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Annotation of imach/src/ChangeLog, revision 1.19

1.19    ! brouard     1: 2006-02-27  Brouard Nicolas  <brouard@localhost>
        !             2: 
        !             3:        * imach.c (Module): One freematrix added in mlikeli!
        !             4: 
        !             5: 2006-02-26  Brouard Nicolas  <brouard@localhost>
        !             6: 
        !             7:        * imach.c (Module): Some improvements in processing parameter
        !             8:        filename with strsep.
        !             9: 
        !            10: 2006-02-24  Brouard Nicolas  <brouard@localhost>
        !            11: 
        !            12:        * imach.c (Module): Memory leaks checks with valgrind and:
        !            13:        datafile was not closed, some imatrix were not freed and on matrix
        !            14:        allocation too.
        !            15: 
1.16      lievre     16: 2006-02-09  LIEVRE Agnes  <lievre@PC_00697.ined.fr>
                     17: 
1.18      lievre     18:        * strsep.c (Module): Inclusion because not in mingw32!!!
                     19: 
1.17      lievre     20:        * setup.iss.in (Module): IMACHSETUPVERSION added
                     21: 
                     22:        * noreg-setup.iss (Module): added to cvs tree
                     23: 
1.16      lievre     24:        * Makefile (Module): IMACHSETUPVERSION added
                     25: 
1.15      brouard    26: 2006-01-30  BROUARD Nicolas  <brouard@localhost>
                     27: 
                     28:        * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
                     29: 
                     30: 2006-01-27  BROUARD Nicolas  <brouard@localhost>
                     31: 
                     32:        * noreg-setup.iss (Module): ADDED
                     33: 
                     34: 2006-01-24  BROUARD Nicolas  <brouard@localhost>
                     35: 
                     36:        * imach.c (Module): Comments (lines starting with a #) are allowed in data.
                     37: 
1.14      brouard    38: 2005-10-25  Nicolas Brouard  <brouard@dhcp171.recherche.ined.fr>
                     39: 
                     40:        * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
                     41: 
                     42:        * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
                     43: 
1.12      lievre     44: 2005-09-30    <lievre@PC_00595>
                     45: 
                     46:        * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13      lievre     47:        (Module): If the status is missing at the last wave but we know
                     48:        that the person is alive, then we can code his/her status as -2
                     49:        (instead of missing=-1 in earlier versions) and his/her
                     50:        contributions to the likelihood is 1 - Prob of dying from last
                     51:        health status (= 1-p13= p11+p12 in the easiest case of somebody in
                     52:        the healthy state at last known wave). Version is 0.98 
1.12      lievre     53: 
1.11      brouard    54: 2004-05-20  Brouard Nicolas  <brouard@localhost>
                     55: 
                     56:        * imach.c (Repository): 
                     57:        Agnes added a direct estimation of mortality (without the need of
                     58:        computing period prevalence and differential mortality). Thus here
                     59:        is version 0.97a which has been distributed to some people at
                     60:        REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
                     61:        mortality using covariates is not done today. Estimating direct
                     62:        mortality is a very different process because it doesn't need
                     63:        interpolation because it is easy to get the lx from the force of
                     64:        the mortality mux in the simplest case as for a Gompertz (log mux
                     65:        = a + b*x . But we have been able to incorporate the new code
                     66:        within former imach program (0.96d) without deteriorating too much
                     67:        the understanding of the program. 
                     68: 
1.10      brouard    69: 2003-06-25    <brouard@BROUARD>
                     70: 
                     71:        * imach.c (Module): On windows (cygwin) function asctime_r doesn't
                     72:        exist so I changed back to asctime which exists.
                     73:        (Module): Version 0.96b
                     74: 
                     75: 2003-06-24    <brouard@BROUARD>
                     76: 
                     77:        * imach.c (Module): Some bugs corrected for windows. Also, when
                     78:        mle=-1 a template is output in file "or"mypar.txt with the design
                     79:        of the covariance matrix to be input.
                     80: 
1.9       brouard    81: 2003-06-25  Brouard Nicolas  <brouard@homebrou>
                     82: 
                     83:        * imach.c (Repository): Duplicated warning errors corrected.
                     84:        (Repository): Elapsed time after each iteration is now output. It
                     85:        helps to forecast when convergence will be reached. Elapsed time
                     86:        is stamped in powell.  We created a new html file for the graphs
                     87:        concerning matrix of covariance. It has extension -cov.htm.
                     88: 
1.8       brouard    89: 2003-06-23  Brouard Nicolas  <brouard@homebrou>
                     90: 
                     91:        * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
                     92: 
                     93: 2003-06-18  Brouard Nicolas  <brouard@homebrou>
                     94: 
                     95:        * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
                     96: 
1.7       brouard    97: 2003-06-17  Brouard Nicolas  <brouard@homebrou>
                     98: 
                     99: 
                    100:        * imach.c (Repository): Check when date of death was earlier that
                    101:        current date of interview. It may happen when the death was just
                    102:        prior to the death. In this case, dh was negative and likelihood
                    103:        was wrong (infinity). We still send an "Error" but patch by
                    104:        assuming that the date of death was just one stepm after the
                    105:        interview.
                    106:        (Repository): Because some people have very long ID (first column)
                    107:        we changed int to long in num[] and we added a new lvector for
                    108:        memory allocation. But we also truncated to 8 characters (left
                    109:        truncation)
                    110: 
                    111:        (Repository): No more line truncation errors.
                    112: 
                    113: 2003-06-14  Brouard Nicolas  <brouard@homebrou>
                    114: 
                    115:        * imach.c (Repository): Add of a routine likelione (likelihood
                    116:        only once) which prints on a text file
                    117:        (ilk) the contributions to the likelihood for each
                    118:        individual/wave.
                    119: 
                    120: 2003-06-13  Brouard Nicolas  <brouard@homebrou>
                    121:        * imach.c (Repository): Replace "freqsummary" at a correct
                    122:        place. It differs from routine "prevalence" which may be called
                    123:        many times. Probs is memory consuming and must be used with
                    124:        parcimony.
                    125: 
                    126: 2003-06-17    <brouard@BROUARD>
                    127: 
                    128:        * timeval.h (Module): Added included file to make use of
                    129:        gettimeofday working on win32 with cygwin.
                    130: 
                    131: 2003-05-16  Brouard Nicolas  <brouard@brouard>
                    132:        * imach.c (Module): Insert of a warning if the delay between two
                    133:        waves is negative.
                    134: 
                    135:        * imach.c (Module): 
                    136: 
                    137: 2003-05-03    <brouard@BROUARD>
                    138: 
                    139:        * imach.c: Some cleaning
                    140: 
                    141: 2003-03-28    <brouard@BROUARD>
                    142:        * imach.c (Module): In version up to 0.92 likelihood was computed
                    143:        as if date of death was unknown. Death was treated as any other
                    144:        health state: the date of the interview describes the actual state
                    145:        and not the date of a change in health state. The former idea was
                    146:        to consider that at each interview the state was recorded
                    147:        (healthy, disable or death) and IMaCh was corrected; but when we
                    148:        introduced the exact date of death then we should have modified
                    149:        the contribution of an exact death to the likelihood. This new
                    150:        contribution is smaller and very dependent of the step unit
                    151:        stepm. It is no more the probability to die between last interview
                    152:        and month of death but the probability to survive from last
                    153:        interview up to one month before death multiplied by the
                    154:        probability to die within a month. Thanks to Chris
                    155:        Jackson for correcting this bug.  Former versions increased
                    156:        mortality artificially. The bad side is that we add another loop
                    157: 
                    158: 
                    159:        which slows down the processing. The difference can be up to 10%
                    160: 
                    161: 
                    162:        lower mortality.
                    163: 
                    164: 
                    165: 
                    166: 
                    167: 
                    168: 2002-05-30    <brouard@BROUARD>
                    169: 
                    170: 
                    171: 
                    172: 
                    173: 
                    174:        * 
                    175: 
                    176: 
                    177: 
                    178: 
                    179: 
                    180:        * imach.c (Module): Add correlation matrix of one-step
                    181: 
                    182: 
                    183:        probabilities and covariance matrix
                    184: 
                    185: 
                    186: 
                    187: 
                    188: