Annotation of imach/src/ChangeLog, revision 1.23
1.22 brouard 1: 2006-03-15 Brouard Nicolas <brouard@localhost>
2:
3: * imach.c (Module): Bug if status = -2, the loglikelihood was
4: computed as likelihood omitting the logarithm. Version O.98e
5:
1.21 brouard 6: 2006-03-14 Brouard Nicolas <brouard@localhost>
7:
8: * imach.c (Module): varevsij Comments added explaining the second
9: table of variances if popbased=1 .
10: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
11: (Module): Function pstamp added
12: (Module): Version 0.98d
13:
1.20 brouard 14: 2006-03-06 Brouard Nicolas <brouard@localhost>
15:
16: * imach.c (Module): Variance-covariance wrong links and
17: varian-covariance of ej. is needed (Saito).
18:
1.19 brouard 19: 2006-02-27 Brouard Nicolas <brouard@localhost>
20:
21: * imach.c (Module): One freematrix added in mlikeli!
22:
23: 2006-02-26 Brouard Nicolas <brouard@localhost>
24:
25: * imach.c (Module): Some improvements in processing parameter
26: filename with strsep.
27:
28: 2006-02-24 Brouard Nicolas <brouard@localhost>
29:
30: * imach.c (Module): Memory leaks checks with valgrind and:
31: datafile was not closed, some imatrix were not freed and on matrix
32: allocation too.
33:
1.16 lievre 34: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
35:
1.18 lievre 36: * strsep.c (Module): Inclusion because not in mingw32!!!
37:
1.17 lievre 38: * setup.iss.in (Module): IMACHSETUPVERSION added
39:
40: * noreg-setup.iss (Module): added to cvs tree
41:
1.16 lievre 42: * Makefile (Module): IMACHSETUPVERSION added
43:
1.15 brouard 44: 2006-01-30 BROUARD Nicolas <brouard@localhost>
45:
1.23 ! brouard 46: * Makefile (Module, Module): Latest Makefile
! 47:
1.15 brouard 48: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
49:
50: 2006-01-27 BROUARD Nicolas <brouard@localhost>
51:
52: * noreg-setup.iss (Module): ADDED
53:
54: 2006-01-24 BROUARD Nicolas <brouard@localhost>
55:
56: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
57:
1.14 brouard 58: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
59:
60: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
61:
62: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
63:
1.12 lievre 64: 2005-09-30 <lievre@PC_00595>
65:
66: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 67: (Module): If the status is missing at the last wave but we know
68: that the person is alive, then we can code his/her status as -2
69: (instead of missing=-1 in earlier versions) and his/her
70: contributions to the likelihood is 1 - Prob of dying from last
71: health status (= 1-p13= p11+p12 in the easiest case of somebody in
72: the healthy state at last known wave). Version is 0.98
1.12 lievre 73:
1.11 brouard 74: 2004-05-20 Brouard Nicolas <brouard@localhost>
75:
76: * imach.c (Repository):
77: Agnes added a direct estimation of mortality (without the need of
78: computing period prevalence and differential mortality). Thus here
79: is version 0.97a which has been distributed to some people at
80: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
81: mortality using covariates is not done today. Estimating direct
82: mortality is a very different process because it doesn't need
83: interpolation because it is easy to get the lx from the force of
84: the mortality mux in the simplest case as for a Gompertz (log mux
85: = a + b*x . But we have been able to incorporate the new code
86: within former imach program (0.96d) without deteriorating too much
87: the understanding of the program.
88:
1.10 brouard 89: 2003-06-25 <brouard@BROUARD>
90:
91: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
92: exist so I changed back to asctime which exists.
93: (Module): Version 0.96b
94:
95: 2003-06-24 <brouard@BROUARD>
96:
97: * imach.c (Module): Some bugs corrected for windows. Also, when
98: mle=-1 a template is output in file "or"mypar.txt with the design
99: of the covariance matrix to be input.
100:
1.9 brouard 101: 2003-06-25 Brouard Nicolas <brouard@homebrou>
102:
103: * imach.c (Repository): Duplicated warning errors corrected.
104: (Repository): Elapsed time after each iteration is now output. It
105: helps to forecast when convergence will be reached. Elapsed time
106: is stamped in powell. We created a new html file for the graphs
107: concerning matrix of covariance. It has extension -cov.htm.
108:
1.8 brouard 109: 2003-06-23 Brouard Nicolas <brouard@homebrou>
110:
111: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
112:
113: 2003-06-18 Brouard Nicolas <brouard@homebrou>
114:
115: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
116:
1.7 brouard 117: 2003-06-17 Brouard Nicolas <brouard@homebrou>
118:
119:
120: * imach.c (Repository): Check when date of death was earlier that
121: current date of interview. It may happen when the death was just
122: prior to the death. In this case, dh was negative and likelihood
123: was wrong (infinity). We still send an "Error" but patch by
124: assuming that the date of death was just one stepm after the
125: interview.
126: (Repository): Because some people have very long ID (first column)
127: we changed int to long in num[] and we added a new lvector for
128: memory allocation. But we also truncated to 8 characters (left
129: truncation)
130:
131: (Repository): No more line truncation errors.
132:
133: 2003-06-14 Brouard Nicolas <brouard@homebrou>
134:
135: * imach.c (Repository): Add of a routine likelione (likelihood
136: only once) which prints on a text file
137: (ilk) the contributions to the likelihood for each
138: individual/wave.
139:
140: 2003-06-13 Brouard Nicolas <brouard@homebrou>
141: * imach.c (Repository): Replace "freqsummary" at a correct
142: place. It differs from routine "prevalence" which may be called
143: many times. Probs is memory consuming and must be used with
144: parcimony.
145:
146: 2003-06-17 <brouard@BROUARD>
147:
148: * timeval.h (Module): Added included file to make use of
149: gettimeofday working on win32 with cygwin.
150:
151: 2003-05-16 Brouard Nicolas <brouard@brouard>
152: * imach.c (Module): Insert of a warning if the delay between two
153: waves is negative.
154:
155: * imach.c (Module):
156:
157: 2003-05-03 <brouard@BROUARD>
158:
159: * imach.c: Some cleaning
160:
161: 2003-03-28 <brouard@BROUARD>
162: * imach.c (Module): In version up to 0.92 likelihood was computed
163: as if date of death was unknown. Death was treated as any other
164: health state: the date of the interview describes the actual state
165: and not the date of a change in health state. The former idea was
166: to consider that at each interview the state was recorded
167: (healthy, disable or death) and IMaCh was corrected; but when we
168: introduced the exact date of death then we should have modified
169: the contribution of an exact death to the likelihood. This new
170: contribution is smaller and very dependent of the step unit
171: stepm. It is no more the probability to die between last interview
172: and month of death but the probability to survive from last
173: interview up to one month before death multiplied by the
174: probability to die within a month. Thanks to Chris
175: Jackson for correcting this bug. Former versions increased
176: mortality artificially. The bad side is that we add another loop
177:
178:
179: which slows down the processing. The difference can be up to 10%
180:
181:
182: lower mortality.
183:
184:
185:
186:
187:
188: 2002-05-30 <brouard@BROUARD>
189:
190:
191:
192:
193:
194: *
195:
196:
197:
198:
199:
200: * imach.c (Module): Add correlation matrix of one-step
201:
202:
203: probabilities and covariance matrix
204:
205:
206:
207:
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