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Annotation of imach/src/ChangeLog, revision 1.18

1.16      lievre      1: 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                      2: 
1.18    ! lievre      3:        * strsep.c (Module): Inclusion because not in mingw32!!!
        !             4: 
1.17      lievre      5:        * setup.iss.in (Module): IMACHSETUPVERSION added
                      6: 
                      7:        * noreg-setup.iss (Module): added to cvs tree
                      8: 
1.16      lievre      9:        * Makefile (Module): IMACHSETUPVERSION added
                     10: 
1.15      brouard    11: 2006-01-30  BROUARD Nicolas  <brouard@localhost>
                     12: 
                     13:        * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
                     14: 
                     15: 2006-01-27  BROUARD Nicolas  <brouard@localhost>
                     16: 
                     17:        * noreg-setup.iss (Module): ADDED
                     18: 
                     19: 2006-01-24  BROUARD Nicolas  <brouard@localhost>
                     20: 
                     21:        * imach.c (Module): Comments (lines starting with a #) are allowed in data.
                     22: 
1.14      brouard    23: 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
                     24: 
                     25:        * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
                     26: 
                     27:        * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
                     28: 
1.12      lievre     29: 2005-09-30    <lievre@PC_00595>
                     30: 
                     31:        * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13      lievre     32:        (Module): If the status is missing at the last wave but we know
                     33:        that the person is alive, then we can code his/her status as -2
                     34:        (instead of missing=-1 in earlier versions) and his/her
                     35:        contributions to the likelihood is 1 - Prob of dying from last
                     36:        health status (= 1-p13= p11+p12 in the easiest case of somebody in
                     37:        the healthy state at last known wave). Version is 0.98 
1.12      lievre     38: 
1.11      brouard    39: 2004-05-20  Brouard Nicolas  <brouard@localhost>
                     40: 
                     41:        * imach.c (Repository): 
                     42:        Agnes added a direct estimation of mortality (without the need of
                     43:        computing period prevalence and differential mortality). Thus here
                     44:        is version 0.97a which has been distributed to some people at
                     45:        REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
                     46:        mortality using covariates is not done today. Estimating direct
                     47:        mortality is a very different process because it doesn't need
                     48:        interpolation because it is easy to get the lx from the force of
                     49:        the mortality mux in the simplest case as for a Gompertz (log mux
                     50:        = a + b*x . But we have been able to incorporate the new code
                     51:        within former imach program (0.96d) without deteriorating too much
                     52:        the understanding of the program. 
                     53: 
1.10      brouard    54: 2003-06-25    <brouard@BROUARD>
                     55: 
                     56:        * imach.c (Module): On windows (cygwin) function asctime_r doesn't
                     57:        exist so I changed back to asctime which exists.
                     58:        (Module): Version 0.96b
                     59: 
                     60: 2003-06-24    <brouard@BROUARD>
                     61: 
                     62:        * imach.c (Module): Some bugs corrected for windows. Also, when
                     63:        mle=-1 a template is output in file "or"mypar.txt with the design
                     64:        of the covariance matrix to be input.
                     65: 
1.9       brouard    66: 2003-06-25  Brouard Nicolas  <brouard@homebrou>
                     67: 
                     68:        * imach.c (Repository): Duplicated warning errors corrected.
                     69:        (Repository): Elapsed time after each iteration is now output. It
                     70:        helps to forecast when convergence will be reached. Elapsed time
                     71:        is stamped in powell.  We created a new html file for the graphs
                     72:        concerning matrix of covariance. It has extension -cov.htm.
                     73: 
1.8       brouard    74: 2003-06-23  Brouard Nicolas  <brouard@homebrou>
                     75: 
                     76:        * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
                     77: 
                     78: 2003-06-18  Brouard Nicolas  <brouard@homebrou>
                     79: 
                     80:        * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
                     81: 
1.7       brouard    82: 2003-06-17  Brouard Nicolas  <brouard@homebrou>
                     83: 
                     84: 
                     85:        * imach.c (Repository): Check when date of death was earlier that
                     86:        current date of interview. It may happen when the death was just
                     87:        prior to the death. In this case, dh was negative and likelihood
                     88:        was wrong (infinity). We still send an "Error" but patch by
                     89:        assuming that the date of death was just one stepm after the
                     90:        interview.
                     91:        (Repository): Because some people have very long ID (first column)
                     92:        we changed int to long in num[] and we added a new lvector for
                     93:        memory allocation. But we also truncated to 8 characters (left
                     94:        truncation)
                     95: 
                     96:        (Repository): No more line truncation errors.
                     97: 
                     98: 2003-06-14  Brouard Nicolas  <brouard@homebrou>
                     99: 
                    100:        * imach.c (Repository): Add of a routine likelione (likelihood
                    101:        only once) which prints on a text file
                    102:        (ilk) the contributions to the likelihood for each
                    103:        individual/wave.
                    104: 
                    105: 2003-06-13  Brouard Nicolas  <brouard@homebrou>
                    106:        * imach.c (Repository): Replace "freqsummary" at a correct
                    107:        place. It differs from routine "prevalence" which may be called
                    108:        many times. Probs is memory consuming and must be used with
                    109:        parcimony.
                    110: 
                    111: 2003-06-17    <brouard@BROUARD>
                    112: 
                    113:        * timeval.h (Module): Added included file to make use of
                    114:        gettimeofday working on win32 with cygwin.
                    115: 
                    116: 2003-05-16  Brouard Nicolas  <brouard@brouard>
                    117:        * imach.c (Module): Insert of a warning if the delay between two
                    118:        waves is negative.
                    119: 
                    120:        * imach.c (Module): 
                    121: 
                    122: 2003-05-03    <brouard@BROUARD>
                    123: 
                    124:        * imach.c: Some cleaning
                    125: 
                    126: 2003-03-28    <brouard@BROUARD>
                    127:        * imach.c (Module): In version up to 0.92 likelihood was computed
                    128:        as if date of death was unknown. Death was treated as any other
                    129:        health state: the date of the interview describes the actual state
                    130:        and not the date of a change in health state. The former idea was
                    131:        to consider that at each interview the state was recorded
                    132:        (healthy, disable or death) and IMaCh was corrected; but when we
                    133:        introduced the exact date of death then we should have modified
                    134:        the contribution of an exact death to the likelihood. This new
                    135:        contribution is smaller and very dependent of the step unit
                    136:        stepm. It is no more the probability to die between last interview
                    137:        and month of death but the probability to survive from last
                    138:        interview up to one month before death multiplied by the
                    139:        probability to die within a month. Thanks to Chris
                    140:        Jackson for correcting this bug.  Former versions increased
                    141:        mortality artificially. The bad side is that we add another loop
                    142: 
                    143: 
                    144:        which slows down the processing. The difference can be up to 10%
                    145: 
                    146: 
                    147:        lower mortality.
                    148: 
                    149: 
                    150: 
                    151: 
                    152: 
                    153: 2002-05-30    <brouard@BROUARD>
                    154: 
                    155: 
                    156: 
                    157: 
                    158: 
                    159:        * 
                    160: 
                    161: 
                    162: 
                    163: 
                    164: 
                    165:        * imach.c (Module): Add correlation matrix of one-step
                    166: 
                    167: 
                    168:        probabilities and covariance matrix
                    169: 
                    170: 
                    171: 
                    172: 
                    173: