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Annotation of imach/src/ChangeLog, revision 1.17

1.16      lievre      1: 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                      2: 
1.17    ! lievre      3:        * setup.iss.in (Module): IMACHSETUPVERSION added
        !             4: 
        !             5:        * noreg-setup.iss (Module): added to cvs tree
        !             6: 
1.16      lievre      7:        * Makefile (Module): IMACHSETUPVERSION added
                      8: 
1.15      brouard     9: 2006-01-30  BROUARD Nicolas  <brouard@localhost>
                     10: 
                     11:        * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
                     12: 
                     13: 2006-01-27  BROUARD Nicolas  <brouard@localhost>
                     14: 
                     15:        * noreg-setup.iss (Module): ADDED
                     16: 
                     17: 2006-01-24  BROUARD Nicolas  <brouard@localhost>
                     18: 
                     19:        * imach.c (Module): Comments (lines starting with a #) are allowed in data.
                     20: 
1.14      brouard    21: 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
                     22: 
                     23:        * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
                     24: 
                     25:        * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
                     26: 
1.12      lievre     27: 2005-09-30    <lievre@PC_00595>
                     28: 
                     29:        * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13      lievre     30:        (Module): If the status is missing at the last wave but we know
                     31:        that the person is alive, then we can code his/her status as -2
                     32:        (instead of missing=-1 in earlier versions) and his/her
                     33:        contributions to the likelihood is 1 - Prob of dying from last
                     34:        health status (= 1-p13= p11+p12 in the easiest case of somebody in
                     35:        the healthy state at last known wave). Version is 0.98 
1.12      lievre     36: 
1.11      brouard    37: 2004-05-20  Brouard Nicolas  <brouard@localhost>
                     38: 
                     39:        * imach.c (Repository): 
                     40:        Agnes added a direct estimation of mortality (without the need of
                     41:        computing period prevalence and differential mortality). Thus here
                     42:        is version 0.97a which has been distributed to some people at
                     43:        REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
                     44:        mortality using covariates is not done today. Estimating direct
                     45:        mortality is a very different process because it doesn't need
                     46:        interpolation because it is easy to get the lx from the force of
                     47:        the mortality mux in the simplest case as for a Gompertz (log mux
                     48:        = a + b*x . But we have been able to incorporate the new code
                     49:        within former imach program (0.96d) without deteriorating too much
                     50:        the understanding of the program. 
                     51: 
1.10      brouard    52: 2003-06-25    <brouard@BROUARD>
                     53: 
                     54:        * imach.c (Module): On windows (cygwin) function asctime_r doesn't
                     55:        exist so I changed back to asctime which exists.
                     56:        (Module): Version 0.96b
                     57: 
                     58: 2003-06-24    <brouard@BROUARD>
                     59: 
                     60:        * imach.c (Module): Some bugs corrected for windows. Also, when
                     61:        mle=-1 a template is output in file "or"mypar.txt with the design
                     62:        of the covariance matrix to be input.
                     63: 
1.9       brouard    64: 2003-06-25  Brouard Nicolas  <brouard@homebrou>
                     65: 
                     66:        * imach.c (Repository): Duplicated warning errors corrected.
                     67:        (Repository): Elapsed time after each iteration is now output. It
                     68:        helps to forecast when convergence will be reached. Elapsed time
                     69:        is stamped in powell.  We created a new html file for the graphs
                     70:        concerning matrix of covariance. It has extension -cov.htm.
                     71: 
1.8       brouard    72: 2003-06-23  Brouard Nicolas  <brouard@homebrou>
                     73: 
                     74:        * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
                     75: 
                     76: 2003-06-18  Brouard Nicolas  <brouard@homebrou>
                     77: 
                     78:        * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
                     79: 
1.7       brouard    80: 2003-06-17  Brouard Nicolas  <brouard@homebrou>
                     81: 
                     82: 
                     83:        * imach.c (Repository): Check when date of death was earlier that
                     84:        current date of interview. It may happen when the death was just
                     85:        prior to the death. In this case, dh was negative and likelihood
                     86:        was wrong (infinity). We still send an "Error" but patch by
                     87:        assuming that the date of death was just one stepm after the
                     88:        interview.
                     89:        (Repository): Because some people have very long ID (first column)
                     90:        we changed int to long in num[] and we added a new lvector for
                     91:        memory allocation. But we also truncated to 8 characters (left
                     92:        truncation)
                     93: 
                     94:        (Repository): No more line truncation errors.
                     95: 
                     96: 2003-06-14  Brouard Nicolas  <brouard@homebrou>
                     97: 
                     98:        * imach.c (Repository): Add of a routine likelione (likelihood
                     99:        only once) which prints on a text file
                    100:        (ilk) the contributions to the likelihood for each
                    101:        individual/wave.
                    102: 
                    103: 2003-06-13  Brouard Nicolas  <brouard@homebrou>
                    104:        * imach.c (Repository): Replace "freqsummary" at a correct
                    105:        place. It differs from routine "prevalence" which may be called
                    106:        many times. Probs is memory consuming and must be used with
                    107:        parcimony.
                    108: 
                    109: 2003-06-17    <brouard@BROUARD>
                    110: 
                    111:        * timeval.h (Module): Added included file to make use of
                    112:        gettimeofday working on win32 with cygwin.
                    113: 
                    114: 2003-05-16  Brouard Nicolas  <brouard@brouard>
                    115:        * imach.c (Module): Insert of a warning if the delay between two
                    116:        waves is negative.
                    117: 
                    118:        * imach.c (Module): 
                    119: 
                    120: 2003-05-03    <brouard@BROUARD>
                    121: 
                    122:        * imach.c: Some cleaning
                    123: 
                    124: 2003-03-28    <brouard@BROUARD>
                    125:        * imach.c (Module): In version up to 0.92 likelihood was computed
                    126:        as if date of death was unknown. Death was treated as any other
                    127:        health state: the date of the interview describes the actual state
                    128:        and not the date of a change in health state. The former idea was
                    129:        to consider that at each interview the state was recorded
                    130:        (healthy, disable or death) and IMaCh was corrected; but when we
                    131:        introduced the exact date of death then we should have modified
                    132:        the contribution of an exact death to the likelihood. This new
                    133:        contribution is smaller and very dependent of the step unit
                    134:        stepm. It is no more the probability to die between last interview
                    135:        and month of death but the probability to survive from last
                    136:        interview up to one month before death multiplied by the
                    137:        probability to die within a month. Thanks to Chris
                    138:        Jackson for correcting this bug.  Former versions increased
                    139:        mortality artificially. The bad side is that we add another loop
                    140: 
                    141: 
                    142:        which slows down the processing. The difference can be up to 10%
                    143: 
                    144: 
                    145:        lower mortality.
                    146: 
                    147: 
                    148: 
                    149: 
                    150: 
                    151: 2002-05-30    <brouard@BROUARD>
                    152: 
                    153: 
                    154: 
                    155: 
                    156: 
                    157:        * 
                    158: 
                    159: 
                    160: 
                    161: 
                    162: 
                    163:        * imach.c (Module): Add correlation matrix of one-step
                    164: 
                    165: 
                    166:        probabilities and covariance matrix
                    167: 
                    168: 
                    169: 
                    170: 
                    171: