Annotation of imach/src/ChangeLog, revision 1.48
1.48 ! brouard 1: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Fixed covariates (dummy or quantitative)
! 4: with missing values have never been allowed but are ERRORS and
! 5: program quits. Standard deviations of fixed covariates were
! 6: wrongly computed. Mean and standard deviations of time varying
! 7: covariates are still not computed.
! 8:
! 9: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
1.47 brouard 10:
11: * 99r25 Improvements in fixing discrepancies between covariates
12: missing in result line but in model.
13:
1.46 brouard 14: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 15: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
16:
1.46 brouard 17: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 18:
19: * ./ (Module): Fixed bug on result:
20:
1.46 brouard 21: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
1.43 brouard 22:
23: * imach.c (Module): Fix bug on quitting after result lines!
1.44 brouard 24: (Module): Version 0.99r21
1.43 brouard 25:
1.42 brouard 26: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
27:
28: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
29:
30:
31: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
1.41 brouard 32:
33: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
34:
1.42 brouard 35: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
1.40 brouard 36:
37: * (Module): imach.c Update mle=-3 (for computing Life expectancy
38: and life table from the data without any state)
39:
1.42 brouard 40: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 41:
42: * version.h: Summary: version 0.99.r19
43:
44: * imach.c: Summary: Projection syntax simplified
45: We can now start projections, forward or backward, from the mean date
46: of inteviews up to or down to a number of years of projection:
47: prevforecast=1 yearsfproj=15.3 mobil_average=0
48: or
49: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
50: or
51: prevbackcast=1 yearsbproj=12.3 mobil_average=1
52: or
53: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
54:
1.42 brouard 55: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 56:
57: * imach.c: Summary: doxygen tex bug
58:
1.42 brouard 59: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 60:
61: * imach.c: Summary: There was some wrong lines added
62:
1.42 brouard 63: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 64:
65: * Makefile, imach.c: *** empty log message ***
66:
67: * ChangeLog: Summary: C=
68:
69: * imach.c: Summary: Some updates
70:
71: * imach.c: Summary: Before ncovmax
72:
73: * version.h: *** empty log message ***
74:
75: * imach.c: Summary: 0.99r18 unlimited number of individuals
76: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
77:
1.42 brouard 78: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 79:
80: * imach.c: Summary: Bug for young ages (<-30) will be in r17
81:
1.42 brouard 82: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 83:
84: * Makefile: Summary: 0.99r16
85:
1.42 brouard 86: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 87:
88: * imach.c: Summary: Some bugs fixed
89:
1.42 brouard 90: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 91:
92: * imach.c: Summary: Bug for young ages (<-30) will be in r17
93:
1.42 brouard 94: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 95:
96: * imach.c: Summary: Some bugs fixed
97:
1.42 brouard 98: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 99:
100: * imach.c:
101: Summary: Bug fixed by providing frequencies only for non missing covariates
102:
1.42 brouard 103: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 104:
105: * imach.c: Summary: some minor bugs
106:
1.42 brouard 107: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 108:
109: * README.txt: *** empty log message ***
110:
111: * imach.c: Summary: Some bugs fixed, valgrind tested
112:
1.42 brouard 113: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 114:
115: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
116:
117: * imach.c:
118: Summary: Computing mean and stdeviation of fixed quantitative variables
119:
1.42 brouard 120: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 121:
122: * imach.c: Summary: Some minor bugs fixed
123:
124: * version.h: *** empty log message ***
125:
1.42 brouard 126: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 127:
128: * imach.c: *** empty log message ***
129:
130: * imach.c: Summary: Adding second argument for quitting
131:
1.42 brouard 132: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 133:
134: * Makefile, README.txt, imach.c: Summary: 0.99r15
135: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
136:
1.42 brouard 137: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 138:
139: * imach.c: Summary: temporary working
140:
1.42 brouard 141: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 142:
143: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
144:
1.42 brouard 145: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 146:
147: * imach.c: Summary: BOM files can be read now
148:
1.42 brouard 149: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 150:
151: * imach.c: Summary: Graphs improvements
152:
153: * imach.c: Summary: Saito's color
154:
1.42 brouard 155: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 156:
157: * imach.c: Summary: Version 0.99r14
158:
1.42 brouard 159: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 160:
161: * imach.c: Summary: More documentation on projections
162:
163: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
164:
165: * imach.c: Summary: Some bug with rint
166:
1.42 brouard 167: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 168:
169: * imach.c: *** empty log message ***
170:
1.42 brouard 171: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 172:
173: * imach.c: Summary: Code into subroutine, cleanings
174:
1.42 brouard 175: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 176:
177: * imach.c:
178: Summary: backprojection and confidence intervals of backprevalence
179:
1.42 brouard 180: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 181:
182: * imach.c: Summary: temporary save for backprojection
183:
184: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
185:
1.42 brouard 186: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 187:
188: * imach.c: Summary: imach 0.99r13 Some bugs fixed
189:
190: * imach.c: Summary: Labels in graphs
191:
1.42 brouard 192: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 193:
194: * imach.c: Summary: to save
195:
1.42 brouard 196: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 197:
198: * imach.c: *** empty log message ***
199:
1.42 brouard 200: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 201:
202: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
203:
1.42 brouard 204: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 205:
206: * imach.c: Summary: Gnuplot indexations fixed (humm)
207:
208: * imach.c:
209: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
210:
1.42 brouard 211: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 212:
213: * imach.c: Summary: Version 0.99r12
214: Some cleanings, conformed with updated documentation.
215:
1.42 brouard 216: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 217:
218: * version.h: *** empty log message ***
219:
220: * version.h: Summary:0.99r11
221:
1.42 brouard 222: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 223:
224: * imach.c: Summary: Temp
225:
1.42 brouard 226: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 227:
228: * imach.c: Summary: Temporary
229:
1.42 brouard 230: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 231:
232: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
233:
234: * imach.c: Summary: Fixing data parameter line
235:
1.42 brouard 236: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 237:
238: * imach.c: Summary: 0.99 in progress
239:
1.42 brouard 240: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 241:
242: * imach.c: *** empty log message ***
243:
244: * imach.c: Summary: not working
245:
1.42 brouard 246: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 247:
248: * imach.c: Summary: continue
249:
1.42 brouard 250: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 251:
252: * imach.c: Summary: Starting values from frequencies
253:
254: * imach.c: *** empty log message ***
255:
1.42 brouard 256: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 257:
258: * imach.c: *** empty log message ***
259:
1.42 brouard 260: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 261:
262: * imach.c: Summary: Fixing a lots
263:
1.42 brouard 264: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 265:
266: * imach.c: Summary: gnuplot problem in Back projection to fix
267:
268: * imach.c: Summary: Better
269:
1.42 brouard 270: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 271:
272: * imach.c:
273: Summary: Improvement in Powell output in order to copy and paste
274:
275: * imach.c: Summary: Starting tests of 0.99
276:
277: * imach.c: Summary: to valgrind
278:
1.42 brouard 279: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 280:
281: * imach.c: *** empty log message ***
282:
1.42 brouard 283: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 284:
285: * imach.c: *** empty log message ***
286:
287: * imach.c: Summary: not working
288:
1.42 brouard 289: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 290:
291: * imach.c: Summary: not working
292:
293: * imach.c: Summary: Not working
294:
1.42 brouard 295: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 296:
297: * imach.c: Summary: Completing for func too
298:
1.42 brouard 299: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 300:
301: * imach.c: Summary: Fixing some arrays, still debugging
302:
1.42 brouard 303: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 304:
305: * imach.c:
306: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
307:
1.42 brouard 308: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 309:
310: * imach.c: Summary: temp
311:
312: * imach.c: Summary: saving but not running
313:
1.42 brouard 314: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 315:
316: * imach.c: Summary: Fixes
317:
1.42 brouard 318: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 319:
320: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
321:
322: * setup.iss, Makefile, version.h: *** empty log message ***
323:
324: * imach.c: Summary: temporary
325:
1.42 brouard 326: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 327:
328: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
329:
1.42 brouard 330: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 331:
332: * imach.c: Summary: minor bug
333:
334: * imach.c: Summary: 0.99r2
335:
1.42 brouard 336: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 337:
338: * imach.c: *** empty log message ***
339:
1.42 brouard 340: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 341:
342: * imach.c: Summary: 0.99 Back projections
343:
1.42 brouard 344: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 345:
346: * imach.c: Summary: Experimental backcast
347:
1.42 brouard 348: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 349:
350: * imach.c: Summary: 0.98r4 Warning and status=-2
351:
352: Version 0.98r4 is now:
353: - displaying an error when status is -1, date of interview unknown and date of death known;
354: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
355: Older changes concerning s=-2, dating from 2005 have been supersed.
356:
357: * Makefile: *** empty log message ***
358:
1.42 brouard 359: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 360:
361: * Makefile: *** empty log message ***
362:
363: * imach.c: Summary: 0.98r4 working
364:
365: * Makefile: Summary: linuxrpm added
366:
367: * Makefile: *** empty log message ***
368:
369: * imach.c: Summary: temporary not working
370:
1.42 brouard 371: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 372:
373: * imach.c: Summary: 0.98r4
374:
1.42 brouard 375: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 376:
377: * Makefile: *** empty log message ***
378:
1.42 brouard 379: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 380:
381: * Makefile:
382: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
383:
384: * imach.c: Summary: minor typo
385:
386: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
387:
388: Author: Nicolas Brouard
389:
1.42 brouard 390: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 391:
392: * imach.c: Summary: Start working on projected prevalences
393:
1.42 brouard 394: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 395:
396: * imach.c: Summary: Adding ftolpl parameter
397: Author: N Brouard
398:
399: We had difficulties to get smoothed confidence intervals. It was due
400: to the period prevalence which wasn't computed accurately. The inner
401: parameter ftolpl is now an outer parameter of the .imach parameter
402: file after estepm. If ftolpl is small 1.e-4 and estepm too,
403: computation are long.
404:
405: * version.h: *** empty log message ***
406:
407: * imach.c: Summary: temporary
408:
1.42 brouard 409: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 410:
411: * Makefile: *** empty log message ***
412:
413: * setup.iss.in: Summary: some new subdirs
414:
415: * imach.c: *** empty log message ***
416:
417: * setup.iss.in:
418: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
419:
1.42 brouard 420: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 421:
422: * imach.c: *** empty log message ***
423:
1.42 brouard 424: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 425:
426: * imach.c:
427: Summary: 0.98r3 some clarification for graphs on likelihood contributions
428:
1.42 brouard 429: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 430:
431: * imach.c: Summary: Some new graphs of contribution to likelihood
432:
1.42 brouard 433: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 434:
435: * Makefile:
436: Summary: Version read from version.h, itself read with cmake
437:
438: * imach.c: Summary: looking at better estimation of the hessian
439:
440: Also a better criteria for convergence to the period prevalence And
441: therefore adding the number of years needed to converge. (The
442: prevalence in any alive state shold sum to one
443:
444: * Makefile: *** empty log message ***
445:
1.42 brouard 446: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 447:
448: * imach.c:
449: Summary: Adding some overall graph on contribution to likelihood. Might change
450:
1.42 brouard 451: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 452:
453: * Makefile: *** empty log message ***
454:
455: * imach.c: Summary: 0.98r0
456:
1.46 brouard 457: - Some new graphs like survival functions
1.38 brouard 458: - Some bugs fixed like model=1+age+V2.
459:
460: * ChangeLog, Makefile: Summary: 0.98r0
461:
462: * CMakeLists.txt: Summary: Some tests for setup.iss
463:
1.37 brouard 464: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
465:
466: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
467:
1.36 brouard 468: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
469:
470: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
471:
1.35 brouard 472: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
473:
474: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
475:
476: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
477:
478: * imach.c (Module): Merging 1.61 to 1.162
479:
480: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
481:
482: * prevlim.h (Module):
483:
1.34 brouard 484: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
485:
486: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
487: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
488:
1.33 brouard 489: 2010-04-29 brouard <brouard@ined.fr>
490:
491: * imach.c (Module): Checking covariates for more complex models
492: than V1+V2. A lot of change to be done. Unstable.
493:
494: 2010-04-26 brouard <brouard@ined.fr>
495:
496: * imach.c (Module): merging some libgsl code. Fixing computation
497: of likelione (using inter/intrapolation if mle = 0) in order to
498: get same likelihood as if mle=1.
499: Some cleaning of code and comments added.
500:
1.32 brouard 501: 2009-10-29 brouard <brouard@ined.fr>
502:
503: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
504:
1.31 brouard 505: 2006-06-30 Brouard Nicolas <brouard@localhost>
506:
507: * imach.c (Module): Clarifications on computing e.j
508:
1.30 brouard 509: 2006-04-28 Brouard Nicolas <brouard@localhost>
510:
511: * imach.c (Module): Yes the sum of survivors was wrong since
512: imach-114 because nhstepm was no more computed in the age
513: loop. Now we define nhstepma in the age loop.
1.31 brouard 514: (Module): In order to speed up (in case of numerous covariates) we
515: compute health expectancies (without variances) in a first step
516: and then all the health expectancies with variances or standard
517: deviation (needs data from the Hessian matrices) which slows the
518: computation.
519: In the future we should be able to stop the program is only health
520: expectancies and graph are needed without standard deviations.
1.30 brouard 521:
1.29 lievre 522: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
523:
524: * imach.iss (Module):
525:
526: * imach.c (Module): bugs in evsi + population file added in htm output file
527:
528: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
529:
530: * imach.c (Module):
531:
1.27 brouard 532: 2006-03-20 Brouard Nicolas <brouard@localhost>
533:
1.28 brouard 534: * imach.c (Module): <title> changed, corresponds to .htm file
535: name. <head> headers where missing.
536:
1.27 brouard 537: * Makefile (Module): 0.98g
538:
539: * imach.c (Module): Weights can have a decimal point as for
540: English (a comma might work with a correct LC_NUMERIC environment,
541: otherwise the weight is truncated).
542: Modification of warning when the covariates values are not 0 or
543: 1.
544: Version 0.98g
545:
1.24 lievre 546: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
547:
1.26 lievre 548: * imach.c (Module): Comments concerning covariates added
549:
1.25 lievre 550: * noreg-setup.iss (Module): Version 0.98f
551:
1.24 lievre 552: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
553:
554: * imach.c (Module): refinements in the computation of lli if
555: status=-2 in order to have more reliable computation if stepm is
556: not 1 month. Version 0.98f
557:
1.22 brouard 558: 2006-03-15 Brouard Nicolas <brouard@localhost>
559:
560: * imach.c (Module): Bug if status = -2, the loglikelihood was
561: computed as likelihood omitting the logarithm. Version O.98e
562:
1.21 brouard 563: 2006-03-14 Brouard Nicolas <brouard@localhost>
564:
565: * imach.c (Module): varevsij Comments added explaining the second
566: table of variances if popbased=1 .
567: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
568: (Module): Function pstamp added
569: (Module): Version 0.98d
570:
1.20 brouard 571: 2006-03-06 Brouard Nicolas <brouard@localhost>
572:
573: * imach.c (Module): Variance-covariance wrong links and
574: varian-covariance of ej. is needed (Saito).
575:
1.19 brouard 576: 2006-02-27 Brouard Nicolas <brouard@localhost>
577:
578: * imach.c (Module): One freematrix added in mlikeli!
579:
580: 2006-02-26 Brouard Nicolas <brouard@localhost>
581:
582: * imach.c (Module): Some improvements in processing parameter
583: filename with strsep.
584:
585: 2006-02-24 Brouard Nicolas <brouard@localhost>
586:
587: * imach.c (Module): Memory leaks checks with valgrind and:
588: datafile was not closed, some imatrix were not freed and on matrix
589: allocation too.
590:
1.16 lievre 591: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
592:
1.18 lievre 593: * strsep.c (Module): Inclusion because not in mingw32!!!
594:
1.17 lievre 595: * setup.iss.in (Module): IMACHSETUPVERSION added
596:
597: * noreg-setup.iss (Module): added to cvs tree
598:
1.16 lievre 599: * Makefile (Module): IMACHSETUPVERSION added
600:
1.15 brouard 601: 2006-01-30 BROUARD Nicolas <brouard@localhost>
602:
1.23 brouard 603: * Makefile (Module, Module): Latest Makefile
604:
1.15 brouard 605: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
606:
607: 2006-01-27 BROUARD Nicolas <brouard@localhost>
608:
609: * noreg-setup.iss (Module): ADDED
610:
611: 2006-01-24 BROUARD Nicolas <brouard@localhost>
612:
613: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
614:
1.14 brouard 615: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
616:
617: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
618:
619: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
620:
1.12 lievre 621: 2005-09-30 <lievre@PC_00595>
622:
623: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 624: (Module): If the status is missing at the last wave but we know
625: that the person is alive, then we can code his/her status as -2
626: (instead of missing=-1 in earlier versions) and his/her
627: contributions to the likelihood is 1 - Prob of dying from last
628: health status (= 1-p13= p11+p12 in the easiest case of somebody in
629: the healthy state at last known wave). Version is 0.98
1.12 lievre 630:
1.11 brouard 631: 2004-05-20 Brouard Nicolas <brouard@localhost>
632:
633: * imach.c (Repository):
634: Agnes added a direct estimation of mortality (without the need of
635: computing period prevalence and differential mortality). Thus here
636: is version 0.97a which has been distributed to some people at
637: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
638: mortality using covariates is not done today. Estimating direct
639: mortality is a very different process because it doesn't need
640: interpolation because it is easy to get the lx from the force of
641: the mortality mux in the simplest case as for a Gompertz (log mux
642: = a + b*x . But we have been able to incorporate the new code
643: within former imach program (0.96d) without deteriorating too much
644: the understanding of the program.
645:
1.10 brouard 646: 2003-06-25 <brouard@BROUARD>
647:
648: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
649: exist so I changed back to asctime which exists.
650: (Module): Version 0.96b
651:
652: 2003-06-24 <brouard@BROUARD>
653:
654: * imach.c (Module): Some bugs corrected for windows. Also, when
655: mle=-1 a template is output in file "or"mypar.txt with the design
656: of the covariance matrix to be input.
657:
1.9 brouard 658: 2003-06-25 Brouard Nicolas <brouard@homebrou>
659:
660: * imach.c (Repository): Duplicated warning errors corrected.
661: (Repository): Elapsed time after each iteration is now output. It
662: helps to forecast when convergence will be reached. Elapsed time
663: is stamped in powell. We created a new html file for the graphs
664: concerning matrix of covariance. It has extension -cov.htm.
665:
1.8 brouard 666: 2003-06-23 Brouard Nicolas <brouard@homebrou>
667:
668: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
669:
670: 2003-06-18 Brouard Nicolas <brouard@homebrou>
671:
672: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
673:
1.7 brouard 674: 2003-06-17 Brouard Nicolas <brouard@homebrou>
675:
676:
677: * imach.c (Repository): Check when date of death was earlier that
678: current date of interview. It may happen when the death was just
679: prior to the death. In this case, dh was negative and likelihood
680: was wrong (infinity). We still send an "Error" but patch by
681: assuming that the date of death was just one stepm after the
682: interview.
683: (Repository): Because some people have very long ID (first column)
684: we changed int to long in num[] and we added a new lvector for
685: memory allocation. But we also truncated to 8 characters (left
686: truncation)
687:
688: (Repository): No more line truncation errors.
689:
690: 2003-06-14 Brouard Nicolas <brouard@homebrou>
691:
692: * imach.c (Repository): Add of a routine likelione (likelihood
693: only once) which prints on a text file
694: (ilk) the contributions to the likelihood for each
695: individual/wave.
696:
697: 2003-06-13 Brouard Nicolas <brouard@homebrou>
698: * imach.c (Repository): Replace "freqsummary" at a correct
699: place. It differs from routine "prevalence" which may be called
700: many times. Probs is memory consuming and must be used with
701: parcimony.
702:
703: 2003-06-17 <brouard@BROUARD>
704:
705: * timeval.h (Module): Added included file to make use of
706: gettimeofday working on win32 with cygwin.
707:
708: 2003-05-16 Brouard Nicolas <brouard@brouard>
709: * imach.c (Module): Insert of a warning if the delay between two
710: waves is negative.
711:
712: * imach.c (Module):
713:
714: 2003-05-03 <brouard@BROUARD>
715:
716: * imach.c: Some cleaning
717:
718: 2003-03-28 <brouard@BROUARD>
719: * imach.c (Module): In version up to 0.92 likelihood was computed
720: as if date of death was unknown. Death was treated as any other
721: health state: the date of the interview describes the actual state
722: and not the date of a change in health state. The former idea was
723: to consider that at each interview the state was recorded
724: (healthy, disable or death) and IMaCh was corrected; but when we
725: introduced the exact date of death then we should have modified
726: the contribution of an exact death to the likelihood. This new
727: contribution is smaller and very dependent of the step unit
728: stepm. It is no more the probability to die between last interview
729: and month of death but the probability to survive from last
730: interview up to one month before death multiplied by the
731: probability to die within a month. Thanks to Chris
732: Jackson for correcting this bug. Former versions increased
733: mortality artificially. The bad side is that we add another loop
734: which slows down the processing. The difference can be up to 10%
735: lower mortality.
736:
737: 2002-05-30 <brouard@BROUARD>
738: *
739: * imach.c (Module): Add correlation matrix of one-step
740: probabilities and covariance matrix
741:
742:
743:
744:
745:
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