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: gnuplot problem in Back projection to fix - - * imach.c: Summary: Better - -2016-08-26 Brouard Nicolas <brouard@ined.fr> - - * imach.c: - Summary: Improvement in Powell output in order to copy and paste - - * imach.c: Summary: Starting tests of 0.99 - - * imach.c: Summary: to valgrind - -2016-08-25 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - -2016-08-23 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - - * imach.c: Summary: not working - -2016-08-22 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: not working - - * imach.c: Summary: Not working - -2016-07-23 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Completing for func too - -2016-07-22 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Fixing some arrays, still debugging - -2016-07-21 Brouard Nicolas <brouard@ined.fr> - - * imach.c: - Summary: 0.99 working (more or less) for Asian Workshop on multitate methods - -2016-07-12 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: temp - - * imach.c: Summary: saving but not running - -2016-07-01 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Fixes - -2016-02-19 Brouard Nicolas <brouard@ined.fr> - - * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 - - * setup.iss, Makefile, version.h: *** empty log message *** - - * imach.c: Summary: temporary - -2016-02-17 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Probably last 0.98 stable version 0.98r6 - -2016-02-16 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: minor bug - - * imach.c: Summary: 0.99r2 - -2016-02-15 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - -2016-02-12 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: 0.99 Back projections - -2015-12-23 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Experimental backcast - -2015-12-18 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: 0.98r4 Warning and status=-2 - - Version 0.98r4 is now: - - displaying an error when status is -1, date of interview unknown and date of death known; - - permitting a status -2 when the vital status is unknown at a known date of right truncation. - Older changes concerning s=-2, dating from 2005 have been supersed. - - * Makefile: *** empty log message *** - -2015-12-16 Brouard Nicolas <brouard@ined.fr> - - * Makefile: *** empty log message *** - - * imach.c: Summary: 0.98r4 working - - * Makefile: Summary: linuxrpm added - - * Makefile: *** empty log message *** - - * imach.c: Summary: temporary not working - -2015-12-11 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: 0.98r4 - -2015-12-08 Brouard Nicolas <brouard@ined.fr> - - * Makefile: *** empty log message *** - -2015-11-21 Brouard Nicolas <brouard@ined.fr> - - * Makefile: - Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more - - * imach.c: Summary: minor typo - - * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional - - Author: Nicolas Brouard - -2015-11-18 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Start working on projected prevalences - -2015-11-17 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Adding ftolpl parameter - Author: N Brouard - - We had difficulties to get smoothed confidence intervals. It was due - to the period prevalence which wasn't computed accurately. The inner - parameter ftolpl is now an outer parameter of the .imach parameter - file after estepm. If ftolpl is small 1.e-4 and estepm too, - computation are long. - - * version.h: *** empty log message *** - - * imach.c: Summary: temporary - -2015-10-27 Brouard Nicolas <brouard@ined.fr> - - * Makefile: *** empty log message *** - - * setup.iss.in: Summary: some new subdirs - - * imach.c: *** empty log message *** - - * setup.iss.in: - Summary: Adding gnuplot 5.1 with bin and etc for pango fonts - -2015-10-24 Brouard Nicolas <brouard@ined.fr> - - * imach.c: *** empty log message *** - -2015-10-23 Brouard Nicolas <brouard@ined.fr> - - * imach.c: - Summary: 0.98r3 some clarification for graphs on likelihood contributions - -2015-10-01 Brouard Nicolas <brouard@ined.fr> - - * imach.c: Summary: Some new graphs of contribution to likelihood - -2015-09-30 Brouard Nicolas <brouard@ined.fr> - - * Makefile: - Summary: Version read from version.h, itself read with cmake - - * imach.c: Summary: looking at better estimation of the hessian - - Also a better criteria for convergence to the period prevalence And - therefore adding the number of years needed to converge. (The - prevalence in any alive state shold sum to one - - * Makefile: *** empty log message *** - -2015-09-22 Brouard Nicolas <brouard@ined.fr> - - * imach.c: - Summary: Adding some overall graph on contribution to likelihood. Might change - -2015-09-15 Brouard Nicolas <brouard@ined.fr> - - * Makefile: *** empty log message *** - - * imach.c: Summary: 0.98r0 - - - Some new graphs like survival functions - - Some bugs fixed like model=1+age+V2. - - * ChangeLog, Makefile: Summary: 0.98r0 - - * CMakeLists.txt: Summary: Some tests for setup.iss - -2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> - - * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc - -2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> - - * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. - -2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> - - * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) - -2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> - - * imach.c (Module): Merging 1.61 to 1.162 - -2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> - - * prevlim.h (Module): - -2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> - - * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... - (Module): Version 0.98nR Running ok, but output format still only works for three covariates. - -2010-04-29 brouard <brouard@ined.fr> - - * imach.c (Module): Checking covariates for more complex models - than V1+V2. A lot of change to be done. Unstable. - -2010-04-26 brouard <brouard@ined.fr> - - * imach.c (Module): merging some libgsl code. Fixing computation - of likelione (using inter/intrapolation if mle = 0) in order to - get same likelihood as if mle=1. - Some cleaning of code and comments added. - -2009-10-29 brouard <brouard@ined.fr> - - * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. - -2006-06-30 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): Clarifications on computing e.j - -2006-04-28 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): Yes the sum of survivors was wrong since - imach-114 because nhstepm was no more computed in the age - loop. Now we define nhstepma in the age loop. - (Module): In order to speed up (in case of numerous covariates) we - compute health expectancies (without variances) in a first step - and then all the health expectancies with variances or standard - deviation (needs data from the Hessian matrices) which slows the - computation. - In the future we should be able to stop the program is only health - expectancies and graph are needed without standard deviations. - -2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> - - * imach.iss (Module): - - * imach.c (Module): bugs in evsi + population file added in htm output file - -2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> - - * imach.c (Module): - -2006-03-20 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): <title> changed, corresponds to .htm file - name. <head> headers where missing. - - * Makefile (Module): 0.98g - - * imach.c (Module): Weights can have a decimal point as for - English (a comma might work with a correct LC_NUMERIC environment, - otherwise the weight is truncated). - Modification of warning when the covariates values are not 0 or - 1. - Version 0.98g - -2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> - - * imach.c (Module): Comments concerning covariates added - - * noreg-setup.iss (Module): Version 0.98f - - * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup - - * imach.c (Module): refinements in the computation of lli if - status=-2 in order to have more reliable computation if stepm is - not 1 month. Version 0.98f - -2006-03-15 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): Bug if status = -2, the loglikelihood was - computed as likelihood omitting the logarithm. Version O.98e - -2006-03-14 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): varevsij Comments added explaining the second - table of variances if popbased=1 . - (Module): Covariances of eij, ekl added, graphs fixed, new html link. - (Module): Function pstamp added - (Module): Version 0.98d - -2006-03-06 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): Variance-covariance wrong links and - varian-covariance of ej. is needed (Saito). - -2006-02-27 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): One freematrix added in mlikeli! - -2006-02-26 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): Some improvements in processing parameter - filename with strsep. - -2006-02-24 Brouard Nicolas <brouard@localhost> - - * imach.c (Module): Memory leaks checks with valgrind and: - datafile was not closed, some imatrix were not freed and on matrix - allocation too. - -2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> - - * strsep.c (Module): Inclusion because not in mingw32!!! - - * setup.iss.in (Module): IMACHSETUPVERSION added - - * noreg-setup.iss (Module): added to cvs tree - - * Makefile (Module): IMACHSETUPVERSION added - -2006-01-30 BROUARD Nicolas <brouard@localhost> - - * Makefile (Module, Module): Latest Makefile - - * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe - -2006-01-27 BROUARD Nicolas <brouard@localhost> - - * noreg-setup.iss (Module): ADDED - -2006-01-24 BROUARD Nicolas <brouard@localhost> - - * imach.c (Module): Comments (lines starting with a #) are allowed in data. - -2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> - - * Makefile (Module): Added Imach98.pmsp and howto crete a dmg - - * createdmg.sh (Module): Creates a dmg disk for MaC OS/X - -2005-09-30 <lievre@PC_00595> - - * imach.c (Module): sump fixed, loop imx fixed, and simplifications. - (Module): If the status is missing at the last wave but we know - that the person is alive, then we can code his/her status as -2 - (instead of missing=-1 in earlier versions) and his/her - contributions to the likelihood is 1 - Prob of dying from last - health status (= 1-p13= p11+p12 in the easiest case of somebody in - the healthy state at last known wave). Version is 0.98 - -2004-05-20 Brouard Nicolas <brouard@localhost> - - * imach.c (Repository): - Agnes added a direct estimation of mortality (without the need of - computing period prevalence and differential mortality). Thus here - is version 0.97a which has been distributed to some people at - REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of - mortality using covariates is not done today. Estimating direct - mortality is a very different process because it doesn't need - interpolation because it is easy to get the lx from the force of - the mortality mux in the simplest case as for a Gompertz (log mux - = a + b*x . But we have been able to incorporate the new code - within former imach program (0.96d) without deteriorating too much - the understanding of the program. - -2003-06-25 <brouard@BROUARD> - - * imach.c (Module): On windows (cygwin) function asctime_r doesn't - exist so I changed back to asctime which exists. - (Module): Version 0.96b - -2003-06-24 <brouard@BROUARD> - - * imach.c (Module): Some bugs corrected for windows. Also, when - mle=-1 a template is output in file "or"mypar.txt with the design - of the covariance matrix to be input. - -2003-06-25 Brouard Nicolas <brouard@homebrou> - - * imach.c (Repository): Duplicated warning errors corrected. - (Repository): Elapsed time after each iteration is now output. It - helps to forecast when convergence will be reached. Elapsed time - is stamped in powell. We created a new html file for the graphs - concerning matrix of covariance. It has extension -cov.htm. - -2003-06-23 Brouard Nicolas <brouard@homebrou> - - * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. - -2003-06-18 Brouard Nicolas <brouard@homebrou> - - * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 - -2003-06-17 Brouard Nicolas <brouard@homebrou> - - - * imach.c (Repository): Check when date of death was earlier that - current date of interview. It may happen when the death was just - prior to the death. In this case, dh was negative and likelihood - was wrong (infinity). We still send an "Error" but patch by - assuming that the date of death was just one stepm after the - interview. - (Repository): Because some people have very long ID (first column) - we changed int to long in num[] and we added a new lvector for - memory allocation. But we also truncated to 8 characters (left - truncation) - - (Repository): No more line truncation errors. - -2003-06-14 Brouard Nicolas <brouard@homebrou> - - * imach.c (Repository): Add of a routine likelione (likelihood - only once) which prints on a text file - (ilk) the contributions to the likelihood for each - individual/wave. - -2003-06-13 Brouard Nicolas <brouard@homebrou> - * imach.c (Repository): Replace "freqsummary" at a correct - place. It differs from routine "prevalence" which may be called - many times. Probs is memory consuming and must be used with - parcimony. - -2003-06-17 <brouard@BROUARD> - - * timeval.h (Module): Added included file to make use of - gettimeofday working on win32 with cygwin. - -2003-05-16 Brouard Nicolas <brouard@brouard> - * imach.c (Module): Insert of a warning if the delay between two - waves is negative. - - * imach.c (Module): - -2003-05-03 <brouard@BROUARD> - - * imach.c: Some cleaning - -2003-03-28 <brouard@BROUARD> - * imach.c (Module): In version up to 0.92 likelihood was computed - as if date of death was unknown. Death was treated as any other - health state: the date of the interview describes the actual state - and not the date of a change in health state. The former idea was - to consider that at each interview the state was recorded - (healthy, disable or death) and IMaCh was corrected; but when we - introduced the exact date of death then we should have modified - the contribution of an exact death to the likelihood. This new - contribution is smaller and very dependent of the step unit - stepm. It is no more the probability to die between last interview - and month of death but the probability to survive from last - interview up to one month before death multiplied by the - probability to die within a month. Thanks to Chris - Jackson for correcting this bug. Former versions increased - mortality artificially. The bad side is that we add another loop - which slows down the processing. The difference can be up to 10% - lower mortality. - -2002-05-30 <brouard@BROUARD> - * - * imach.c (Module): Add correlation matrix of one-step - probabilities and covariance matrix - - - - - +2023-05-23 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Fixed PROB_r + +2023-05-22 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): In the ILK....txt file, the number of columns + before the covariates values is dependent of the number of states (16+nlstate): 0.99r46 + +2023-05-08 Nicolas Brouard <brouard@ined.fr> + + * (Module): Error V0 when result:. and model 1+age+V1: fixed + +2023-04-29 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Inverting the model equation and fixingg bugs + in the drawings + "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2" + +2023-04-24 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): some bugs in printinggnuplot + +2022-09-19 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Version 0.99r42 needed a newer version of + Gnuplot. But newer version 0.99r43 should run with the Gnuplot + version 5.0 or 5.1 distributed with IMaCh. + +2022-09-18 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Fixing when a state in the data is 0 or higher + than lstate+ndeath. Fixing the plot of contribution to Likelihood. + +2022-09-16 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo + +2022-09-14 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo) + +2022-09-14 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Version 0.99r39 with colored dummy covariates + (fixed or time varying), using new last columns of + ILK_parameter.txt file. + +2022-09-11 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Adding timevarying products of any kinds, + should work before shifting cotvar from ncovcol+nqv columns in + order to have a correspondance between the column of cotvar and + the id of column. + (Module): Some cleaning and adding covariates in ILK.txt + +2022-09-09 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Many improvements for fixing products of fixed + timevarying as well as fixed * fixed, and test with quantitative + covariate. + +2022-09-04 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Now the easy runs i.e. without result or + model=1+age only did not work. The defautl combination should be 1 + and not 0 because everything hasn't been tranformed yet. + +2022-09-02 Nicolas Brouard <brouard@ined.fr> + + * imach.c: Version 0.99r35 because it outputs same results with + 1+age+V1+V1*age for females and 1+age for females only + (education=1 noweight) + +2022-08-31 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34 + +2022-08-21 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Version 0.99r33 A lot of changes in + reassigning covariates: my first idea was that people will always + use the first covariate V1 into the model but in fact they are + producing data with many covariates and can use an equation model + with some of the covariate; it means that in a model V2+V3 instead + of codtabm(k,Tvaraff[j]) which calculates for combination k, for + three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact + the equation model is restricted to two variables only (V2, V3) + and the combination for V2 should be codtabm(k,1) instead of + (codtabm(k,2), and the code should be + codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been + made. All of these should be simplified once a day like we did in + hpxij() for example by using precov[nres] which is computed in + decoderesult for each nres of each resultline. Loop should be done + on the equation model globally by distinguishing only product with + age (which are changing with age) and no more on type of + covariates, single dummies, single covariates. + +2022-08-06 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function + +2022-08-03 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Many errors in graphs fixed with Vn*age covariates. + +2022-07-25 Brouard Nicolas <brouard@brouard.name> + + * imach.c (Module): Error cptcovn instead of nsd in bmij (was + coredumped, revealed by Feiuno, thank you. + +2022-07-23 Nicolas Brouard <brouard@ined.fr> + + * r29 W and not sqrt(Wald) + +2022-07-22 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Output of Wald test in the htm file and not only in the log. + +2022-06-02 Brouard Nicolas <brouard@brouard.name> + + * imach.c (Module): Adding the Wald tests from the log to the main + htm for better display of the maximum likelihood estimators. + +2022-05-30 Brouard Nicolas <brouard@brouard.name> + + * imach.c: With products of covariates (age or dummies or + quantitatives), estimates of parameters were good but when + estimating variances the positions of newly created covariates + were wrongly assigned and results were wrong. Thank to Feinua_Sun! + +2022-05-24 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Some attempts to find a bug of wrong estimates + of confidencce intervals with product in the equation modelC + +2022-05-15 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Some minor improvements + +2022-04-13 Brouard Nicolas <brouard@brouard.name> + + * imach.c (Module): Adding link to text data files + +2022-04-11 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed + +2022-04-05 Brouard Nicolas <brouard@ined.fr> + + * imach.c (Module): Fixed covariates (dummy or quantitative) + with missing values have never been allowed but are ERRORS and + program quits. Standard deviations of fixed covariates were + wrongly computed. Mean and standard deviations of time varying + covariates are still not computed. + +2022-03-17 Brouard Nicolas <brouard@ined.fr> + + * 99r25 Improvements in fixing discrepancies between covariates + missing in result line but in model. + +*Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr> + * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett + +*2021-03-08 Nicolas Brouard <brouard@ined.fr> + + * ./ (Module): Fixed bug on result: + +*2021-02-20 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): Fix bug on quitting after result lines! + (Module): Version 0.99r21 + +2021-02-12 Nicolas Brouard <brouard@ined.fr> + + * imach.c (Module): The use of a Windows BOM (huge) file is now an error + + +2021-02-11 Nicolas Brouard <brouard@ined.fr> + + * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed. + +2020-02-22 Brouard Nicolas <brouard@ined.fr> + + * (Module): imach.c Update mle=-3 (for computing Life expectancy + and life table from the data without any state) + +2019-05-20 Brouard Nicolas <brouard@ined.fr> + + * version.h: Summary: version 0.99.r19 + + * imach.c: Summary: Projection syntax simplified + We can now start projections, forward or backward, from the mean date + of inteviews up to or down to a number of years of projection: + prevforecast=1 yearsfproj=15.3 mobil_average=0 + or + prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0 + or + prevbackcast=1 yearsbproj=12.3 mobil_average=1 + or + prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1 + +2019-05-18 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: doxygen tex bug + +2019-05-16 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: There was some wrong lines added + +2019-05-09 Brouard Nicolas <brouard@ined.fr> + + * Makefile, imach.c: *** empty log message *** + + * ChangeLog: Summary: C= + + * imach.c: Summary: Some updates + + * imach.c: Summary: Before ncovmax + + * version.h: *** empty log message *** + + * imach.c: Summary: 0.99r18 unlimited number of individuals + The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur. + +2018-12-13 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Bug for young ages (<-30) will be in r17 + +2018-12-05 Brouard Nicolas <brouard@ined.fr> + + * Makefile: Summary: 0.99r16 + +2018-05-02 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Some bugs fixed + +2018-05-02 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Bug for young ages (<-30) will be in r17 + +2018-05-02 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Some bugs fixed + +2018-05-01 Brouard Nicolas <brouard@ined.fr> + + * imach.c: + Summary: Bug fixed by providing frequencies only for non missing covariates + +2018-04-27 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: some minor bugs + +2018-04-21 Brouard Nicolas <brouard@ined.fr> + + * README.txt: *** empty log message *** + + * imach.c: Summary: Some bugs fixed, valgrind tested + +2018-04-20 Brouard Nicolas <brouard@ined.fr> + + * Makefile, README.txt, setup.iss: Summary: imach 0.99r16 + + * imach.c: + Summary: Computing mean and stdeviation of fixed quantitative variables + +2018-04-19 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Some minor bugs fixed + + * version.h: *** empty log message *** + +2018-02-27 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + + * imach.c: Summary: Adding second argument for quitting + +2018-02-21 Brouard Nicolas <brouard@ined.fr> + + * Makefile, README.txt, imach.c: Summary: 0.99r15 + New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c + +2017-07-20 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: temporary working + +2017-07-19 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?) + +2017-07-17 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: BOM files can be read now + +2017-06-30 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Graphs improvements + + * imach.c: Summary: Saito's color + +2017-06-29 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Version 0.99r14 + +2017-06-27 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: More documentation on projections + + * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow) + + * imach.c: Summary: Some bug with rint + +2017-05-24 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + +2017-05-23 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Code into subroutine, cleanings + +2017-05-18 Brouard Nicolas <brouard@ined.fr> + + * imach.c: + Summary: backprojection and confidence intervals of backprevalence + +2017-05-13 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: temporary save for backprojection + + * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed) + +2017-04-26 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: imach 0.99r13 Some bugs fixed + + * imach.c: Summary: Labels in graphs + +2017-04-24 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: to save + +2017-04-18 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + +2017-04-05 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1 + +2017-04-04 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Gnuplot indexations fixed (humm) + + * imach.c: + Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3 + +2017-04-03 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Version 0.99r12 + Some cleanings, conformed with updated documentation. + +2017-03-30 Brouard Nicolas <brouard@ined.fr> + + * version.h: *** empty log message *** + + * version.h: Summary:0.99r11 + +2017-03-29 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Temp + +2017-03-27 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Temporary + +2017-03-08 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed + + * imach.c: Summary: Fixing data parameter line + +2016-12-15 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: 0.99 in progress + +2016-09-15 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + + * imach.c: Summary: not working + +2016-09-08 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: continue + +2016-09-07 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Starting values from frequencies + + * imach.c: *** empty log message *** + +2016-09-02 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + +2016-08-30 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Fixing a lots + +2016-08-29 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: gnuplot problem in Back projection to fix + + * imach.c: Summary: Better + +2016-08-26 Brouard Nicolas <brouard@ined.fr> + + * imach.c: + Summary: Improvement in Powell output in order to copy and paste + + * imach.c: Summary: Starting tests of 0.99 + + * imach.c: Summary: to valgrind + +2016-08-25 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + +2016-08-23 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + + * imach.c: Summary: not working + +2016-08-22 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: not working + + * imach.c: Summary: Not working + +2016-07-23 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Completing for func too + +2016-07-22 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Fixing some arrays, still debugging + +2016-07-21 Brouard Nicolas <brouard@ined.fr> + + * imach.c: + Summary: 0.99 working (more or less) for Asian Workshop on multitate methods + +2016-07-12 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: temp + + * imach.c: Summary: saving but not running + +2016-07-01 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Fixes + +2016-02-19 Brouard Nicolas <brouard@ined.fr> + + * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7 + + * setup.iss, Makefile, version.h: *** empty log message *** + + * imach.c: Summary: temporary + +2016-02-17 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Probably last 0.98 stable version 0.98r6 + +2016-02-16 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: minor bug + + * imach.c: Summary: 0.99r2 + +2016-02-15 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + +2016-02-12 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: 0.99 Back projections + +2015-12-23 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Experimental backcast + +2015-12-18 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: 0.98r4 Warning and status=-2 + + Version 0.98r4 is now: + - displaying an error when status is -1, date of interview unknown and date of death known; + - permitting a status -2 when the vital status is unknown at a known date of right truncation. + Older changes concerning s=-2, dating from 2005 have been supersed. + + * Makefile: *** empty log message *** + +2015-12-16 Brouard Nicolas <brouard@ined.fr> + + * Makefile: *** empty log message *** + + * imach.c: Summary: 0.98r4 working + + * Makefile: Summary: linuxrpm added + + * Makefile: *** empty log message *** + + * imach.c: Summary: temporary not working + +2015-12-11 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: 0.98r4 + +2015-12-08 Brouard Nicolas <brouard@ined.fr> + + * Makefile: *** empty log message *** + +2015-11-21 Brouard Nicolas <brouard@ined.fr> + + * Makefile: + Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more + + * imach.c: Summary: minor typo + + * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional + + Author: Nicolas Brouard + +2015-11-18 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Start working on projected prevalences + +2015-11-17 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Adding ftolpl parameter + Author: N Brouard + + We had difficulties to get smoothed confidence intervals. It was due + to the period prevalence which wasn't computed accurately. The inner + parameter ftolpl is now an outer parameter of the .imach parameter + file after estepm. If ftolpl is small 1.e-4 and estepm too, + computation are long. + + * version.h: *** empty log message *** + + * imach.c: Summary: temporary + +2015-10-27 Brouard Nicolas <brouard@ined.fr> + + * Makefile: *** empty log message *** + + * setup.iss.in: Summary: some new subdirs + + * imach.c: *** empty log message *** + + * setup.iss.in: + Summary: Adding gnuplot 5.1 with bin and etc for pango fonts + +2015-10-24 Brouard Nicolas <brouard@ined.fr> + + * imach.c: *** empty log message *** + +2015-10-23 Brouard Nicolas <brouard@ined.fr> + + * imach.c: + Summary: 0.98r3 some clarification for graphs on likelihood contributions + +2015-10-01 Brouard Nicolas <brouard@ined.fr> + + * imach.c: Summary: Some new graphs of contribution to likelihood + +2015-09-30 Brouard Nicolas <brouard@ined.fr> + + * Makefile: + Summary: Version read from version.h, itself read with cmake + + * imach.c: Summary: looking at better estimation of the hessian + + Also a better criteria for convergence to the period prevalence And + therefore adding the number of years needed to converge. (The + prevalence in any alive state shold sum to one + + * Makefile: *** empty log message *** + +2015-09-22 Brouard Nicolas <brouard@ined.fr> + + * imach.c: + Summary: Adding some overall graph on contribution to likelihood. Might change + +2015-09-15 Brouard Nicolas <brouard@ined.fr> + + * Makefile: *** empty log message *** + + * imach.c: Summary: 0.98r0 + + - Some new graphs like survival functions + - Some bugs fixed like model=1+age+V2. + + * ChangeLog, Makefile: Summary: 0.98r0 + + * CMakeLists.txt: Summary: Some tests for setup.iss + +2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr> + + * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc + +2015-08-18 Nicolas J Brouard <nbrouard@tugault.local> + + * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line. + +2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr> + + * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih) + +2014-12-16 Nicolas J Brouard <nbrouard@tugault.local> + + * imach.c (Module): Merging 1.61 to 1.162 + +2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr> + + * prevlim.h (Module): + +2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local> + + * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... + (Module): Version 0.98nR Running ok, but output format still only works for three covariates. + +2010-04-29 brouard <brouard@ined.fr> + + * imach.c (Module): Checking covariates for more complex models + than V1+V2. A lot of change to be done. Unstable. + +2010-04-26 brouard <brouard@ined.fr> + + * imach.c (Module): merging some libgsl code. Fixing computation + of likelione (using inter/intrapolation if mle = 0) in order to + get same likelihood as if mle=1. + Some cleaning of code and comments added. + +2009-10-29 brouard <brouard@ined.fr> + + * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code. + +2006-06-30 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): Clarifications on computing e.j + +2006-04-28 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): Yes the sum of survivors was wrong since + imach-114 because nhstepm was no more computed in the age + loop. Now we define nhstepma in the age loop. + (Module): In order to speed up (in case of numerous covariates) we + compute health expectancies (without variances) in a first step + and then all the health expectancies with variances or standard + deviation (needs data from the Hessian matrices) which slows the + computation. + In the future we should be able to stop the program is only health + expectancies and graph are needed without standard deviations. + +2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr> + + * imach.iss (Module): + + * imach.c (Module): bugs in evsi + population file added in htm output file + +2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr> + + * imach.c (Module): + +2006-03-20 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): <title> changed, corresponds to .htm file + name. <head> headers where missing. + + * Makefile (Module): 0.98g + + * imach.c (Module): Weights can have a decimal point as for + English (a comma might work with a correct LC_NUMERIC environment, + otherwise the weight is truncated). + Modification of warning when the covariates values are not 0 or + 1. + Version 0.98g + +2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr> + + * imach.c (Module): Comments concerning covariates added + + * noreg-setup.iss (Module): Version 0.98f + + * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup + + * imach.c (Module): refinements in the computation of lli if + status=-2 in order to have more reliable computation if stepm is + not 1 month. Version 0.98f + +2006-03-15 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): Bug if status = -2, the loglikelihood was + computed as likelihood omitting the logarithm. Version O.98e + +2006-03-14 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): varevsij Comments added explaining the second + table of variances if popbased=1 . + (Module): Covariances of eij, ekl added, graphs fixed, new html link. + (Module): Function pstamp added + (Module): Version 0.98d + +2006-03-06 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): Variance-covariance wrong links and + varian-covariance of ej. is needed (Saito). + +2006-02-27 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): One freematrix added in mlikeli! + +2006-02-26 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): Some improvements in processing parameter + filename with strsep. + +2006-02-24 Brouard Nicolas <brouard@localhost> + + * imach.c (Module): Memory leaks checks with valgrind and: + datafile was not closed, some imatrix were not freed and on matrix + allocation too. + +2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr> + + * strsep.c (Module): Inclusion because not in mingw32!!! + + * setup.iss.in (Module): IMACHSETUPVERSION added + + * noreg-setup.iss (Module): added to cvs tree + + * Makefile (Module): IMACHSETUPVERSION added + +2006-01-30 BROUARD Nicolas <brouard@localhost> + + * Makefile (Module, Module): Latest Makefile + + * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe + +2006-01-27 BROUARD Nicolas <brouard@localhost> + + * noreg-setup.iss (Module): ADDED + +2006-01-24 BROUARD Nicolas <brouard@localhost> + + * imach.c (Module): Comments (lines starting with a #) are allowed in data. + +2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr> + + * Makefile (Module): Added Imach98.pmsp and howto crete a dmg + + * createdmg.sh (Module): Creates a dmg disk for MaC OS/X + +2005-09-30 <lievre@PC_00595> + + * imach.c (Module): sump fixed, loop imx fixed, and simplifications. + (Module): If the status is missing at the last wave but we know + that the person is alive, then we can code his/her status as -2 + (instead of missing=-1 in earlier versions) and his/her + contributions to the likelihood is 1 - Prob of dying from last + health status (= 1-p13= p11+p12 in the easiest case of somebody in + the healthy state at last known wave). Version is 0.98 + +2004-05-20 Brouard Nicolas <brouard@localhost> + + * imach.c (Repository): + Agnes added a direct estimation of mortality (without the need of + computing period prevalence and differential mortality). Thus here + is version 0.97a which has been distributed to some people at + REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of + mortality using covariates is not done today. Estimating direct + mortality is a very different process because it doesn't need + interpolation because it is easy to get the lx from the force of + the mortality mux in the simplest case as for a Gompertz (log mux + = a + b*x . But we have been able to incorporate the new code + within former imach program (0.96d) without deteriorating too much + the understanding of the program. + +2003-06-25 <brouard@BROUARD> + + * imach.c (Module): On windows (cygwin) function asctime_r doesn't + exist so I changed back to asctime which exists. + (Module): Version 0.96b + +2003-06-24 <brouard@BROUARD> + + * imach.c (Module): Some bugs corrected for windows. Also, when + mle=-1 a template is output in file "or"mypar.txt with the design + of the covariance matrix to be input. + +2003-06-25 Brouard Nicolas <brouard@homebrou> + + * imach.c (Repository): Duplicated warning errors corrected. + (Repository): Elapsed time after each iteration is now output. It + helps to forecast when convergence will be reached. Elapsed time + is stamped in powell. We created a new html file for the graphs + concerning matrix of covariance. It has extension -cov.htm. + +2003-06-23 Brouard Nicolas <brouard@homebrou> + + * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things. + +2003-06-18 Brouard Nicolas <brouard@homebrou> + + * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96 + +2003-06-17 Brouard Nicolas <brouard@homebrou> + + + * imach.c (Repository): Check when date of death was earlier that + current date of interview. It may happen when the death was just + prior to the death. In this case, dh was negative and likelihood + was wrong (infinity). We still send an "Error" but patch by + assuming that the date of death was just one stepm after the + interview. + (Repository): Because some people have very long ID (first column) + we changed int to long in num[] and we added a new lvector for + memory allocation. But we also truncated to 8 characters (left + truncation) + + (Repository): No more line truncation errors. + +2003-06-14 Brouard Nicolas <brouard@homebrou> + + * imach.c (Repository): Add of a routine likelione (likelihood + only once) which prints on a text file + (ilk) the contributions to the likelihood for each + individual/wave. + +2003-06-13 Brouard Nicolas <brouard@homebrou> + * imach.c (Repository): Replace "freqsummary" at a correct + place. It differs from routine "prevalence" which may be called + many times. Probs is memory consuming and must be used with + parcimony. + +2003-06-17 <brouard@BROUARD> + + * timeval.h (Module): Added included file to make use of + gettimeofday working on win32 with cygwin. + +2003-05-16 Brouard Nicolas <brouard@brouard> + * imach.c (Module): Insert of a warning if the delay between two + waves is negative. + + * imach.c (Module): + +2003-05-03 <brouard@BROUARD> + + * imach.c: Some cleaning + +2003-03-28 <brouard@BROUARD> + * imach.c (Module): In version up to 0.92 likelihood was computed + as if date of death was unknown. Death was treated as any other + health state: the date of the interview describes the actual state + and not the date of a change in health state. The former idea was + to consider that at each interview the state was recorded + (healthy, disable or death) and IMaCh was corrected; but when we + introduced the exact date of death then we should have modified + the contribution of an exact death to the likelihood. This new + contribution is smaller and very dependent of the step unit + stepm. It is no more the probability to die between last interview + and month of death but the probability to survive from last + interview up to one month before death multiplied by the + probability to die within a month. Thanks to Chris + Jackson for correcting this bug. Former versions increased + mortality artificially. The bad side is that we add another loop + which slows down the processing. The difference can be up to 10% + lower mortality. + +2002-05-30 <brouard@BROUARD> + + * imach.c (Module): Add correlation matrix of one-step + probabilities and covariance matrix +