Annotation of imach/src/ChangeLog, revision 1.32
1.32 ! brouard 1: 2009-10-29 brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
! 4:
1.31 brouard 5: 2006-06-30 Brouard Nicolas <brouard@localhost>
6:
7: * imach.c (Module): Clarifications on computing e.j
8:
1.30 brouard 9: 2006-04-28 Brouard Nicolas <brouard@localhost>
10:
11: * imach.c (Module): Yes the sum of survivors was wrong since
12: imach-114 because nhstepm was no more computed in the age
13: loop. Now we define nhstepma in the age loop.
1.31 brouard 14: (Module): In order to speed up (in case of numerous covariates) we
15: compute health expectancies (without variances) in a first step
16: and then all the health expectancies with variances or standard
17: deviation (needs data from the Hessian matrices) which slows the
18: computation.
19: In the future we should be able to stop the program is only health
20: expectancies and graph are needed without standard deviations.
1.30 brouard 21:
1.29 lievre 22: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
23:
24: * imach.iss (Module):
25:
26: * imach.c (Module): bugs in evsi + population file added in htm output file
27:
28: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
29:
30: * imach.c (Module):
31:
1.27 brouard 32: 2006-03-20 Brouard Nicolas <brouard@localhost>
33:
1.28 brouard 34: * imach.c (Module): <title> changed, corresponds to .htm file
35: name. <head> headers where missing.
36:
1.27 brouard 37: * Makefile (Module): 0.98g
38:
39: * imach.c (Module): Weights can have a decimal point as for
40: English (a comma might work with a correct LC_NUMERIC environment,
41: otherwise the weight is truncated).
42: Modification of warning when the covariates values are not 0 or
43: 1.
44: Version 0.98g
45:
1.24 lievre 46: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
47:
1.26 lievre 48: * imach.c (Module): Comments concerning covariates added
49:
1.25 lievre 50: * noreg-setup.iss (Module): Version 0.98f
51:
1.24 lievre 52: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
53:
54: * imach.c (Module): refinements in the computation of lli if
55: status=-2 in order to have more reliable computation if stepm is
56: not 1 month. Version 0.98f
57:
1.22 brouard 58: 2006-03-15 Brouard Nicolas <brouard@localhost>
59:
60: * imach.c (Module): Bug if status = -2, the loglikelihood was
61: computed as likelihood omitting the logarithm. Version O.98e
62:
1.21 brouard 63: 2006-03-14 Brouard Nicolas <brouard@localhost>
64:
65: * imach.c (Module): varevsij Comments added explaining the second
66: table of variances if popbased=1 .
67: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
68: (Module): Function pstamp added
69: (Module): Version 0.98d
70:
1.20 brouard 71: 2006-03-06 Brouard Nicolas <brouard@localhost>
72:
73: * imach.c (Module): Variance-covariance wrong links and
74: varian-covariance of ej. is needed (Saito).
75:
1.19 brouard 76: 2006-02-27 Brouard Nicolas <brouard@localhost>
77:
78: * imach.c (Module): One freematrix added in mlikeli!
79:
80: 2006-02-26 Brouard Nicolas <brouard@localhost>
81:
82: * imach.c (Module): Some improvements in processing parameter
83: filename with strsep.
84:
85: 2006-02-24 Brouard Nicolas <brouard@localhost>
86:
87: * imach.c (Module): Memory leaks checks with valgrind and:
88: datafile was not closed, some imatrix were not freed and on matrix
89: allocation too.
90:
1.16 lievre 91: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
92:
1.18 lievre 93: * strsep.c (Module): Inclusion because not in mingw32!!!
94:
1.17 lievre 95: * setup.iss.in (Module): IMACHSETUPVERSION added
96:
97: * noreg-setup.iss (Module): added to cvs tree
98:
1.16 lievre 99: * Makefile (Module): IMACHSETUPVERSION added
100:
1.15 brouard 101: 2006-01-30 BROUARD Nicolas <brouard@localhost>
102:
1.23 brouard 103: * Makefile (Module, Module): Latest Makefile
104:
1.15 brouard 105: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
106:
107: 2006-01-27 BROUARD Nicolas <brouard@localhost>
108:
109: * noreg-setup.iss (Module): ADDED
110:
111: 2006-01-24 BROUARD Nicolas <brouard@localhost>
112:
113: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
114:
1.14 brouard 115: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
116:
117: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
118:
119: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
120:
1.12 lievre 121: 2005-09-30 <lievre@PC_00595>
122:
123: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 124: (Module): If the status is missing at the last wave but we know
125: that the person is alive, then we can code his/her status as -2
126: (instead of missing=-1 in earlier versions) and his/her
127: contributions to the likelihood is 1 - Prob of dying from last
128: health status (= 1-p13= p11+p12 in the easiest case of somebody in
129: the healthy state at last known wave). Version is 0.98
1.12 lievre 130:
1.11 brouard 131: 2004-05-20 Brouard Nicolas <brouard@localhost>
132:
133: * imach.c (Repository):
134: Agnes added a direct estimation of mortality (without the need of
135: computing period prevalence and differential mortality). Thus here
136: is version 0.97a which has been distributed to some people at
137: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
138: mortality using covariates is not done today. Estimating direct
139: mortality is a very different process because it doesn't need
140: interpolation because it is easy to get the lx from the force of
141: the mortality mux in the simplest case as for a Gompertz (log mux
142: = a + b*x . But we have been able to incorporate the new code
143: within former imach program (0.96d) without deteriorating too much
144: the understanding of the program.
145:
1.10 brouard 146: 2003-06-25 <brouard@BROUARD>
147:
148: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
149: exist so I changed back to asctime which exists.
150: (Module): Version 0.96b
151:
152: 2003-06-24 <brouard@BROUARD>
153:
154: * imach.c (Module): Some bugs corrected for windows. Also, when
155: mle=-1 a template is output in file "or"mypar.txt with the design
156: of the covariance matrix to be input.
157:
1.9 brouard 158: 2003-06-25 Brouard Nicolas <brouard@homebrou>
159:
160: * imach.c (Repository): Duplicated warning errors corrected.
161: (Repository): Elapsed time after each iteration is now output. It
162: helps to forecast when convergence will be reached. Elapsed time
163: is stamped in powell. We created a new html file for the graphs
164: concerning matrix of covariance. It has extension -cov.htm.
165:
1.8 brouard 166: 2003-06-23 Brouard Nicolas <brouard@homebrou>
167:
168: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
169:
170: 2003-06-18 Brouard Nicolas <brouard@homebrou>
171:
172: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
173:
1.7 brouard 174: 2003-06-17 Brouard Nicolas <brouard@homebrou>
175:
176:
177: * imach.c (Repository): Check when date of death was earlier that
178: current date of interview. It may happen when the death was just
179: prior to the death. In this case, dh was negative and likelihood
180: was wrong (infinity). We still send an "Error" but patch by
181: assuming that the date of death was just one stepm after the
182: interview.
183: (Repository): Because some people have very long ID (first column)
184: we changed int to long in num[] and we added a new lvector for
185: memory allocation. But we also truncated to 8 characters (left
186: truncation)
187:
188: (Repository): No more line truncation errors.
189:
190: 2003-06-14 Brouard Nicolas <brouard@homebrou>
191:
192: * imach.c (Repository): Add of a routine likelione (likelihood
193: only once) which prints on a text file
194: (ilk) the contributions to the likelihood for each
195: individual/wave.
196:
197: 2003-06-13 Brouard Nicolas <brouard@homebrou>
198: * imach.c (Repository): Replace "freqsummary" at a correct
199: place. It differs from routine "prevalence" which may be called
200: many times. Probs is memory consuming and must be used with
201: parcimony.
202:
203: 2003-06-17 <brouard@BROUARD>
204:
205: * timeval.h (Module): Added included file to make use of
206: gettimeofday working on win32 with cygwin.
207:
208: 2003-05-16 Brouard Nicolas <brouard@brouard>
209: * imach.c (Module): Insert of a warning if the delay between two
210: waves is negative.
211:
212: * imach.c (Module):
213:
214: 2003-05-03 <brouard@BROUARD>
215:
216: * imach.c: Some cleaning
217:
218: 2003-03-28 <brouard@BROUARD>
219: * imach.c (Module): In version up to 0.92 likelihood was computed
220: as if date of death was unknown. Death was treated as any other
221: health state: the date of the interview describes the actual state
222: and not the date of a change in health state. The former idea was
223: to consider that at each interview the state was recorded
224: (healthy, disable or death) and IMaCh was corrected; but when we
225: introduced the exact date of death then we should have modified
226: the contribution of an exact death to the likelihood. This new
227: contribution is smaller and very dependent of the step unit
228: stepm. It is no more the probability to die between last interview
229: and month of death but the probability to survive from last
230: interview up to one month before death multiplied by the
231: probability to die within a month. Thanks to Chris
232: Jackson for correcting this bug. Former versions increased
233: mortality artificially. The bad side is that we add another loop
234:
235:
236: which slows down the processing. The difference can be up to 10%
237:
238:
239: lower mortality.
240:
241:
242:
243:
244:
245: 2002-05-30 <brouard@BROUARD>
246:
247:
248:
249:
250:
251: *
252:
253:
254:
255:
256:
257: * imach.c (Module): Add correlation matrix of one-step
258:
259:
260: probabilities and covariance matrix
261:
262:
263:
264:
265:
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