Annotation of imach/src/ChangeLog, revision 1.26
1.24 lievre 1: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
2:
1.26 ! lievre 3: * imach.c (Module): Comments concerning covariates added
! 4:
1.25 lievre 5: * noreg-setup.iss (Module): Version 0.98f
6:
1.24 lievre 7: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
8:
9: * imach.c (Module): refinements in the computation of lli if
10: status=-2 in order to have more reliable computation if stepm is
11: not 1 month. Version 0.98f
12:
1.22 brouard 13: 2006-03-15 Brouard Nicolas <brouard@localhost>
14:
15: * imach.c (Module): Bug if status = -2, the loglikelihood was
16: computed as likelihood omitting the logarithm. Version O.98e
17:
1.21 brouard 18: 2006-03-14 Brouard Nicolas <brouard@localhost>
19:
20: * imach.c (Module): varevsij Comments added explaining the second
21: table of variances if popbased=1 .
22: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
23: (Module): Function pstamp added
24: (Module): Version 0.98d
25:
1.20 brouard 26: 2006-03-06 Brouard Nicolas <brouard@localhost>
27:
28: * imach.c (Module): Variance-covariance wrong links and
29: varian-covariance of ej. is needed (Saito).
30:
1.19 brouard 31: 2006-02-27 Brouard Nicolas <brouard@localhost>
32:
33: * imach.c (Module): One freematrix added in mlikeli!
34:
35: 2006-02-26 Brouard Nicolas <brouard@localhost>
36:
37: * imach.c (Module): Some improvements in processing parameter
38: filename with strsep.
39:
40: 2006-02-24 Brouard Nicolas <brouard@localhost>
41:
42: * imach.c (Module): Memory leaks checks with valgrind and:
43: datafile was not closed, some imatrix were not freed and on matrix
44: allocation too.
45:
1.16 lievre 46: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
47:
1.18 lievre 48: * strsep.c (Module): Inclusion because not in mingw32!!!
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1.17 lievre 50: * setup.iss.in (Module): IMACHSETUPVERSION added
51:
52: * noreg-setup.iss (Module): added to cvs tree
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1.16 lievre 54: * Makefile (Module): IMACHSETUPVERSION added
55:
1.15 brouard 56: 2006-01-30 BROUARD Nicolas <brouard@localhost>
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1.23 brouard 58: * Makefile (Module, Module): Latest Makefile
59:
1.15 brouard 60: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
61:
62: 2006-01-27 BROUARD Nicolas <brouard@localhost>
63:
64: * noreg-setup.iss (Module): ADDED
65:
66: 2006-01-24 BROUARD Nicolas <brouard@localhost>
67:
68: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
69:
1.14 brouard 70: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
71:
72: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
73:
74: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
75:
1.12 lievre 76: 2005-09-30 <lievre@PC_00595>
77:
78: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 79: (Module): If the status is missing at the last wave but we know
80: that the person is alive, then we can code his/her status as -2
81: (instead of missing=-1 in earlier versions) and his/her
82: contributions to the likelihood is 1 - Prob of dying from last
83: health status (= 1-p13= p11+p12 in the easiest case of somebody in
84: the healthy state at last known wave). Version is 0.98
1.12 lievre 85:
1.11 brouard 86: 2004-05-20 Brouard Nicolas <brouard@localhost>
87:
88: * imach.c (Repository):
89: Agnes added a direct estimation of mortality (without the need of
90: computing period prevalence and differential mortality). Thus here
91: is version 0.97a which has been distributed to some people at
92: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
93: mortality using covariates is not done today. Estimating direct
94: mortality is a very different process because it doesn't need
95: interpolation because it is easy to get the lx from the force of
96: the mortality mux in the simplest case as for a Gompertz (log mux
97: = a + b*x . But we have been able to incorporate the new code
98: within former imach program (0.96d) without deteriorating too much
99: the understanding of the program.
100:
1.10 brouard 101: 2003-06-25 <brouard@BROUARD>
102:
103: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
104: exist so I changed back to asctime which exists.
105: (Module): Version 0.96b
106:
107: 2003-06-24 <brouard@BROUARD>
108:
109: * imach.c (Module): Some bugs corrected for windows. Also, when
110: mle=-1 a template is output in file "or"mypar.txt with the design
111: of the covariance matrix to be input.
112:
1.9 brouard 113: 2003-06-25 Brouard Nicolas <brouard@homebrou>
114:
115: * imach.c (Repository): Duplicated warning errors corrected.
116: (Repository): Elapsed time after each iteration is now output. It
117: helps to forecast when convergence will be reached. Elapsed time
118: is stamped in powell. We created a new html file for the graphs
119: concerning matrix of covariance. It has extension -cov.htm.
120:
1.8 brouard 121: 2003-06-23 Brouard Nicolas <brouard@homebrou>
122:
123: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
124:
125: 2003-06-18 Brouard Nicolas <brouard@homebrou>
126:
127: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
128:
1.7 brouard 129: 2003-06-17 Brouard Nicolas <brouard@homebrou>
130:
131:
132: * imach.c (Repository): Check when date of death was earlier that
133: current date of interview. It may happen when the death was just
134: prior to the death. In this case, dh was negative and likelihood
135: was wrong (infinity). We still send an "Error" but patch by
136: assuming that the date of death was just one stepm after the
137: interview.
138: (Repository): Because some people have very long ID (first column)
139: we changed int to long in num[] and we added a new lvector for
140: memory allocation. But we also truncated to 8 characters (left
141: truncation)
142:
143: (Repository): No more line truncation errors.
144:
145: 2003-06-14 Brouard Nicolas <brouard@homebrou>
146:
147: * imach.c (Repository): Add of a routine likelione (likelihood
148: only once) which prints on a text file
149: (ilk) the contributions to the likelihood for each
150: individual/wave.
151:
152: 2003-06-13 Brouard Nicolas <brouard@homebrou>
153: * imach.c (Repository): Replace "freqsummary" at a correct
154: place. It differs from routine "prevalence" which may be called
155: many times. Probs is memory consuming and must be used with
156: parcimony.
157:
158: 2003-06-17 <brouard@BROUARD>
159:
160: * timeval.h (Module): Added included file to make use of
161: gettimeofday working on win32 with cygwin.
162:
163: 2003-05-16 Brouard Nicolas <brouard@brouard>
164: * imach.c (Module): Insert of a warning if the delay between two
165: waves is negative.
166:
167: * imach.c (Module):
168:
169: 2003-05-03 <brouard@BROUARD>
170:
171: * imach.c: Some cleaning
172:
173: 2003-03-28 <brouard@BROUARD>
174: * imach.c (Module): In version up to 0.92 likelihood was computed
175: as if date of death was unknown. Death was treated as any other
176: health state: the date of the interview describes the actual state
177: and not the date of a change in health state. The former idea was
178: to consider that at each interview the state was recorded
179: (healthy, disable or death) and IMaCh was corrected; but when we
180: introduced the exact date of death then we should have modified
181: the contribution of an exact death to the likelihood. This new
182: contribution is smaller and very dependent of the step unit
183: stepm. It is no more the probability to die between last interview
184: and month of death but the probability to survive from last
185: interview up to one month before death multiplied by the
186: probability to die within a month. Thanks to Chris
187: Jackson for correcting this bug. Former versions increased
188: mortality artificially. The bad side is that we add another loop
189:
190:
191: which slows down the processing. The difference can be up to 10%
192:
193:
194: lower mortality.
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199:
200: 2002-05-30 <brouard@BROUARD>
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205:
206: *
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208:
209:
210:
211:
212: * imach.c (Module): Add correlation matrix of one-step
213:
214:
215: probabilities and covariance matrix
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