Annotation of imach/src/ChangeLog, revision 1.39
1.39 ! brouard 1: 2019-05-20 Brouard Nicolas <brouard@brouard.name>
! 2:
! 3: * version.h: Summary: version 0.99.r19
! 4:
! 5: * imach.c: Summary: Projection syntax simplified
! 6: We can now start projections, forward or backward, from the mean date
! 7: of inteviews up to or down to a number of years of projection:
! 8: prevforecast=1 yearsfproj=15.3 mobil_average=0
! 9: or
! 10: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
! 11: or
! 12: prevbackcast=1 yearsbproj=12.3 mobil_average=1
! 13: or
! 14: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
! 15:
! 16: 2019-05-18 Brouard Nicolas <brouard@brouard.name>
! 17:
! 18: * imach.c: Summary: doxygen tex bug
! 19:
! 20: 2019-05-16 Brouard Nicolas <brouard@brouard.name>
! 21:
! 22: * imach.c: Summary: There was some wrong lines added
! 23:
! 24: 2019-05-09 Brouard Nicolas <brouard@brouard.name>
! 25:
! 26: * Makefile, imach.c: *** empty log message ***
! 27:
! 28: * ChangeLog: Summary: C=
! 29:
! 30: * imach.c: Summary: Some updates
! 31:
! 32: * imach.c: Summary: Before ncovmax
! 33:
! 34: * version.h: *** empty log message ***
! 35:
! 36: * imach.c: Summary: 0.99r18 unlimited number of individuals
! 37: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
! 38:
! 39: 2018-12-13 Brouard Nicolas <brouard@brouard.name>
! 40:
! 41: * imach.c: Summary: Bug for young ages (<-30) will be in r17
! 42:
! 43: 2018-12-05 Brouard Nicolas <brouard@brouard.name>
! 44:
! 45: * Makefile: Summary: 0.99r16
! 46:
! 47: 2018-05-02 Brouard Nicolas <brouard@brouard.name>
! 48:
! 49: * imach.c: Summary: Some bugs fixed
! 50:
! 51: 2018-05-02 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
! 52:
! 53: * imach.c: Summary: Bug for young ages (<-30) will be in r17
! 54:
1.38 brouard 55: 2018-05-02 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
56:
57: * imach.c: Summary: Some bugs fixed
58:
59: 2018-05-01 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
60:
61: * imach.c:
62: Summary: Bug fixed by providing frequencies only for non missing covariates
63:
64: 2018-04-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
65:
66: * imach.c: Summary: some minor bugs
67:
68: 2018-04-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
69:
70: * README.txt: *** empty log message ***
71:
72: * imach.c: Summary: Some bugs fixed, valgrind tested
73:
74: 2018-04-20 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
75:
76: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
77:
78: * imach.c:
79: Summary: Computing mean and stdeviation of fixed quantitative variables
80:
81: 2018-04-19 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
82:
83: * imach.c: Summary: Some minor bugs fixed
84:
85: * version.h: *** empty log message ***
86:
87: 2018-02-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
88:
89: * imach.c: *** empty log message ***
90:
91: * imach.c: Summary: Adding second argument for quitting
92:
93: 2018-02-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
94:
95: * Makefile, README.txt, imach.c: Summary: 0.99r15
96: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
97:
98: 2017-07-20 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
99:
100: * imach.c: Summary: temporary working
101:
102: 2017-07-19 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
103:
104: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
105:
106: 2017-07-17 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
107:
108: * imach.c: Summary: BOM files can be read now
109:
110: 2017-06-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
111:
112: * imach.c: Summary: Graphs improvements
113:
114: * imach.c: Summary: Saito's color
115:
116: 2017-06-29 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
117:
118: * imach.c: Summary: Version 0.99r14
119:
120: 2017-06-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
121:
122: * imach.c: Summary: More documentation on projections
123:
124: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
125:
126: * imach.c: Summary: Some bug with rint
127:
128: 2017-05-24 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
129:
130: * imach.c: *** empty log message ***
131:
132: 2017-05-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
133:
134: * imach.c: Summary: Code into subroutine, cleanings
135:
136: 2017-05-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
137:
138: * imach.c:
139: Summary: backprojection and confidence intervals of backprevalence
140:
141: 2017-05-13 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
142:
143: * imach.c: Summary: temporary save for backprojection
144:
145: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
146:
147: 2017-04-26 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
148:
149: * imach.c: Summary: imach 0.99r13 Some bugs fixed
150:
151: * imach.c: Summary: Labels in graphs
152:
153: 2017-04-24 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
154:
155: * imach.c: Summary: to save
156:
157: 2017-04-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
158:
159: * imach.c: *** empty log message ***
160:
161: 2017-04-05 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
162:
163: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
164:
165: 2017-04-04 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
166:
167: * imach.c: Summary: Gnuplot indexations fixed (humm)
168:
169: * imach.c:
170: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
171:
172: 2017-04-03 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
173:
174: * imach.c: Summary: Version 0.99r12
175: Some cleanings, conformed with updated documentation.
176:
177: 2017-03-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
178:
179: * version.h: *** empty log message ***
180:
181: * version.h: Summary:0.99r11
182:
183: 2017-03-29 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
184:
185: * imach.c: Summary: Temp
186:
187: 2017-03-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
188:
189: * imach.c: Summary: Temporary
190:
191: 2017-03-08 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
192:
193: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
194:
195: * imach.c: Summary: Fixing data parameter line
196:
197: 2016-12-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
198:
199: * imach.c: Summary: 0.99 in progress
200:
201: 2016-09-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
202:
203: * imach.c: *** empty log message ***
204:
205: * imach.c: Summary: not working
206:
207: 2016-09-08 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
208:
209: * imach.c: Summary: continue
210:
211: 2016-09-07 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
212:
213: * imach.c: Summary: Starting values from frequencies
214:
215: * imach.c: *** empty log message ***
216:
217: 2016-09-02 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
218:
219: * imach.c: *** empty log message ***
220:
221: 2016-08-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
222:
223: * imach.c: Summary: Fixing a lots
224:
225: 2016-08-29 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
226:
227: * imach.c: Summary: gnuplot problem in Back projection to fix
228:
229: * imach.c: Summary: Better
230:
231: 2016-08-26 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
232:
233: * imach.c:
234: Summary: Improvement in Powell output in order to copy and paste
235:
236: * imach.c: Summary: Starting tests of 0.99
237:
238: * imach.c: Summary: to valgrind
239:
240: 2016-08-25 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
241:
242: * imach.c: *** empty log message ***
243:
244: 2016-08-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
245:
246: * imach.c: *** empty log message ***
247:
248: * imach.c: Summary: not working
249:
250: 2016-08-22 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
251:
252: * imach.c: Summary: not working
253:
254: * imach.c: Summary: Not working
255:
256: 2016-07-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
257:
258: * imach.c: Summary: Completing for func too
259:
260: 2016-07-22 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
261:
262: * imach.c: Summary: Fixing some arrays, still debugging
263:
264: 2016-07-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
265:
266: * imach.c:
267: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
268:
269: 2016-07-12 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
270:
271: * imach.c: Summary: temp
272:
273: * imach.c: Summary: saving but not running
274:
275: 2016-07-01 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
276:
277: * imach.c: Summary: Fixes
278:
279: 2016-02-19 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
280:
281: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
282:
283: * setup.iss, Makefile, version.h: *** empty log message ***
284:
285: * imach.c: Summary: temporary
286:
287: 2016-02-17 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
288:
289: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
290:
291: 2016-02-16 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
292:
293: * imach.c: Summary: minor bug
294:
295: * imach.c: Summary: 0.99r2
296:
297: 2016-02-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
298:
299: * imach.c: *** empty log message ***
300:
301: 2016-02-12 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
302:
303: * imach.c: Summary: 0.99 Back projections
304:
305: 2015-12-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
306:
307: * imach.c: Summary: Experimental backcast
308:
309: 2015-12-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
310:
311: * imach.c: Summary: 0.98r4 Warning and status=-2
312:
313: Version 0.98r4 is now:
314: - displaying an error when status is -1, date of interview unknown and date of death known;
315: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
316: Older changes concerning s=-2, dating from 2005 have been supersed.
317:
318: * Makefile: *** empty log message ***
319:
320: 2015-12-16 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
321:
322: * Makefile: *** empty log message ***
323:
324: * imach.c: Summary: 0.98r4 working
325:
326: * Makefile: Summary: linuxrpm added
327:
328: * Makefile: *** empty log message ***
329:
330: * imach.c: Summary: temporary not working
331:
332: 2015-12-11 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
333:
334: * imach.c: Summary: 0.98r4
335:
336: 2015-12-08 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
337:
338: * Makefile: *** empty log message ***
339:
340: 2015-11-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
341:
342: * Makefile:
343: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
344:
345: * imach.c: Summary: minor typo
346:
347: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
348:
349: Author: Nicolas Brouard
350:
351: 2015-11-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
352:
353: * imach.c: Summary: Start working on projected prevalences
354:
355: 2015-11-17 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
356:
357: * imach.c: Summary: Adding ftolpl parameter
358: Author: N Brouard
359:
360: We had difficulties to get smoothed confidence intervals. It was due
361: to the period prevalence which wasn't computed accurately. The inner
362: parameter ftolpl is now an outer parameter of the .imach parameter
363: file after estepm. If ftolpl is small 1.e-4 and estepm too,
364: computation are long.
365:
366: * version.h: *** empty log message ***
367:
368: * imach.c: Summary: temporary
369:
370: 2015-10-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
371:
372: * Makefile: *** empty log message ***
373:
374: * setup.iss.in: Summary: some new subdirs
375:
376: * imach.c: *** empty log message ***
377:
378: * setup.iss.in:
379: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
380:
381: 2015-10-24 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
382:
383: * imach.c: *** empty log message ***
384:
385: 2015-10-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
386:
387: * imach.c:
388: Summary: 0.98r3 some clarification for graphs on likelihood contributions
389:
390: 2015-10-01 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
391:
392: * imach.c: Summary: Some new graphs of contribution to likelihood
393:
394: 2015-09-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
395:
396: * Makefile:
397: Summary: Version read from version.h, itself read with cmake
398:
399: * imach.c: Summary: looking at better estimation of the hessian
400:
401: Also a better criteria for convergence to the period prevalence And
402: therefore adding the number of years needed to converge. (The
403: prevalence in any alive state shold sum to one
404:
405: * Makefile: *** empty log message ***
406:
407: 2015-09-22 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
408:
409: * imach.c:
410: Summary: Adding some overall graph on contribution to likelihood. Might change
411:
412: 2015-09-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
413:
414: * Makefile: *** empty log message ***
415:
416: * imach.c: Summary: 0.98r0
417:
418: - Some new graphs like suvival functions
419: - Some bugs fixed like model=1+age+V2.
420:
421: * ChangeLog, Makefile: Summary: 0.98r0
422:
423: * CMakeLists.txt: Summary: Some tests for setup.iss
424:
1.37 brouard 425: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
426:
427: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
428:
1.36 brouard 429: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
430:
431: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
432:
1.35 brouard 433: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
434:
435: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
436:
437: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
438:
439: * imach.c (Module): Merging 1.61 to 1.162
440:
441: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
442:
443: * prevlim.h (Module):
444:
1.34 brouard 445: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
446:
447: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
448: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
449:
1.33 brouard 450: 2010-04-29 brouard <brouard@ined.fr>
451:
452: * imach.c (Module): Checking covariates for more complex models
453: than V1+V2. A lot of change to be done. Unstable.
454:
455: 2010-04-26 brouard <brouard@ined.fr>
456:
457: * imach.c (Module): merging some libgsl code. Fixing computation
458: of likelione (using inter/intrapolation if mle = 0) in order to
459: get same likelihood as if mle=1.
460: Some cleaning of code and comments added.
461:
1.32 brouard 462: 2009-10-29 brouard <brouard@ined.fr>
463:
464: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
465:
1.31 brouard 466: 2006-06-30 Brouard Nicolas <brouard@localhost>
467:
468: * imach.c (Module): Clarifications on computing e.j
469:
1.30 brouard 470: 2006-04-28 Brouard Nicolas <brouard@localhost>
471:
472: * imach.c (Module): Yes the sum of survivors was wrong since
473: imach-114 because nhstepm was no more computed in the age
474: loop. Now we define nhstepma in the age loop.
1.31 brouard 475: (Module): In order to speed up (in case of numerous covariates) we
476: compute health expectancies (without variances) in a first step
477: and then all the health expectancies with variances or standard
478: deviation (needs data from the Hessian matrices) which slows the
479: computation.
480: In the future we should be able to stop the program is only health
481: expectancies and graph are needed without standard deviations.
1.30 brouard 482:
1.29 lievre 483: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
484:
485: * imach.iss (Module):
486:
487: * imach.c (Module): bugs in evsi + population file added in htm output file
488:
489: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
490:
491: * imach.c (Module):
492:
1.27 brouard 493: 2006-03-20 Brouard Nicolas <brouard@localhost>
494:
1.28 brouard 495: * imach.c (Module): <title> changed, corresponds to .htm file
496: name. <head> headers where missing.
497:
1.27 brouard 498: * Makefile (Module): 0.98g
499:
500: * imach.c (Module): Weights can have a decimal point as for
501: English (a comma might work with a correct LC_NUMERIC environment,
502: otherwise the weight is truncated).
503: Modification of warning when the covariates values are not 0 or
504: 1.
505: Version 0.98g
506:
1.24 lievre 507: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
508:
1.26 lievre 509: * imach.c (Module): Comments concerning covariates added
510:
1.25 lievre 511: * noreg-setup.iss (Module): Version 0.98f
512:
1.24 lievre 513: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
514:
515: * imach.c (Module): refinements in the computation of lli if
516: status=-2 in order to have more reliable computation if stepm is
517: not 1 month. Version 0.98f
518:
1.22 brouard 519: 2006-03-15 Brouard Nicolas <brouard@localhost>
520:
521: * imach.c (Module): Bug if status = -2, the loglikelihood was
522: computed as likelihood omitting the logarithm. Version O.98e
523:
1.21 brouard 524: 2006-03-14 Brouard Nicolas <brouard@localhost>
525:
526: * imach.c (Module): varevsij Comments added explaining the second
527: table of variances if popbased=1 .
528: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
529: (Module): Function pstamp added
530: (Module): Version 0.98d
531:
1.20 brouard 532: 2006-03-06 Brouard Nicolas <brouard@localhost>
533:
534: * imach.c (Module): Variance-covariance wrong links and
535: varian-covariance of ej. is needed (Saito).
536:
1.19 brouard 537: 2006-02-27 Brouard Nicolas <brouard@localhost>
538:
539: * imach.c (Module): One freematrix added in mlikeli!
540:
541: 2006-02-26 Brouard Nicolas <brouard@localhost>
542:
543: * imach.c (Module): Some improvements in processing parameter
544: filename with strsep.
545:
546: 2006-02-24 Brouard Nicolas <brouard@localhost>
547:
548: * imach.c (Module): Memory leaks checks with valgrind and:
549: datafile was not closed, some imatrix were not freed and on matrix
550: allocation too.
551:
1.16 lievre 552: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
553:
1.18 lievre 554: * strsep.c (Module): Inclusion because not in mingw32!!!
555:
1.17 lievre 556: * setup.iss.in (Module): IMACHSETUPVERSION added
557:
558: * noreg-setup.iss (Module): added to cvs tree
559:
1.16 lievre 560: * Makefile (Module): IMACHSETUPVERSION added
561:
1.15 brouard 562: 2006-01-30 BROUARD Nicolas <brouard@localhost>
563:
1.23 brouard 564: * Makefile (Module, Module): Latest Makefile
565:
1.15 brouard 566: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
567:
568: 2006-01-27 BROUARD Nicolas <brouard@localhost>
569:
570: * noreg-setup.iss (Module): ADDED
571:
572: 2006-01-24 BROUARD Nicolas <brouard@localhost>
573:
574: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
575:
1.14 brouard 576: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
577:
578: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
579:
580: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
581:
1.12 lievre 582: 2005-09-30 <lievre@PC_00595>
583:
584: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 585: (Module): If the status is missing at the last wave but we know
586: that the person is alive, then we can code his/her status as -2
587: (instead of missing=-1 in earlier versions) and his/her
588: contributions to the likelihood is 1 - Prob of dying from last
589: health status (= 1-p13= p11+p12 in the easiest case of somebody in
590: the healthy state at last known wave). Version is 0.98
1.12 lievre 591:
1.11 brouard 592: 2004-05-20 Brouard Nicolas <brouard@localhost>
593:
594: * imach.c (Repository):
595: Agnes added a direct estimation of mortality (without the need of
596: computing period prevalence and differential mortality). Thus here
597: is version 0.97a which has been distributed to some people at
598: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
599: mortality using covariates is not done today. Estimating direct
600: mortality is a very different process because it doesn't need
601: interpolation because it is easy to get the lx from the force of
602: the mortality mux in the simplest case as for a Gompertz (log mux
603: = a + b*x . But we have been able to incorporate the new code
604: within former imach program (0.96d) without deteriorating too much
605: the understanding of the program.
606:
1.10 brouard 607: 2003-06-25 <brouard@BROUARD>
608:
609: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
610: exist so I changed back to asctime which exists.
611: (Module): Version 0.96b
612:
613: 2003-06-24 <brouard@BROUARD>
614:
615: * imach.c (Module): Some bugs corrected for windows. Also, when
616: mle=-1 a template is output in file "or"mypar.txt with the design
617: of the covariance matrix to be input.
618:
1.9 brouard 619: 2003-06-25 Brouard Nicolas <brouard@homebrou>
620:
621: * imach.c (Repository): Duplicated warning errors corrected.
622: (Repository): Elapsed time after each iteration is now output. It
623: helps to forecast when convergence will be reached. Elapsed time
624: is stamped in powell. We created a new html file for the graphs
625: concerning matrix of covariance. It has extension -cov.htm.
626:
1.8 brouard 627: 2003-06-23 Brouard Nicolas <brouard@homebrou>
628:
629: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
630:
631: 2003-06-18 Brouard Nicolas <brouard@homebrou>
632:
633: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
634:
1.7 brouard 635: 2003-06-17 Brouard Nicolas <brouard@homebrou>
636:
637:
638: * imach.c (Repository): Check when date of death was earlier that
639: current date of interview. It may happen when the death was just
640: prior to the death. In this case, dh was negative and likelihood
641: was wrong (infinity). We still send an "Error" but patch by
642: assuming that the date of death was just one stepm after the
643: interview.
644: (Repository): Because some people have very long ID (first column)
645: we changed int to long in num[] and we added a new lvector for
646: memory allocation. But we also truncated to 8 characters (left
647: truncation)
648:
649: (Repository): No more line truncation errors.
650:
651: 2003-06-14 Brouard Nicolas <brouard@homebrou>
652:
653: * imach.c (Repository): Add of a routine likelione (likelihood
654: only once) which prints on a text file
655: (ilk) the contributions to the likelihood for each
656: individual/wave.
657:
658: 2003-06-13 Brouard Nicolas <brouard@homebrou>
659: * imach.c (Repository): Replace "freqsummary" at a correct
660: place. It differs from routine "prevalence" which may be called
661: many times. Probs is memory consuming and must be used with
662: parcimony.
663:
664: 2003-06-17 <brouard@BROUARD>
665:
666: * timeval.h (Module): Added included file to make use of
667: gettimeofday working on win32 with cygwin.
668:
669: 2003-05-16 Brouard Nicolas <brouard@brouard>
670: * imach.c (Module): Insert of a warning if the delay between two
671: waves is negative.
672:
673: * imach.c (Module):
674:
675: 2003-05-03 <brouard@BROUARD>
676:
677: * imach.c: Some cleaning
678:
679: 2003-03-28 <brouard@BROUARD>
680: * imach.c (Module): In version up to 0.92 likelihood was computed
681: as if date of death was unknown. Death was treated as any other
682: health state: the date of the interview describes the actual state
683: and not the date of a change in health state. The former idea was
684: to consider that at each interview the state was recorded
685: (healthy, disable or death) and IMaCh was corrected; but when we
686: introduced the exact date of death then we should have modified
687: the contribution of an exact death to the likelihood. This new
688: contribution is smaller and very dependent of the step unit
689: stepm. It is no more the probability to die between last interview
690: and month of death but the probability to survive from last
691: interview up to one month before death multiplied by the
692: probability to die within a month. Thanks to Chris
693: Jackson for correcting this bug. Former versions increased
694: mortality artificially. The bad side is that we add another loop
695:
696:
697: which slows down the processing. The difference can be up to 10%
698:
699:
700: lower mortality.
701:
702:
703:
704:
705:
706: 2002-05-30 <brouard@BROUARD>
707:
708:
709:
710:
711:
712: *
713:
714:
715:
716:
717:
718: * imach.c (Module): Add correlation matrix of one-step
719:
720:
721: probabilities and covariance matrix
722:
723:
724:
725:
726:
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