Annotation of imach/src/ChangeLog, revision 1.46
1.46 ! brouard 1: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 2: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
3:
1.46 ! brouard 4: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 5:
6: * ./ (Module): Fixed bug on result:
7:
1.46 ! brouard 8: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
1.43 brouard 9:
10: * imach.c (Module): Fix bug on quitting after result lines!
1.44 brouard 11: (Module): Version 0.99r21
1.43 brouard 12:
1.42 brouard 13: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
14:
15: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
16:
17:
18: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
1.41 brouard 19:
20: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
21:
1.42 brouard 22: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
1.40 brouard 23:
24: * (Module): imach.c Update mle=-3 (for computing Life expectancy
25: and life table from the data without any state)
26:
1.42 brouard 27: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 28:
29: * version.h: Summary: version 0.99.r19
30:
31: * imach.c: Summary: Projection syntax simplified
32: We can now start projections, forward or backward, from the mean date
33: of inteviews up to or down to a number of years of projection:
34: prevforecast=1 yearsfproj=15.3 mobil_average=0
35: or
36: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
37: or
38: prevbackcast=1 yearsbproj=12.3 mobil_average=1
39: or
40: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
41:
1.42 brouard 42: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 43:
44: * imach.c: Summary: doxygen tex bug
45:
1.42 brouard 46: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 47:
48: * imach.c: Summary: There was some wrong lines added
49:
1.42 brouard 50: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 51:
52: * Makefile, imach.c: *** empty log message ***
53:
54: * ChangeLog: Summary: C=
55:
56: * imach.c: Summary: Some updates
57:
58: * imach.c: Summary: Before ncovmax
59:
60: * version.h: *** empty log message ***
61:
62: * imach.c: Summary: 0.99r18 unlimited number of individuals
63: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
64:
1.42 brouard 65: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 66:
67: * imach.c: Summary: Bug for young ages (<-30) will be in r17
68:
1.42 brouard 69: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 70:
71: * Makefile: Summary: 0.99r16
72:
1.42 brouard 73: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 74:
75: * imach.c: Summary: Some bugs fixed
76:
1.42 brouard 77: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 78:
79: * imach.c: Summary: Bug for young ages (<-30) will be in r17
80:
1.42 brouard 81: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 82:
83: * imach.c: Summary: Some bugs fixed
84:
1.42 brouard 85: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 86:
87: * imach.c:
88: Summary: Bug fixed by providing frequencies only for non missing covariates
89:
1.42 brouard 90: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 91:
92: * imach.c: Summary: some minor bugs
93:
1.42 brouard 94: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 95:
96: * README.txt: *** empty log message ***
97:
98: * imach.c: Summary: Some bugs fixed, valgrind tested
99:
1.42 brouard 100: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 101:
102: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
103:
104: * imach.c:
105: Summary: Computing mean and stdeviation of fixed quantitative variables
106:
1.42 brouard 107: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 108:
109: * imach.c: Summary: Some minor bugs fixed
110:
111: * version.h: *** empty log message ***
112:
1.42 brouard 113: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 114:
115: * imach.c: *** empty log message ***
116:
117: * imach.c: Summary: Adding second argument for quitting
118:
1.42 brouard 119: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 120:
121: * Makefile, README.txt, imach.c: Summary: 0.99r15
122: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
123:
1.42 brouard 124: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 125:
126: * imach.c: Summary: temporary working
127:
1.42 brouard 128: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 129:
130: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
131:
1.42 brouard 132: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 133:
134: * imach.c: Summary: BOM files can be read now
135:
1.42 brouard 136: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 137:
138: * imach.c: Summary: Graphs improvements
139:
140: * imach.c: Summary: Saito's color
141:
1.42 brouard 142: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 143:
144: * imach.c: Summary: Version 0.99r14
145:
1.42 brouard 146: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 147:
148: * imach.c: Summary: More documentation on projections
149:
150: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
151:
152: * imach.c: Summary: Some bug with rint
153:
1.42 brouard 154: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 155:
156: * imach.c: *** empty log message ***
157:
1.42 brouard 158: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 159:
160: * imach.c: Summary: Code into subroutine, cleanings
161:
1.42 brouard 162: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 163:
164: * imach.c:
165: Summary: backprojection and confidence intervals of backprevalence
166:
1.42 brouard 167: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 168:
169: * imach.c: Summary: temporary save for backprojection
170:
171: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
172:
1.42 brouard 173: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 174:
175: * imach.c: Summary: imach 0.99r13 Some bugs fixed
176:
177: * imach.c: Summary: Labels in graphs
178:
1.42 brouard 179: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 180:
181: * imach.c: Summary: to save
182:
1.42 brouard 183: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 184:
185: * imach.c: *** empty log message ***
186:
1.42 brouard 187: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 188:
189: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
190:
1.42 brouard 191: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 192:
193: * imach.c: Summary: Gnuplot indexations fixed (humm)
194:
195: * imach.c:
196: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
197:
1.42 brouard 198: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 199:
200: * imach.c: Summary: Version 0.99r12
201: Some cleanings, conformed with updated documentation.
202:
1.42 brouard 203: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 204:
205: * version.h: *** empty log message ***
206:
207: * version.h: Summary:0.99r11
208:
1.42 brouard 209: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 210:
211: * imach.c: Summary: Temp
212:
1.42 brouard 213: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 214:
215: * imach.c: Summary: Temporary
216:
1.42 brouard 217: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 218:
219: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
220:
221: * imach.c: Summary: Fixing data parameter line
222:
1.42 brouard 223: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 224:
225: * imach.c: Summary: 0.99 in progress
226:
1.42 brouard 227: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 228:
229: * imach.c: *** empty log message ***
230:
231: * imach.c: Summary: not working
232:
1.42 brouard 233: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 234:
235: * imach.c: Summary: continue
236:
1.42 brouard 237: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 238:
239: * imach.c: Summary: Starting values from frequencies
240:
241: * imach.c: *** empty log message ***
242:
1.42 brouard 243: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 244:
245: * imach.c: *** empty log message ***
246:
1.42 brouard 247: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 248:
249: * imach.c: Summary: Fixing a lots
250:
1.42 brouard 251: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 252:
253: * imach.c: Summary: gnuplot problem in Back projection to fix
254:
255: * imach.c: Summary: Better
256:
1.42 brouard 257: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 258:
259: * imach.c:
260: Summary: Improvement in Powell output in order to copy and paste
261:
262: * imach.c: Summary: Starting tests of 0.99
263:
264: * imach.c: Summary: to valgrind
265:
1.42 brouard 266: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 267:
268: * imach.c: *** empty log message ***
269:
1.42 brouard 270: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 271:
272: * imach.c: *** empty log message ***
273:
274: * imach.c: Summary: not working
275:
1.42 brouard 276: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 277:
278: * imach.c: Summary: not working
279:
280: * imach.c: Summary: Not working
281:
1.42 brouard 282: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 283:
284: * imach.c: Summary: Completing for func too
285:
1.42 brouard 286: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 287:
288: * imach.c: Summary: Fixing some arrays, still debugging
289:
1.42 brouard 290: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 291:
292: * imach.c:
293: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
294:
1.42 brouard 295: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 296:
297: * imach.c: Summary: temp
298:
299: * imach.c: Summary: saving but not running
300:
1.42 brouard 301: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 302:
303: * imach.c: Summary: Fixes
304:
1.42 brouard 305: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 306:
307: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
308:
309: * setup.iss, Makefile, version.h: *** empty log message ***
310:
311: * imach.c: Summary: temporary
312:
1.42 brouard 313: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 314:
315: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
316:
1.42 brouard 317: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 318:
319: * imach.c: Summary: minor bug
320:
321: * imach.c: Summary: 0.99r2
322:
1.42 brouard 323: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 324:
325: * imach.c: *** empty log message ***
326:
1.42 brouard 327: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 328:
329: * imach.c: Summary: 0.99 Back projections
330:
1.42 brouard 331: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 332:
333: * imach.c: Summary: Experimental backcast
334:
1.42 brouard 335: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 336:
337: * imach.c: Summary: 0.98r4 Warning and status=-2
338:
339: Version 0.98r4 is now:
340: - displaying an error when status is -1, date of interview unknown and date of death known;
341: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
342: Older changes concerning s=-2, dating from 2005 have been supersed.
343:
344: * Makefile: *** empty log message ***
345:
1.42 brouard 346: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 347:
348: * Makefile: *** empty log message ***
349:
350: * imach.c: Summary: 0.98r4 working
351:
352: * Makefile: Summary: linuxrpm added
353:
354: * Makefile: *** empty log message ***
355:
356: * imach.c: Summary: temporary not working
357:
1.42 brouard 358: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 359:
360: * imach.c: Summary: 0.98r4
361:
1.42 brouard 362: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 363:
364: * Makefile: *** empty log message ***
365:
1.42 brouard 366: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 367:
368: * Makefile:
369: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
370:
371: * imach.c: Summary: minor typo
372:
373: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
374:
375: Author: Nicolas Brouard
376:
1.42 brouard 377: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 378:
379: * imach.c: Summary: Start working on projected prevalences
380:
1.42 brouard 381: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 382:
383: * imach.c: Summary: Adding ftolpl parameter
384: Author: N Brouard
385:
386: We had difficulties to get smoothed confidence intervals. It was due
387: to the period prevalence which wasn't computed accurately. The inner
388: parameter ftolpl is now an outer parameter of the .imach parameter
389: file after estepm. If ftolpl is small 1.e-4 and estepm too,
390: computation are long.
391:
392: * version.h: *** empty log message ***
393:
394: * imach.c: Summary: temporary
395:
1.42 brouard 396: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 397:
398: * Makefile: *** empty log message ***
399:
400: * setup.iss.in: Summary: some new subdirs
401:
402: * imach.c: *** empty log message ***
403:
404: * setup.iss.in:
405: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
406:
1.42 brouard 407: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 408:
409: * imach.c: *** empty log message ***
410:
1.42 brouard 411: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 412:
413: * imach.c:
414: Summary: 0.98r3 some clarification for graphs on likelihood contributions
415:
1.42 brouard 416: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 417:
418: * imach.c: Summary: Some new graphs of contribution to likelihood
419:
1.42 brouard 420: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 421:
422: * Makefile:
423: Summary: Version read from version.h, itself read with cmake
424:
425: * imach.c: Summary: looking at better estimation of the hessian
426:
427: Also a better criteria for convergence to the period prevalence And
428: therefore adding the number of years needed to converge. (The
429: prevalence in any alive state shold sum to one
430:
431: * Makefile: *** empty log message ***
432:
1.42 brouard 433: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 434:
435: * imach.c:
436: Summary: Adding some overall graph on contribution to likelihood. Might change
437:
1.42 brouard 438: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 439:
440: * Makefile: *** empty log message ***
441:
442: * imach.c: Summary: 0.98r0
443:
1.46 ! brouard 444: - Some new graphs like survival functions
1.38 brouard 445: - Some bugs fixed like model=1+age+V2.
446:
447: * ChangeLog, Makefile: Summary: 0.98r0
448:
449: * CMakeLists.txt: Summary: Some tests for setup.iss
450:
1.37 brouard 451: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
452:
453: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
454:
1.36 brouard 455: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
456:
457: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
458:
1.35 brouard 459: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
460:
461: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
462:
463: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
464:
465: * imach.c (Module): Merging 1.61 to 1.162
466:
467: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
468:
469: * prevlim.h (Module):
470:
1.34 brouard 471: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
472:
473: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
474: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
475:
1.33 brouard 476: 2010-04-29 brouard <brouard@ined.fr>
477:
478: * imach.c (Module): Checking covariates for more complex models
479: than V1+V2. A lot of change to be done. Unstable.
480:
481: 2010-04-26 brouard <brouard@ined.fr>
482:
483: * imach.c (Module): merging some libgsl code. Fixing computation
484: of likelione (using inter/intrapolation if mle = 0) in order to
485: get same likelihood as if mle=1.
486: Some cleaning of code and comments added.
487:
1.32 brouard 488: 2009-10-29 brouard <brouard@ined.fr>
489:
490: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
491:
1.31 brouard 492: 2006-06-30 Brouard Nicolas <brouard@localhost>
493:
494: * imach.c (Module): Clarifications on computing e.j
495:
1.30 brouard 496: 2006-04-28 Brouard Nicolas <brouard@localhost>
497:
498: * imach.c (Module): Yes the sum of survivors was wrong since
499: imach-114 because nhstepm was no more computed in the age
500: loop. Now we define nhstepma in the age loop.
1.31 brouard 501: (Module): In order to speed up (in case of numerous covariates) we
502: compute health expectancies (without variances) in a first step
503: and then all the health expectancies with variances or standard
504: deviation (needs data from the Hessian matrices) which slows the
505: computation.
506: In the future we should be able to stop the program is only health
507: expectancies and graph are needed without standard deviations.
1.30 brouard 508:
1.29 lievre 509: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
510:
511: * imach.iss (Module):
512:
513: * imach.c (Module): bugs in evsi + population file added in htm output file
514:
515: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
516:
517: * imach.c (Module):
518:
1.27 brouard 519: 2006-03-20 Brouard Nicolas <brouard@localhost>
520:
1.28 brouard 521: * imach.c (Module): <title> changed, corresponds to .htm file
522: name. <head> headers where missing.
523:
1.27 brouard 524: * Makefile (Module): 0.98g
525:
526: * imach.c (Module): Weights can have a decimal point as for
527: English (a comma might work with a correct LC_NUMERIC environment,
528: otherwise the weight is truncated).
529: Modification of warning when the covariates values are not 0 or
530: 1.
531: Version 0.98g
532:
1.24 lievre 533: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
534:
1.26 lievre 535: * imach.c (Module): Comments concerning covariates added
536:
1.25 lievre 537: * noreg-setup.iss (Module): Version 0.98f
538:
1.24 lievre 539: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
540:
541: * imach.c (Module): refinements in the computation of lli if
542: status=-2 in order to have more reliable computation if stepm is
543: not 1 month. Version 0.98f
544:
1.22 brouard 545: 2006-03-15 Brouard Nicolas <brouard@localhost>
546:
547: * imach.c (Module): Bug if status = -2, the loglikelihood was
548: computed as likelihood omitting the logarithm. Version O.98e
549:
1.21 brouard 550: 2006-03-14 Brouard Nicolas <brouard@localhost>
551:
552: * imach.c (Module): varevsij Comments added explaining the second
553: table of variances if popbased=1 .
554: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
555: (Module): Function pstamp added
556: (Module): Version 0.98d
557:
1.20 brouard 558: 2006-03-06 Brouard Nicolas <brouard@localhost>
559:
560: * imach.c (Module): Variance-covariance wrong links and
561: varian-covariance of ej. is needed (Saito).
562:
1.19 brouard 563: 2006-02-27 Brouard Nicolas <brouard@localhost>
564:
565: * imach.c (Module): One freematrix added in mlikeli!
566:
567: 2006-02-26 Brouard Nicolas <brouard@localhost>
568:
569: * imach.c (Module): Some improvements in processing parameter
570: filename with strsep.
571:
572: 2006-02-24 Brouard Nicolas <brouard@localhost>
573:
574: * imach.c (Module): Memory leaks checks with valgrind and:
575: datafile was not closed, some imatrix were not freed and on matrix
576: allocation too.
577:
1.16 lievre 578: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
579:
1.18 lievre 580: * strsep.c (Module): Inclusion because not in mingw32!!!
581:
1.17 lievre 582: * setup.iss.in (Module): IMACHSETUPVERSION added
583:
584: * noreg-setup.iss (Module): added to cvs tree
585:
1.16 lievre 586: * Makefile (Module): IMACHSETUPVERSION added
587:
1.15 brouard 588: 2006-01-30 BROUARD Nicolas <brouard@localhost>
589:
1.23 brouard 590: * Makefile (Module, Module): Latest Makefile
591:
1.15 brouard 592: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
593:
594: 2006-01-27 BROUARD Nicolas <brouard@localhost>
595:
596: * noreg-setup.iss (Module): ADDED
597:
598: 2006-01-24 BROUARD Nicolas <brouard@localhost>
599:
600: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
601:
1.14 brouard 602: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
603:
604: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
605:
606: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
607:
1.12 lievre 608: 2005-09-30 <lievre@PC_00595>
609:
610: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 611: (Module): If the status is missing at the last wave but we know
612: that the person is alive, then we can code his/her status as -2
613: (instead of missing=-1 in earlier versions) and his/her
614: contributions to the likelihood is 1 - Prob of dying from last
615: health status (= 1-p13= p11+p12 in the easiest case of somebody in
616: the healthy state at last known wave). Version is 0.98
1.12 lievre 617:
1.11 brouard 618: 2004-05-20 Brouard Nicolas <brouard@localhost>
619:
620: * imach.c (Repository):
621: Agnes added a direct estimation of mortality (without the need of
622: computing period prevalence and differential mortality). Thus here
623: is version 0.97a which has been distributed to some people at
624: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
625: mortality using covariates is not done today. Estimating direct
626: mortality is a very different process because it doesn't need
627: interpolation because it is easy to get the lx from the force of
628: the mortality mux in the simplest case as for a Gompertz (log mux
629: = a + b*x . But we have been able to incorporate the new code
630: within former imach program (0.96d) without deteriorating too much
631: the understanding of the program.
632:
1.10 brouard 633: 2003-06-25 <brouard@BROUARD>
634:
635: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
636: exist so I changed back to asctime which exists.
637: (Module): Version 0.96b
638:
639: 2003-06-24 <brouard@BROUARD>
640:
641: * imach.c (Module): Some bugs corrected for windows. Also, when
642: mle=-1 a template is output in file "or"mypar.txt with the design
643: of the covariance matrix to be input.
644:
1.9 brouard 645: 2003-06-25 Brouard Nicolas <brouard@homebrou>
646:
647: * imach.c (Repository): Duplicated warning errors corrected.
648: (Repository): Elapsed time after each iteration is now output. It
649: helps to forecast when convergence will be reached. Elapsed time
650: is stamped in powell. We created a new html file for the graphs
651: concerning matrix of covariance. It has extension -cov.htm.
652:
1.8 brouard 653: 2003-06-23 Brouard Nicolas <brouard@homebrou>
654:
655: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
656:
657: 2003-06-18 Brouard Nicolas <brouard@homebrou>
658:
659: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
660:
1.7 brouard 661: 2003-06-17 Brouard Nicolas <brouard@homebrou>
662:
663:
664: * imach.c (Repository): Check when date of death was earlier that
665: current date of interview. It may happen when the death was just
666: prior to the death. In this case, dh was negative and likelihood
667: was wrong (infinity). We still send an "Error" but patch by
668: assuming that the date of death was just one stepm after the
669: interview.
670: (Repository): Because some people have very long ID (first column)
671: we changed int to long in num[] and we added a new lvector for
672: memory allocation. But we also truncated to 8 characters (left
673: truncation)
674:
675: (Repository): No more line truncation errors.
676:
677: 2003-06-14 Brouard Nicolas <brouard@homebrou>
678:
679: * imach.c (Repository): Add of a routine likelione (likelihood
680: only once) which prints on a text file
681: (ilk) the contributions to the likelihood for each
682: individual/wave.
683:
684: 2003-06-13 Brouard Nicolas <brouard@homebrou>
685: * imach.c (Repository): Replace "freqsummary" at a correct
686: place. It differs from routine "prevalence" which may be called
687: many times. Probs is memory consuming and must be used with
688: parcimony.
689:
690: 2003-06-17 <brouard@BROUARD>
691:
692: * timeval.h (Module): Added included file to make use of
693: gettimeofday working on win32 with cygwin.
694:
695: 2003-05-16 Brouard Nicolas <brouard@brouard>
696: * imach.c (Module): Insert of a warning if the delay between two
697: waves is negative.
698:
699: * imach.c (Module):
700:
701: 2003-05-03 <brouard@BROUARD>
702:
703: * imach.c: Some cleaning
704:
705: 2003-03-28 <brouard@BROUARD>
706: * imach.c (Module): In version up to 0.92 likelihood was computed
707: as if date of death was unknown. Death was treated as any other
708: health state: the date of the interview describes the actual state
709: and not the date of a change in health state. The former idea was
710: to consider that at each interview the state was recorded
711: (healthy, disable or death) and IMaCh was corrected; but when we
712: introduced the exact date of death then we should have modified
713: the contribution of an exact death to the likelihood. This new
714: contribution is smaller and very dependent of the step unit
715: stepm. It is no more the probability to die between last interview
716: and month of death but the probability to survive from last
717: interview up to one month before death multiplied by the
718: probability to die within a month. Thanks to Chris
719: Jackson for correcting this bug. Former versions increased
720: mortality artificially. The bad side is that we add another loop
721: which slows down the processing. The difference can be up to 10%
722: lower mortality.
723:
724: 2002-05-30 <brouard@BROUARD>
725: *
726: * imach.c (Module): Add correlation matrix of one-step
727: probabilities and covariance matrix
728:
729:
730:
731:
732:
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