Annotation of imach/src/ChangeLog, revision 1.47
1.47 ! brouard 1: 2022-03-17 Brouard Nicolas <brouard@ined.fr >
! 2:
! 3: * 99r25 Improvements in fixing discrepancies between covariates
! 4: missing in result line but in model.
! 5:
1.46 brouard 6: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 7: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
8:
1.46 brouard 9: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 10:
11: * ./ (Module): Fixed bug on result:
12:
1.46 brouard 13: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
1.43 brouard 14:
15: * imach.c (Module): Fix bug on quitting after result lines!
1.44 brouard 16: (Module): Version 0.99r21
1.43 brouard 17:
1.42 brouard 18: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
19:
20: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
21:
22:
23: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
1.41 brouard 24:
25: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
26:
1.42 brouard 27: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
1.40 brouard 28:
29: * (Module): imach.c Update mle=-3 (for computing Life expectancy
30: and life table from the data without any state)
31:
1.42 brouard 32: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 33:
34: * version.h: Summary: version 0.99.r19
35:
36: * imach.c: Summary: Projection syntax simplified
37: We can now start projections, forward or backward, from the mean date
38: of inteviews up to or down to a number of years of projection:
39: prevforecast=1 yearsfproj=15.3 mobil_average=0
40: or
41: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
42: or
43: prevbackcast=1 yearsbproj=12.3 mobil_average=1
44: or
45: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
46:
1.42 brouard 47: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 48:
49: * imach.c: Summary: doxygen tex bug
50:
1.42 brouard 51: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 52:
53: * imach.c: Summary: There was some wrong lines added
54:
1.42 brouard 55: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 56:
57: * Makefile, imach.c: *** empty log message ***
58:
59: * ChangeLog: Summary: C=
60:
61: * imach.c: Summary: Some updates
62:
63: * imach.c: Summary: Before ncovmax
64:
65: * version.h: *** empty log message ***
66:
67: * imach.c: Summary: 0.99r18 unlimited number of individuals
68: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
69:
1.42 brouard 70: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 71:
72: * imach.c: Summary: Bug for young ages (<-30) will be in r17
73:
1.42 brouard 74: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 75:
76: * Makefile: Summary: 0.99r16
77:
1.42 brouard 78: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 79:
80: * imach.c: Summary: Some bugs fixed
81:
1.42 brouard 82: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 83:
84: * imach.c: Summary: Bug for young ages (<-30) will be in r17
85:
1.42 brouard 86: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 87:
88: * imach.c: Summary: Some bugs fixed
89:
1.42 brouard 90: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 91:
92: * imach.c:
93: Summary: Bug fixed by providing frequencies only for non missing covariates
94:
1.42 brouard 95: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 96:
97: * imach.c: Summary: some minor bugs
98:
1.42 brouard 99: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 100:
101: * README.txt: *** empty log message ***
102:
103: * imach.c: Summary: Some bugs fixed, valgrind tested
104:
1.42 brouard 105: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 106:
107: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
108:
109: * imach.c:
110: Summary: Computing mean and stdeviation of fixed quantitative variables
111:
1.42 brouard 112: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 113:
114: * imach.c: Summary: Some minor bugs fixed
115:
116: * version.h: *** empty log message ***
117:
1.42 brouard 118: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 119:
120: * imach.c: *** empty log message ***
121:
122: * imach.c: Summary: Adding second argument for quitting
123:
1.42 brouard 124: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 125:
126: * Makefile, README.txt, imach.c: Summary: 0.99r15
127: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
128:
1.42 brouard 129: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 130:
131: * imach.c: Summary: temporary working
132:
1.42 brouard 133: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 134:
135: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
136:
1.42 brouard 137: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 138:
139: * imach.c: Summary: BOM files can be read now
140:
1.42 brouard 141: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 142:
143: * imach.c: Summary: Graphs improvements
144:
145: * imach.c: Summary: Saito's color
146:
1.42 brouard 147: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 148:
149: * imach.c: Summary: Version 0.99r14
150:
1.42 brouard 151: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 152:
153: * imach.c: Summary: More documentation on projections
154:
155: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
156:
157: * imach.c: Summary: Some bug with rint
158:
1.42 brouard 159: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 160:
161: * imach.c: *** empty log message ***
162:
1.42 brouard 163: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 164:
165: * imach.c: Summary: Code into subroutine, cleanings
166:
1.42 brouard 167: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 168:
169: * imach.c:
170: Summary: backprojection and confidence intervals of backprevalence
171:
1.42 brouard 172: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 173:
174: * imach.c: Summary: temporary save for backprojection
175:
176: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
177:
1.42 brouard 178: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 179:
180: * imach.c: Summary: imach 0.99r13 Some bugs fixed
181:
182: * imach.c: Summary: Labels in graphs
183:
1.42 brouard 184: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 185:
186: * imach.c: Summary: to save
187:
1.42 brouard 188: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 189:
190: * imach.c: *** empty log message ***
191:
1.42 brouard 192: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 193:
194: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
195:
1.42 brouard 196: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 197:
198: * imach.c: Summary: Gnuplot indexations fixed (humm)
199:
200: * imach.c:
201: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
202:
1.42 brouard 203: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 204:
205: * imach.c: Summary: Version 0.99r12
206: Some cleanings, conformed with updated documentation.
207:
1.42 brouard 208: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 209:
210: * version.h: *** empty log message ***
211:
212: * version.h: Summary:0.99r11
213:
1.42 brouard 214: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 215:
216: * imach.c: Summary: Temp
217:
1.42 brouard 218: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 219:
220: * imach.c: Summary: Temporary
221:
1.42 brouard 222: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 223:
224: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
225:
226: * imach.c: Summary: Fixing data parameter line
227:
1.42 brouard 228: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 229:
230: * imach.c: Summary: 0.99 in progress
231:
1.42 brouard 232: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 233:
234: * imach.c: *** empty log message ***
235:
236: * imach.c: Summary: not working
237:
1.42 brouard 238: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 239:
240: * imach.c: Summary: continue
241:
1.42 brouard 242: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 243:
244: * imach.c: Summary: Starting values from frequencies
245:
246: * imach.c: *** empty log message ***
247:
1.42 brouard 248: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 249:
250: * imach.c: *** empty log message ***
251:
1.42 brouard 252: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 253:
254: * imach.c: Summary: Fixing a lots
255:
1.42 brouard 256: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 257:
258: * imach.c: Summary: gnuplot problem in Back projection to fix
259:
260: * imach.c: Summary: Better
261:
1.42 brouard 262: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 263:
264: * imach.c:
265: Summary: Improvement in Powell output in order to copy and paste
266:
267: * imach.c: Summary: Starting tests of 0.99
268:
269: * imach.c: Summary: to valgrind
270:
1.42 brouard 271: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 272:
273: * imach.c: *** empty log message ***
274:
1.42 brouard 275: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 276:
277: * imach.c: *** empty log message ***
278:
279: * imach.c: Summary: not working
280:
1.42 brouard 281: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 282:
283: * imach.c: Summary: not working
284:
285: * imach.c: Summary: Not working
286:
1.42 brouard 287: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 288:
289: * imach.c: Summary: Completing for func too
290:
1.42 brouard 291: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 292:
293: * imach.c: Summary: Fixing some arrays, still debugging
294:
1.42 brouard 295: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 296:
297: * imach.c:
298: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
299:
1.42 brouard 300: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 301:
302: * imach.c: Summary: temp
303:
304: * imach.c: Summary: saving but not running
305:
1.42 brouard 306: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 307:
308: * imach.c: Summary: Fixes
309:
1.42 brouard 310: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 311:
312: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
313:
314: * setup.iss, Makefile, version.h: *** empty log message ***
315:
316: * imach.c: Summary: temporary
317:
1.42 brouard 318: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 319:
320: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
321:
1.42 brouard 322: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 323:
324: * imach.c: Summary: minor bug
325:
326: * imach.c: Summary: 0.99r2
327:
1.42 brouard 328: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 329:
330: * imach.c: *** empty log message ***
331:
1.42 brouard 332: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 333:
334: * imach.c: Summary: 0.99 Back projections
335:
1.42 brouard 336: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 337:
338: * imach.c: Summary: Experimental backcast
339:
1.42 brouard 340: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 341:
342: * imach.c: Summary: 0.98r4 Warning and status=-2
343:
344: Version 0.98r4 is now:
345: - displaying an error when status is -1, date of interview unknown and date of death known;
346: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
347: Older changes concerning s=-2, dating from 2005 have been supersed.
348:
349: * Makefile: *** empty log message ***
350:
1.42 brouard 351: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 352:
353: * Makefile: *** empty log message ***
354:
355: * imach.c: Summary: 0.98r4 working
356:
357: * Makefile: Summary: linuxrpm added
358:
359: * Makefile: *** empty log message ***
360:
361: * imach.c: Summary: temporary not working
362:
1.42 brouard 363: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 364:
365: * imach.c: Summary: 0.98r4
366:
1.42 brouard 367: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 368:
369: * Makefile: *** empty log message ***
370:
1.42 brouard 371: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 372:
373: * Makefile:
374: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
375:
376: * imach.c: Summary: minor typo
377:
378: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
379:
380: Author: Nicolas Brouard
381:
1.42 brouard 382: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 383:
384: * imach.c: Summary: Start working on projected prevalences
385:
1.42 brouard 386: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 387:
388: * imach.c: Summary: Adding ftolpl parameter
389: Author: N Brouard
390:
391: We had difficulties to get smoothed confidence intervals. It was due
392: to the period prevalence which wasn't computed accurately. The inner
393: parameter ftolpl is now an outer parameter of the .imach parameter
394: file after estepm. If ftolpl is small 1.e-4 and estepm too,
395: computation are long.
396:
397: * version.h: *** empty log message ***
398:
399: * imach.c: Summary: temporary
400:
1.42 brouard 401: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 402:
403: * Makefile: *** empty log message ***
404:
405: * setup.iss.in: Summary: some new subdirs
406:
407: * imach.c: *** empty log message ***
408:
409: * setup.iss.in:
410: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
411:
1.42 brouard 412: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 413:
414: * imach.c: *** empty log message ***
415:
1.42 brouard 416: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 417:
418: * imach.c:
419: Summary: 0.98r3 some clarification for graphs on likelihood contributions
420:
1.42 brouard 421: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 422:
423: * imach.c: Summary: Some new graphs of contribution to likelihood
424:
1.42 brouard 425: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 426:
427: * Makefile:
428: Summary: Version read from version.h, itself read with cmake
429:
430: * imach.c: Summary: looking at better estimation of the hessian
431:
432: Also a better criteria for convergence to the period prevalence And
433: therefore adding the number of years needed to converge. (The
434: prevalence in any alive state shold sum to one
435:
436: * Makefile: *** empty log message ***
437:
1.42 brouard 438: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 439:
440: * imach.c:
441: Summary: Adding some overall graph on contribution to likelihood. Might change
442:
1.42 brouard 443: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 444:
445: * Makefile: *** empty log message ***
446:
447: * imach.c: Summary: 0.98r0
448:
1.46 brouard 449: - Some new graphs like survival functions
1.38 brouard 450: - Some bugs fixed like model=1+age+V2.
451:
452: * ChangeLog, Makefile: Summary: 0.98r0
453:
454: * CMakeLists.txt: Summary: Some tests for setup.iss
455:
1.37 brouard 456: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
457:
458: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
459:
1.36 brouard 460: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
461:
462: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
463:
1.35 brouard 464: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
465:
466: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
467:
468: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
469:
470: * imach.c (Module): Merging 1.61 to 1.162
471:
472: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
473:
474: * prevlim.h (Module):
475:
1.34 brouard 476: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
477:
478: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
479: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
480:
1.33 brouard 481: 2010-04-29 brouard <brouard@ined.fr>
482:
483: * imach.c (Module): Checking covariates for more complex models
484: than V1+V2. A lot of change to be done. Unstable.
485:
486: 2010-04-26 brouard <brouard@ined.fr>
487:
488: * imach.c (Module): merging some libgsl code. Fixing computation
489: of likelione (using inter/intrapolation if mle = 0) in order to
490: get same likelihood as if mle=1.
491: Some cleaning of code and comments added.
492:
1.32 brouard 493: 2009-10-29 brouard <brouard@ined.fr>
494:
495: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
496:
1.31 brouard 497: 2006-06-30 Brouard Nicolas <brouard@localhost>
498:
499: * imach.c (Module): Clarifications on computing e.j
500:
1.30 brouard 501: 2006-04-28 Brouard Nicolas <brouard@localhost>
502:
503: * imach.c (Module): Yes the sum of survivors was wrong since
504: imach-114 because nhstepm was no more computed in the age
505: loop. Now we define nhstepma in the age loop.
1.31 brouard 506: (Module): In order to speed up (in case of numerous covariates) we
507: compute health expectancies (without variances) in a first step
508: and then all the health expectancies with variances or standard
509: deviation (needs data from the Hessian matrices) which slows the
510: computation.
511: In the future we should be able to stop the program is only health
512: expectancies and graph are needed without standard deviations.
1.30 brouard 513:
1.29 lievre 514: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
515:
516: * imach.iss (Module):
517:
518: * imach.c (Module): bugs in evsi + population file added in htm output file
519:
520: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
521:
522: * imach.c (Module):
523:
1.27 brouard 524: 2006-03-20 Brouard Nicolas <brouard@localhost>
525:
1.28 brouard 526: * imach.c (Module): <title> changed, corresponds to .htm file
527: name. <head> headers where missing.
528:
1.27 brouard 529: * Makefile (Module): 0.98g
530:
531: * imach.c (Module): Weights can have a decimal point as for
532: English (a comma might work with a correct LC_NUMERIC environment,
533: otherwise the weight is truncated).
534: Modification of warning when the covariates values are not 0 or
535: 1.
536: Version 0.98g
537:
1.24 lievre 538: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
539:
1.26 lievre 540: * imach.c (Module): Comments concerning covariates added
541:
1.25 lievre 542: * noreg-setup.iss (Module): Version 0.98f
543:
1.24 lievre 544: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
545:
546: * imach.c (Module): refinements in the computation of lli if
547: status=-2 in order to have more reliable computation if stepm is
548: not 1 month. Version 0.98f
549:
1.22 brouard 550: 2006-03-15 Brouard Nicolas <brouard@localhost>
551:
552: * imach.c (Module): Bug if status = -2, the loglikelihood was
553: computed as likelihood omitting the logarithm. Version O.98e
554:
1.21 brouard 555: 2006-03-14 Brouard Nicolas <brouard@localhost>
556:
557: * imach.c (Module): varevsij Comments added explaining the second
558: table of variances if popbased=1 .
559: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
560: (Module): Function pstamp added
561: (Module): Version 0.98d
562:
1.20 brouard 563: 2006-03-06 Brouard Nicolas <brouard@localhost>
564:
565: * imach.c (Module): Variance-covariance wrong links and
566: varian-covariance of ej. is needed (Saito).
567:
1.19 brouard 568: 2006-02-27 Brouard Nicolas <brouard@localhost>
569:
570: * imach.c (Module): One freematrix added in mlikeli!
571:
572: 2006-02-26 Brouard Nicolas <brouard@localhost>
573:
574: * imach.c (Module): Some improvements in processing parameter
575: filename with strsep.
576:
577: 2006-02-24 Brouard Nicolas <brouard@localhost>
578:
579: * imach.c (Module): Memory leaks checks with valgrind and:
580: datafile was not closed, some imatrix were not freed and on matrix
581: allocation too.
582:
1.16 lievre 583: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
584:
1.18 lievre 585: * strsep.c (Module): Inclusion because not in mingw32!!!
586:
1.17 lievre 587: * setup.iss.in (Module): IMACHSETUPVERSION added
588:
589: * noreg-setup.iss (Module): added to cvs tree
590:
1.16 lievre 591: * Makefile (Module): IMACHSETUPVERSION added
592:
1.15 brouard 593: 2006-01-30 BROUARD Nicolas <brouard@localhost>
594:
1.23 brouard 595: * Makefile (Module, Module): Latest Makefile
596:
1.15 brouard 597: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
598:
599: 2006-01-27 BROUARD Nicolas <brouard@localhost>
600:
601: * noreg-setup.iss (Module): ADDED
602:
603: 2006-01-24 BROUARD Nicolas <brouard@localhost>
604:
605: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
606:
1.14 brouard 607: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
608:
609: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
610:
611: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
612:
1.12 lievre 613: 2005-09-30 <lievre@PC_00595>
614:
615: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 616: (Module): If the status is missing at the last wave but we know
617: that the person is alive, then we can code his/her status as -2
618: (instead of missing=-1 in earlier versions) and his/her
619: contributions to the likelihood is 1 - Prob of dying from last
620: health status (= 1-p13= p11+p12 in the easiest case of somebody in
621: the healthy state at last known wave). Version is 0.98
1.12 lievre 622:
1.11 brouard 623: 2004-05-20 Brouard Nicolas <brouard@localhost>
624:
625: * imach.c (Repository):
626: Agnes added a direct estimation of mortality (without the need of
627: computing period prevalence and differential mortality). Thus here
628: is version 0.97a which has been distributed to some people at
629: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
630: mortality using covariates is not done today. Estimating direct
631: mortality is a very different process because it doesn't need
632: interpolation because it is easy to get the lx from the force of
633: the mortality mux in the simplest case as for a Gompertz (log mux
634: = a + b*x . But we have been able to incorporate the new code
635: within former imach program (0.96d) without deteriorating too much
636: the understanding of the program.
637:
1.10 brouard 638: 2003-06-25 <brouard@BROUARD>
639:
640: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
641: exist so I changed back to asctime which exists.
642: (Module): Version 0.96b
643:
644: 2003-06-24 <brouard@BROUARD>
645:
646: * imach.c (Module): Some bugs corrected for windows. Also, when
647: mle=-1 a template is output in file "or"mypar.txt with the design
648: of the covariance matrix to be input.
649:
1.9 brouard 650: 2003-06-25 Brouard Nicolas <brouard@homebrou>
651:
652: * imach.c (Repository): Duplicated warning errors corrected.
653: (Repository): Elapsed time after each iteration is now output. It
654: helps to forecast when convergence will be reached. Elapsed time
655: is stamped in powell. We created a new html file for the graphs
656: concerning matrix of covariance. It has extension -cov.htm.
657:
1.8 brouard 658: 2003-06-23 Brouard Nicolas <brouard@homebrou>
659:
660: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
661:
662: 2003-06-18 Brouard Nicolas <brouard@homebrou>
663:
664: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
665:
1.7 brouard 666: 2003-06-17 Brouard Nicolas <brouard@homebrou>
667:
668:
669: * imach.c (Repository): Check when date of death was earlier that
670: current date of interview. It may happen when the death was just
671: prior to the death. In this case, dh was negative and likelihood
672: was wrong (infinity). We still send an "Error" but patch by
673: assuming that the date of death was just one stepm after the
674: interview.
675: (Repository): Because some people have very long ID (first column)
676: we changed int to long in num[] and we added a new lvector for
677: memory allocation. But we also truncated to 8 characters (left
678: truncation)
679:
680: (Repository): No more line truncation errors.
681:
682: 2003-06-14 Brouard Nicolas <brouard@homebrou>
683:
684: * imach.c (Repository): Add of a routine likelione (likelihood
685: only once) which prints on a text file
686: (ilk) the contributions to the likelihood for each
687: individual/wave.
688:
689: 2003-06-13 Brouard Nicolas <brouard@homebrou>
690: * imach.c (Repository): Replace "freqsummary" at a correct
691: place. It differs from routine "prevalence" which may be called
692: many times. Probs is memory consuming and must be used with
693: parcimony.
694:
695: 2003-06-17 <brouard@BROUARD>
696:
697: * timeval.h (Module): Added included file to make use of
698: gettimeofday working on win32 with cygwin.
699:
700: 2003-05-16 Brouard Nicolas <brouard@brouard>
701: * imach.c (Module): Insert of a warning if the delay between two
702: waves is negative.
703:
704: * imach.c (Module):
705:
706: 2003-05-03 <brouard@BROUARD>
707:
708: * imach.c: Some cleaning
709:
710: 2003-03-28 <brouard@BROUARD>
711: * imach.c (Module): In version up to 0.92 likelihood was computed
712: as if date of death was unknown. Death was treated as any other
713: health state: the date of the interview describes the actual state
714: and not the date of a change in health state. The former idea was
715: to consider that at each interview the state was recorded
716: (healthy, disable or death) and IMaCh was corrected; but when we
717: introduced the exact date of death then we should have modified
718: the contribution of an exact death to the likelihood. This new
719: contribution is smaller and very dependent of the step unit
720: stepm. It is no more the probability to die between last interview
721: and month of death but the probability to survive from last
722: interview up to one month before death multiplied by the
723: probability to die within a month. Thanks to Chris
724: Jackson for correcting this bug. Former versions increased
725: mortality artificially. The bad side is that we add another loop
726: which slows down the processing. The difference can be up to 10%
727: lower mortality.
728:
729: 2002-05-30 <brouard@BROUARD>
730: *
731: * imach.c (Module): Add correlation matrix of one-step
732: probabilities and covariance matrix
733:
734:
735:
736:
737:
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