Annotation of imach/src/ChangeLog, revision 1.40
1.40 ! brouard 1: 2020-02-22 Brouard Nicolas <brouard@brouard.name>
! 2:
! 3: * (Module): imach.c Update mle=-3 (for computing Life expectancy
! 4: and life table from the data without any state)
! 5:
1.39 brouard 6: 2019-05-20 Brouard Nicolas <brouard@brouard.name>
7:
8: * version.h: Summary: version 0.99.r19
9:
10: * imach.c: Summary: Projection syntax simplified
11: We can now start projections, forward or backward, from the mean date
12: of inteviews up to or down to a number of years of projection:
13: prevforecast=1 yearsfproj=15.3 mobil_average=0
14: or
15: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
16: or
17: prevbackcast=1 yearsbproj=12.3 mobil_average=1
18: or
19: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
20:
21: 2019-05-18 Brouard Nicolas <brouard@brouard.name>
22:
23: * imach.c: Summary: doxygen tex bug
24:
25: 2019-05-16 Brouard Nicolas <brouard@brouard.name>
26:
27: * imach.c: Summary: There was some wrong lines added
28:
29: 2019-05-09 Brouard Nicolas <brouard@brouard.name>
30:
31: * Makefile, imach.c: *** empty log message ***
32:
33: * ChangeLog: Summary: C=
34:
35: * imach.c: Summary: Some updates
36:
37: * imach.c: Summary: Before ncovmax
38:
39: * version.h: *** empty log message ***
40:
41: * imach.c: Summary: 0.99r18 unlimited number of individuals
42: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
43:
44: 2018-12-13 Brouard Nicolas <brouard@brouard.name>
45:
46: * imach.c: Summary: Bug for young ages (<-30) will be in r17
47:
48: 2018-12-05 Brouard Nicolas <brouard@brouard.name>
49:
50: * Makefile: Summary: 0.99r16
51:
52: 2018-05-02 Brouard Nicolas <brouard@brouard.name>
53:
54: * imach.c: Summary: Some bugs fixed
55:
56: 2018-05-02 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
57:
58: * imach.c: Summary: Bug for young ages (<-30) will be in r17
59:
1.38 brouard 60: 2018-05-02 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
61:
62: * imach.c: Summary: Some bugs fixed
63:
64: 2018-05-01 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
65:
66: * imach.c:
67: Summary: Bug fixed by providing frequencies only for non missing covariates
68:
69: 2018-04-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
70:
71: * imach.c: Summary: some minor bugs
72:
73: 2018-04-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
74:
75: * README.txt: *** empty log message ***
76:
77: * imach.c: Summary: Some bugs fixed, valgrind tested
78:
79: 2018-04-20 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
80:
81: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
82:
83: * imach.c:
84: Summary: Computing mean and stdeviation of fixed quantitative variables
85:
86: 2018-04-19 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
87:
88: * imach.c: Summary: Some minor bugs fixed
89:
90: * version.h: *** empty log message ***
91:
92: 2018-02-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
93:
94: * imach.c: *** empty log message ***
95:
96: * imach.c: Summary: Adding second argument for quitting
97:
98: 2018-02-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
99:
100: * Makefile, README.txt, imach.c: Summary: 0.99r15
101: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
102:
103: 2017-07-20 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
104:
105: * imach.c: Summary: temporary working
106:
107: 2017-07-19 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
108:
109: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
110:
111: 2017-07-17 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
112:
113: * imach.c: Summary: BOM files can be read now
114:
115: 2017-06-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
116:
117: * imach.c: Summary: Graphs improvements
118:
119: * imach.c: Summary: Saito's color
120:
121: 2017-06-29 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
122:
123: * imach.c: Summary: Version 0.99r14
124:
125: 2017-06-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
126:
127: * imach.c: Summary: More documentation on projections
128:
129: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
130:
131: * imach.c: Summary: Some bug with rint
132:
133: 2017-05-24 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
134:
135: * imach.c: *** empty log message ***
136:
137: 2017-05-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
138:
139: * imach.c: Summary: Code into subroutine, cleanings
140:
141: 2017-05-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
142:
143: * imach.c:
144: Summary: backprojection and confidence intervals of backprevalence
145:
146: 2017-05-13 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
147:
148: * imach.c: Summary: temporary save for backprojection
149:
150: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
151:
152: 2017-04-26 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
153:
154: * imach.c: Summary: imach 0.99r13 Some bugs fixed
155:
156: * imach.c: Summary: Labels in graphs
157:
158: 2017-04-24 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
159:
160: * imach.c: Summary: to save
161:
162: 2017-04-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
163:
164: * imach.c: *** empty log message ***
165:
166: 2017-04-05 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
167:
168: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
169:
170: 2017-04-04 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
171:
172: * imach.c: Summary: Gnuplot indexations fixed (humm)
173:
174: * imach.c:
175: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
176:
177: 2017-04-03 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
178:
179: * imach.c: Summary: Version 0.99r12
180: Some cleanings, conformed with updated documentation.
181:
182: 2017-03-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
183:
184: * version.h: *** empty log message ***
185:
186: * version.h: Summary:0.99r11
187:
188: 2017-03-29 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
189:
190: * imach.c: Summary: Temp
191:
192: 2017-03-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
193:
194: * imach.c: Summary: Temporary
195:
196: 2017-03-08 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
197:
198: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
199:
200: * imach.c: Summary: Fixing data parameter line
201:
202: 2016-12-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
203:
204: * imach.c: Summary: 0.99 in progress
205:
206: 2016-09-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
207:
208: * imach.c: *** empty log message ***
209:
210: * imach.c: Summary: not working
211:
212: 2016-09-08 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
213:
214: * imach.c: Summary: continue
215:
216: 2016-09-07 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
217:
218: * imach.c: Summary: Starting values from frequencies
219:
220: * imach.c: *** empty log message ***
221:
222: 2016-09-02 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
223:
224: * imach.c: *** empty log message ***
225:
226: 2016-08-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
227:
228: * imach.c: Summary: Fixing a lots
229:
230: 2016-08-29 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
231:
232: * imach.c: Summary: gnuplot problem in Back projection to fix
233:
234: * imach.c: Summary: Better
235:
236: 2016-08-26 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
237:
238: * imach.c:
239: Summary: Improvement in Powell output in order to copy and paste
240:
241: * imach.c: Summary: Starting tests of 0.99
242:
243: * imach.c: Summary: to valgrind
244:
245: 2016-08-25 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
246:
247: * imach.c: *** empty log message ***
248:
249: 2016-08-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
250:
251: * imach.c: *** empty log message ***
252:
253: * imach.c: Summary: not working
254:
255: 2016-08-22 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
256:
257: * imach.c: Summary: not working
258:
259: * imach.c: Summary: Not working
260:
261: 2016-07-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
262:
263: * imach.c: Summary: Completing for func too
264:
265: 2016-07-22 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
266:
267: * imach.c: Summary: Fixing some arrays, still debugging
268:
269: 2016-07-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
270:
271: * imach.c:
272: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
273:
274: 2016-07-12 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
275:
276: * imach.c: Summary: temp
277:
278: * imach.c: Summary: saving but not running
279:
280: 2016-07-01 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
281:
282: * imach.c: Summary: Fixes
283:
284: 2016-02-19 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
285:
286: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
287:
288: * setup.iss, Makefile, version.h: *** empty log message ***
289:
290: * imach.c: Summary: temporary
291:
292: 2016-02-17 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
293:
294: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
295:
296: 2016-02-16 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
297:
298: * imach.c: Summary: minor bug
299:
300: * imach.c: Summary: 0.99r2
301:
302: 2016-02-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
303:
304: * imach.c: *** empty log message ***
305:
306: 2016-02-12 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
307:
308: * imach.c: Summary: 0.99 Back projections
309:
310: 2015-12-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
311:
312: * imach.c: Summary: Experimental backcast
313:
314: 2015-12-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
315:
316: * imach.c: Summary: 0.98r4 Warning and status=-2
317:
318: Version 0.98r4 is now:
319: - displaying an error when status is -1, date of interview unknown and date of death known;
320: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
321: Older changes concerning s=-2, dating from 2005 have been supersed.
322:
323: * Makefile: *** empty log message ***
324:
325: 2015-12-16 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
326:
327: * Makefile: *** empty log message ***
328:
329: * imach.c: Summary: 0.98r4 working
330:
331: * Makefile: Summary: linuxrpm added
332:
333: * Makefile: *** empty log message ***
334:
335: * imach.c: Summary: temporary not working
336:
337: 2015-12-11 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
338:
339: * imach.c: Summary: 0.98r4
340:
341: 2015-12-08 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
342:
343: * Makefile: *** empty log message ***
344:
345: 2015-11-21 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
346:
347: * Makefile:
348: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
349:
350: * imach.c: Summary: minor typo
351:
352: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
353:
354: Author: Nicolas Brouard
355:
356: 2015-11-18 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
357:
358: * imach.c: Summary: Start working on projected prevalences
359:
360: 2015-11-17 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
361:
362: * imach.c: Summary: Adding ftolpl parameter
363: Author: N Brouard
364:
365: We had difficulties to get smoothed confidence intervals. It was due
366: to the period prevalence which wasn't computed accurately. The inner
367: parameter ftolpl is now an outer parameter of the .imach parameter
368: file after estepm. If ftolpl is small 1.e-4 and estepm too,
369: computation are long.
370:
371: * version.h: *** empty log message ***
372:
373: * imach.c: Summary: temporary
374:
375: 2015-10-27 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
376:
377: * Makefile: *** empty log message ***
378:
379: * setup.iss.in: Summary: some new subdirs
380:
381: * imach.c: *** empty log message ***
382:
383: * setup.iss.in:
384: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
385:
386: 2015-10-24 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
387:
388: * imach.c: *** empty log message ***
389:
390: 2015-10-23 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
391:
392: * imach.c:
393: Summary: 0.98r3 some clarification for graphs on likelihood contributions
394:
395: 2015-10-01 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
396:
397: * imach.c: Summary: Some new graphs of contribution to likelihood
398:
399: 2015-09-30 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
400:
401: * Makefile:
402: Summary: Version read from version.h, itself read with cmake
403:
404: * imach.c: Summary: looking at better estimation of the hessian
405:
406: Also a better criteria for convergence to the period prevalence And
407: therefore adding the number of years needed to converge. (The
408: prevalence in any alive state shold sum to one
409:
410: * Makefile: *** empty log message ***
411:
412: 2015-09-22 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
413:
414: * imach.c:
415: Summary: Adding some overall graph on contribution to likelihood. Might change
416:
417: 2015-09-15 Brouard Nicolas <brouard@brouard-antoine.homelinux.com>
418:
419: * Makefile: *** empty log message ***
420:
421: * imach.c: Summary: 0.98r0
422:
423: - Some new graphs like suvival functions
424: - Some bugs fixed like model=1+age+V2.
425:
426: * ChangeLog, Makefile: Summary: 0.98r0
427:
428: * CMakeLists.txt: Summary: Some tests for setup.iss
429:
1.37 brouard 430: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
431:
432: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
433:
1.36 brouard 434: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
435:
436: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
437:
1.35 brouard 438: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
439:
440: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
441:
442: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
443:
444: * imach.c (Module): Merging 1.61 to 1.162
445:
446: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
447:
448: * prevlim.h (Module):
449:
1.34 brouard 450: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
451:
452: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
453: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
454:
1.33 brouard 455: 2010-04-29 brouard <brouard@ined.fr>
456:
457: * imach.c (Module): Checking covariates for more complex models
458: than V1+V2. A lot of change to be done. Unstable.
459:
460: 2010-04-26 brouard <brouard@ined.fr>
461:
462: * imach.c (Module): merging some libgsl code. Fixing computation
463: of likelione (using inter/intrapolation if mle = 0) in order to
464: get same likelihood as if mle=1.
465: Some cleaning of code and comments added.
466:
1.32 brouard 467: 2009-10-29 brouard <brouard@ined.fr>
468:
469: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
470:
1.31 brouard 471: 2006-06-30 Brouard Nicolas <brouard@localhost>
472:
473: * imach.c (Module): Clarifications on computing e.j
474:
1.30 brouard 475: 2006-04-28 Brouard Nicolas <brouard@localhost>
476:
477: * imach.c (Module): Yes the sum of survivors was wrong since
478: imach-114 because nhstepm was no more computed in the age
479: loop. Now we define nhstepma in the age loop.
1.31 brouard 480: (Module): In order to speed up (in case of numerous covariates) we
481: compute health expectancies (without variances) in a first step
482: and then all the health expectancies with variances or standard
483: deviation (needs data from the Hessian matrices) which slows the
484: computation.
485: In the future we should be able to stop the program is only health
486: expectancies and graph are needed without standard deviations.
1.30 brouard 487:
1.29 lievre 488: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
489:
490: * imach.iss (Module):
491:
492: * imach.c (Module): bugs in evsi + population file added in htm output file
493:
494: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
495:
496: * imach.c (Module):
497:
1.27 brouard 498: 2006-03-20 Brouard Nicolas <brouard@localhost>
499:
1.28 brouard 500: * imach.c (Module): <title> changed, corresponds to .htm file
501: name. <head> headers where missing.
502:
1.27 brouard 503: * Makefile (Module): 0.98g
504:
505: * imach.c (Module): Weights can have a decimal point as for
506: English (a comma might work with a correct LC_NUMERIC environment,
507: otherwise the weight is truncated).
508: Modification of warning when the covariates values are not 0 or
509: 1.
510: Version 0.98g
511:
1.24 lievre 512: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
513:
1.26 lievre 514: * imach.c (Module): Comments concerning covariates added
515:
1.25 lievre 516: * noreg-setup.iss (Module): Version 0.98f
517:
1.24 lievre 518: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
519:
520: * imach.c (Module): refinements in the computation of lli if
521: status=-2 in order to have more reliable computation if stepm is
522: not 1 month. Version 0.98f
523:
1.22 brouard 524: 2006-03-15 Brouard Nicolas <brouard@localhost>
525:
526: * imach.c (Module): Bug if status = -2, the loglikelihood was
527: computed as likelihood omitting the logarithm. Version O.98e
528:
1.21 brouard 529: 2006-03-14 Brouard Nicolas <brouard@localhost>
530:
531: * imach.c (Module): varevsij Comments added explaining the second
532: table of variances if popbased=1 .
533: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
534: (Module): Function pstamp added
535: (Module): Version 0.98d
536:
1.20 brouard 537: 2006-03-06 Brouard Nicolas <brouard@localhost>
538:
539: * imach.c (Module): Variance-covariance wrong links and
540: varian-covariance of ej. is needed (Saito).
541:
1.19 brouard 542: 2006-02-27 Brouard Nicolas <brouard@localhost>
543:
544: * imach.c (Module): One freematrix added in mlikeli!
545:
546: 2006-02-26 Brouard Nicolas <brouard@localhost>
547:
548: * imach.c (Module): Some improvements in processing parameter
549: filename with strsep.
550:
551: 2006-02-24 Brouard Nicolas <brouard@localhost>
552:
553: * imach.c (Module): Memory leaks checks with valgrind and:
554: datafile was not closed, some imatrix were not freed and on matrix
555: allocation too.
556:
1.16 lievre 557: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
558:
1.18 lievre 559: * strsep.c (Module): Inclusion because not in mingw32!!!
560:
1.17 lievre 561: * setup.iss.in (Module): IMACHSETUPVERSION added
562:
563: * noreg-setup.iss (Module): added to cvs tree
564:
1.16 lievre 565: * Makefile (Module): IMACHSETUPVERSION added
566:
1.15 brouard 567: 2006-01-30 BROUARD Nicolas <brouard@localhost>
568:
1.23 brouard 569: * Makefile (Module, Module): Latest Makefile
570:
1.15 brouard 571: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
572:
573: 2006-01-27 BROUARD Nicolas <brouard@localhost>
574:
575: * noreg-setup.iss (Module): ADDED
576:
577: 2006-01-24 BROUARD Nicolas <brouard@localhost>
578:
579: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
580:
1.14 brouard 581: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
582:
583: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
584:
585: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
586:
1.12 lievre 587: 2005-09-30 <lievre@PC_00595>
588:
589: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 590: (Module): If the status is missing at the last wave but we know
591: that the person is alive, then we can code his/her status as -2
592: (instead of missing=-1 in earlier versions) and his/her
593: contributions to the likelihood is 1 - Prob of dying from last
594: health status (= 1-p13= p11+p12 in the easiest case of somebody in
595: the healthy state at last known wave). Version is 0.98
1.12 lievre 596:
1.11 brouard 597: 2004-05-20 Brouard Nicolas <brouard@localhost>
598:
599: * imach.c (Repository):
600: Agnes added a direct estimation of mortality (without the need of
601: computing period prevalence and differential mortality). Thus here
602: is version 0.97a which has been distributed to some people at
603: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
604: mortality using covariates is not done today. Estimating direct
605: mortality is a very different process because it doesn't need
606: interpolation because it is easy to get the lx from the force of
607: the mortality mux in the simplest case as for a Gompertz (log mux
608: = a + b*x . But we have been able to incorporate the new code
609: within former imach program (0.96d) without deteriorating too much
610: the understanding of the program.
611:
1.10 brouard 612: 2003-06-25 <brouard@BROUARD>
613:
614: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
615: exist so I changed back to asctime which exists.
616: (Module): Version 0.96b
617:
618: 2003-06-24 <brouard@BROUARD>
619:
620: * imach.c (Module): Some bugs corrected for windows. Also, when
621: mle=-1 a template is output in file "or"mypar.txt with the design
622: of the covariance matrix to be input.
623:
1.9 brouard 624: 2003-06-25 Brouard Nicolas <brouard@homebrou>
625:
626: * imach.c (Repository): Duplicated warning errors corrected.
627: (Repository): Elapsed time after each iteration is now output. It
628: helps to forecast when convergence will be reached. Elapsed time
629: is stamped in powell. We created a new html file for the graphs
630: concerning matrix of covariance. It has extension -cov.htm.
631:
1.8 brouard 632: 2003-06-23 Brouard Nicolas <brouard@homebrou>
633:
634: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
635:
636: 2003-06-18 Brouard Nicolas <brouard@homebrou>
637:
638: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
639:
1.7 brouard 640: 2003-06-17 Brouard Nicolas <brouard@homebrou>
641:
642:
643: * imach.c (Repository): Check when date of death was earlier that
644: current date of interview. It may happen when the death was just
645: prior to the death. In this case, dh was negative and likelihood
646: was wrong (infinity). We still send an "Error" but patch by
647: assuming that the date of death was just one stepm after the
648: interview.
649: (Repository): Because some people have very long ID (first column)
650: we changed int to long in num[] and we added a new lvector for
651: memory allocation. But we also truncated to 8 characters (left
652: truncation)
653:
654: (Repository): No more line truncation errors.
655:
656: 2003-06-14 Brouard Nicolas <brouard@homebrou>
657:
658: * imach.c (Repository): Add of a routine likelione (likelihood
659: only once) which prints on a text file
660: (ilk) the contributions to the likelihood for each
661: individual/wave.
662:
663: 2003-06-13 Brouard Nicolas <brouard@homebrou>
664: * imach.c (Repository): Replace "freqsummary" at a correct
665: place. It differs from routine "prevalence" which may be called
666: many times. Probs is memory consuming and must be used with
667: parcimony.
668:
669: 2003-06-17 <brouard@BROUARD>
670:
671: * timeval.h (Module): Added included file to make use of
672: gettimeofday working on win32 with cygwin.
673:
674: 2003-05-16 Brouard Nicolas <brouard@brouard>
675: * imach.c (Module): Insert of a warning if the delay between two
676: waves is negative.
677:
678: * imach.c (Module):
679:
680: 2003-05-03 <brouard@BROUARD>
681:
682: * imach.c: Some cleaning
683:
684: 2003-03-28 <brouard@BROUARD>
685: * imach.c (Module): In version up to 0.92 likelihood was computed
686: as if date of death was unknown. Death was treated as any other
687: health state: the date of the interview describes the actual state
688: and not the date of a change in health state. The former idea was
689: to consider that at each interview the state was recorded
690: (healthy, disable or death) and IMaCh was corrected; but when we
691: introduced the exact date of death then we should have modified
692: the contribution of an exact death to the likelihood. This new
693: contribution is smaller and very dependent of the step unit
694: stepm. It is no more the probability to die between last interview
695: and month of death but the probability to survive from last
696: interview up to one month before death multiplied by the
697: probability to die within a month. Thanks to Chris
698: Jackson for correcting this bug. Former versions increased
699: mortality artificially. The bad side is that we add another loop
700:
701:
702: which slows down the processing. The difference can be up to 10%
703:
704:
705: lower mortality.
706:
707:
708:
709:
710:
711: 2002-05-30 <brouard@BROUARD>
712:
713:
714:
715:
716:
717: *
718:
719:
720:
721:
722:
723: * imach.c (Module): Add correlation matrix of one-step
724:
725:
726: probabilities and covariance matrix
727:
728:
729:
730:
731:
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