Annotation of imach/src/ChangeLog, revision 1.49
1.49 ! brouard 1: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
! 4:
1.48 brouard 5: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
6:
7: * imach.c (Module): Fixed covariates (dummy or quantitative)
8: with missing values have never been allowed but are ERRORS and
9: program quits. Standard deviations of fixed covariates were
10: wrongly computed. Mean and standard deviations of time varying
11: covariates are still not computed.
12:
13: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
1.47 brouard 14:
15: * 99r25 Improvements in fixing discrepancies between covariates
16: missing in result line but in model.
17:
1.46 brouard 18: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 19: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
20:
1.46 brouard 21: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 22:
23: * ./ (Module): Fixed bug on result:
24:
1.46 brouard 25: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
1.43 brouard 26:
27: * imach.c (Module): Fix bug on quitting after result lines!
1.44 brouard 28: (Module): Version 0.99r21
1.43 brouard 29:
1.42 brouard 30: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
31:
32: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
33:
34:
35: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
1.41 brouard 36:
37: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
38:
1.42 brouard 39: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
1.40 brouard 40:
41: * (Module): imach.c Update mle=-3 (for computing Life expectancy
42: and life table from the data without any state)
43:
1.42 brouard 44: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 45:
46: * version.h: Summary: version 0.99.r19
47:
48: * imach.c: Summary: Projection syntax simplified
49: We can now start projections, forward or backward, from the mean date
50: of inteviews up to or down to a number of years of projection:
51: prevforecast=1 yearsfproj=15.3 mobil_average=0
52: or
53: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
54: or
55: prevbackcast=1 yearsbproj=12.3 mobil_average=1
56: or
57: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
58:
1.42 brouard 59: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 60:
61: * imach.c: Summary: doxygen tex bug
62:
1.42 brouard 63: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 64:
65: * imach.c: Summary: There was some wrong lines added
66:
1.42 brouard 67: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 68:
69: * Makefile, imach.c: *** empty log message ***
70:
71: * ChangeLog: Summary: C=
72:
73: * imach.c: Summary: Some updates
74:
75: * imach.c: Summary: Before ncovmax
76:
77: * version.h: *** empty log message ***
78:
79: * imach.c: Summary: 0.99r18 unlimited number of individuals
80: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
81:
1.42 brouard 82: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 83:
84: * imach.c: Summary: Bug for young ages (<-30) will be in r17
85:
1.42 brouard 86: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 87:
88: * Makefile: Summary: 0.99r16
89:
1.42 brouard 90: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 91:
92: * imach.c: Summary: Some bugs fixed
93:
1.42 brouard 94: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 95:
96: * imach.c: Summary: Bug for young ages (<-30) will be in r17
97:
1.42 brouard 98: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 99:
100: * imach.c: Summary: Some bugs fixed
101:
1.42 brouard 102: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 103:
104: * imach.c:
105: Summary: Bug fixed by providing frequencies only for non missing covariates
106:
1.42 brouard 107: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 108:
109: * imach.c: Summary: some minor bugs
110:
1.42 brouard 111: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 112:
113: * README.txt: *** empty log message ***
114:
115: * imach.c: Summary: Some bugs fixed, valgrind tested
116:
1.42 brouard 117: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 118:
119: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
120:
121: * imach.c:
122: Summary: Computing mean and stdeviation of fixed quantitative variables
123:
1.42 brouard 124: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 125:
126: * imach.c: Summary: Some minor bugs fixed
127:
128: * version.h: *** empty log message ***
129:
1.42 brouard 130: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 131:
132: * imach.c: *** empty log message ***
133:
134: * imach.c: Summary: Adding second argument for quitting
135:
1.42 brouard 136: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 137:
138: * Makefile, README.txt, imach.c: Summary: 0.99r15
139: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
140:
1.42 brouard 141: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 142:
143: * imach.c: Summary: temporary working
144:
1.42 brouard 145: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 146:
147: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
148:
1.42 brouard 149: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 150:
151: * imach.c: Summary: BOM files can be read now
152:
1.42 brouard 153: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 154:
155: * imach.c: Summary: Graphs improvements
156:
157: * imach.c: Summary: Saito's color
158:
1.42 brouard 159: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 160:
161: * imach.c: Summary: Version 0.99r14
162:
1.42 brouard 163: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 164:
165: * imach.c: Summary: More documentation on projections
166:
167: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
168:
169: * imach.c: Summary: Some bug with rint
170:
1.42 brouard 171: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 172:
173: * imach.c: *** empty log message ***
174:
1.42 brouard 175: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 176:
177: * imach.c: Summary: Code into subroutine, cleanings
178:
1.42 brouard 179: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 180:
181: * imach.c:
182: Summary: backprojection and confidence intervals of backprevalence
183:
1.42 brouard 184: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 185:
186: * imach.c: Summary: temporary save for backprojection
187:
188: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
189:
1.42 brouard 190: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 191:
192: * imach.c: Summary: imach 0.99r13 Some bugs fixed
193:
194: * imach.c: Summary: Labels in graphs
195:
1.42 brouard 196: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 197:
198: * imach.c: Summary: to save
199:
1.42 brouard 200: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 201:
202: * imach.c: *** empty log message ***
203:
1.42 brouard 204: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 205:
206: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
207:
1.42 brouard 208: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 209:
210: * imach.c: Summary: Gnuplot indexations fixed (humm)
211:
212: * imach.c:
213: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
214:
1.42 brouard 215: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 216:
217: * imach.c: Summary: Version 0.99r12
218: Some cleanings, conformed with updated documentation.
219:
1.42 brouard 220: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 221:
222: * version.h: *** empty log message ***
223:
224: * version.h: Summary:0.99r11
225:
1.42 brouard 226: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 227:
228: * imach.c: Summary: Temp
229:
1.42 brouard 230: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 231:
232: * imach.c: Summary: Temporary
233:
1.42 brouard 234: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 235:
236: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
237:
238: * imach.c: Summary: Fixing data parameter line
239:
1.42 brouard 240: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 241:
242: * imach.c: Summary: 0.99 in progress
243:
1.42 brouard 244: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 245:
246: * imach.c: *** empty log message ***
247:
248: * imach.c: Summary: not working
249:
1.42 brouard 250: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 251:
252: * imach.c: Summary: continue
253:
1.42 brouard 254: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 255:
256: * imach.c: Summary: Starting values from frequencies
257:
258: * imach.c: *** empty log message ***
259:
1.42 brouard 260: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 261:
262: * imach.c: *** empty log message ***
263:
1.42 brouard 264: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 265:
266: * imach.c: Summary: Fixing a lots
267:
1.42 brouard 268: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 269:
270: * imach.c: Summary: gnuplot problem in Back projection to fix
271:
272: * imach.c: Summary: Better
273:
1.42 brouard 274: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 275:
276: * imach.c:
277: Summary: Improvement in Powell output in order to copy and paste
278:
279: * imach.c: Summary: Starting tests of 0.99
280:
281: * imach.c: Summary: to valgrind
282:
1.42 brouard 283: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 284:
285: * imach.c: *** empty log message ***
286:
1.42 brouard 287: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 288:
289: * imach.c: *** empty log message ***
290:
291: * imach.c: Summary: not working
292:
1.42 brouard 293: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 294:
295: * imach.c: Summary: not working
296:
297: * imach.c: Summary: Not working
298:
1.42 brouard 299: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 300:
301: * imach.c: Summary: Completing for func too
302:
1.42 brouard 303: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 304:
305: * imach.c: Summary: Fixing some arrays, still debugging
306:
1.42 brouard 307: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 308:
309: * imach.c:
310: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
311:
1.42 brouard 312: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 313:
314: * imach.c: Summary: temp
315:
316: * imach.c: Summary: saving but not running
317:
1.42 brouard 318: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 319:
320: * imach.c: Summary: Fixes
321:
1.42 brouard 322: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 323:
324: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
325:
326: * setup.iss, Makefile, version.h: *** empty log message ***
327:
328: * imach.c: Summary: temporary
329:
1.42 brouard 330: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 331:
332: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
333:
1.42 brouard 334: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 335:
336: * imach.c: Summary: minor bug
337:
338: * imach.c: Summary: 0.99r2
339:
1.42 brouard 340: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 341:
342: * imach.c: *** empty log message ***
343:
1.42 brouard 344: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 345:
346: * imach.c: Summary: 0.99 Back projections
347:
1.42 brouard 348: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 349:
350: * imach.c: Summary: Experimental backcast
351:
1.42 brouard 352: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 353:
354: * imach.c: Summary: 0.98r4 Warning and status=-2
355:
356: Version 0.98r4 is now:
357: - displaying an error when status is -1, date of interview unknown and date of death known;
358: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
359: Older changes concerning s=-2, dating from 2005 have been supersed.
360:
361: * Makefile: *** empty log message ***
362:
1.42 brouard 363: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 364:
365: * Makefile: *** empty log message ***
366:
367: * imach.c: Summary: 0.98r4 working
368:
369: * Makefile: Summary: linuxrpm added
370:
371: * Makefile: *** empty log message ***
372:
373: * imach.c: Summary: temporary not working
374:
1.42 brouard 375: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 376:
377: * imach.c: Summary: 0.98r4
378:
1.42 brouard 379: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 380:
381: * Makefile: *** empty log message ***
382:
1.42 brouard 383: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 384:
385: * Makefile:
386: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
387:
388: * imach.c: Summary: minor typo
389:
390: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
391:
392: Author: Nicolas Brouard
393:
1.42 brouard 394: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 395:
396: * imach.c: Summary: Start working on projected prevalences
397:
1.42 brouard 398: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 399:
400: * imach.c: Summary: Adding ftolpl parameter
401: Author: N Brouard
402:
403: We had difficulties to get smoothed confidence intervals. It was due
404: to the period prevalence which wasn't computed accurately. The inner
405: parameter ftolpl is now an outer parameter of the .imach parameter
406: file after estepm. If ftolpl is small 1.e-4 and estepm too,
407: computation are long.
408:
409: * version.h: *** empty log message ***
410:
411: * imach.c: Summary: temporary
412:
1.42 brouard 413: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 414:
415: * Makefile: *** empty log message ***
416:
417: * setup.iss.in: Summary: some new subdirs
418:
419: * imach.c: *** empty log message ***
420:
421: * setup.iss.in:
422: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
423:
1.42 brouard 424: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 425:
426: * imach.c: *** empty log message ***
427:
1.42 brouard 428: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 429:
430: * imach.c:
431: Summary: 0.98r3 some clarification for graphs on likelihood contributions
432:
1.42 brouard 433: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 434:
435: * imach.c: Summary: Some new graphs of contribution to likelihood
436:
1.42 brouard 437: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 438:
439: * Makefile:
440: Summary: Version read from version.h, itself read with cmake
441:
442: * imach.c: Summary: looking at better estimation of the hessian
443:
444: Also a better criteria for convergence to the period prevalence And
445: therefore adding the number of years needed to converge. (The
446: prevalence in any alive state shold sum to one
447:
448: * Makefile: *** empty log message ***
449:
1.42 brouard 450: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 451:
452: * imach.c:
453: Summary: Adding some overall graph on contribution to likelihood. Might change
454:
1.42 brouard 455: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 456:
457: * Makefile: *** empty log message ***
458:
459: * imach.c: Summary: 0.98r0
460:
1.46 brouard 461: - Some new graphs like survival functions
1.38 brouard 462: - Some bugs fixed like model=1+age+V2.
463:
464: * ChangeLog, Makefile: Summary: 0.98r0
465:
466: * CMakeLists.txt: Summary: Some tests for setup.iss
467:
1.37 brouard 468: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
469:
470: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
471:
1.36 brouard 472: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
473:
474: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
475:
1.35 brouard 476: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
477:
478: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
479:
480: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
481:
482: * imach.c (Module): Merging 1.61 to 1.162
483:
484: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
485:
486: * prevlim.h (Module):
487:
1.34 brouard 488: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
489:
490: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
491: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
492:
1.33 brouard 493: 2010-04-29 brouard <brouard@ined.fr>
494:
495: * imach.c (Module): Checking covariates for more complex models
496: than V1+V2. A lot of change to be done. Unstable.
497:
498: 2010-04-26 brouard <brouard@ined.fr>
499:
500: * imach.c (Module): merging some libgsl code. Fixing computation
501: of likelione (using inter/intrapolation if mle = 0) in order to
502: get same likelihood as if mle=1.
503: Some cleaning of code and comments added.
504:
1.32 brouard 505: 2009-10-29 brouard <brouard@ined.fr>
506:
507: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
508:
1.31 brouard 509: 2006-06-30 Brouard Nicolas <brouard@localhost>
510:
511: * imach.c (Module): Clarifications on computing e.j
512:
1.30 brouard 513: 2006-04-28 Brouard Nicolas <brouard@localhost>
514:
515: * imach.c (Module): Yes the sum of survivors was wrong since
516: imach-114 because nhstepm was no more computed in the age
517: loop. Now we define nhstepma in the age loop.
1.31 brouard 518: (Module): In order to speed up (in case of numerous covariates) we
519: compute health expectancies (without variances) in a first step
520: and then all the health expectancies with variances or standard
521: deviation (needs data from the Hessian matrices) which slows the
522: computation.
523: In the future we should be able to stop the program is only health
524: expectancies and graph are needed without standard deviations.
1.30 brouard 525:
1.29 lievre 526: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
527:
528: * imach.iss (Module):
529:
530: * imach.c (Module): bugs in evsi + population file added in htm output file
531:
532: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
533:
534: * imach.c (Module):
535:
1.27 brouard 536: 2006-03-20 Brouard Nicolas <brouard@localhost>
537:
1.28 brouard 538: * imach.c (Module): <title> changed, corresponds to .htm file
539: name. <head> headers where missing.
540:
1.27 brouard 541: * Makefile (Module): 0.98g
542:
543: * imach.c (Module): Weights can have a decimal point as for
544: English (a comma might work with a correct LC_NUMERIC environment,
545: otherwise the weight is truncated).
546: Modification of warning when the covariates values are not 0 or
547: 1.
548: Version 0.98g
549:
1.24 lievre 550: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
551:
1.26 lievre 552: * imach.c (Module): Comments concerning covariates added
553:
1.25 lievre 554: * noreg-setup.iss (Module): Version 0.98f
555:
1.24 lievre 556: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
557:
558: * imach.c (Module): refinements in the computation of lli if
559: status=-2 in order to have more reliable computation if stepm is
560: not 1 month. Version 0.98f
561:
1.22 brouard 562: 2006-03-15 Brouard Nicolas <brouard@localhost>
563:
564: * imach.c (Module): Bug if status = -2, the loglikelihood was
565: computed as likelihood omitting the logarithm. Version O.98e
566:
1.21 brouard 567: 2006-03-14 Brouard Nicolas <brouard@localhost>
568:
569: * imach.c (Module): varevsij Comments added explaining the second
570: table of variances if popbased=1 .
571: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
572: (Module): Function pstamp added
573: (Module): Version 0.98d
574:
1.20 brouard 575: 2006-03-06 Brouard Nicolas <brouard@localhost>
576:
577: * imach.c (Module): Variance-covariance wrong links and
578: varian-covariance of ej. is needed (Saito).
579:
1.19 brouard 580: 2006-02-27 Brouard Nicolas <brouard@localhost>
581:
582: * imach.c (Module): One freematrix added in mlikeli!
583:
584: 2006-02-26 Brouard Nicolas <brouard@localhost>
585:
586: * imach.c (Module): Some improvements in processing parameter
587: filename with strsep.
588:
589: 2006-02-24 Brouard Nicolas <brouard@localhost>
590:
591: * imach.c (Module): Memory leaks checks with valgrind and:
592: datafile was not closed, some imatrix were not freed and on matrix
593: allocation too.
594:
1.16 lievre 595: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
596:
1.18 lievre 597: * strsep.c (Module): Inclusion because not in mingw32!!!
598:
1.17 lievre 599: * setup.iss.in (Module): IMACHSETUPVERSION added
600:
601: * noreg-setup.iss (Module): added to cvs tree
602:
1.16 lievre 603: * Makefile (Module): IMACHSETUPVERSION added
604:
1.15 brouard 605: 2006-01-30 BROUARD Nicolas <brouard@localhost>
606:
1.23 brouard 607: * Makefile (Module, Module): Latest Makefile
608:
1.15 brouard 609: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
610:
611: 2006-01-27 BROUARD Nicolas <brouard@localhost>
612:
613: * noreg-setup.iss (Module): ADDED
614:
615: 2006-01-24 BROUARD Nicolas <brouard@localhost>
616:
617: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
618:
1.14 brouard 619: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
620:
621: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
622:
623: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
624:
1.12 lievre 625: 2005-09-30 <lievre@PC_00595>
626:
627: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 628: (Module): If the status is missing at the last wave but we know
629: that the person is alive, then we can code his/her status as -2
630: (instead of missing=-1 in earlier versions) and his/her
631: contributions to the likelihood is 1 - Prob of dying from last
632: health status (= 1-p13= p11+p12 in the easiest case of somebody in
633: the healthy state at last known wave). Version is 0.98
1.12 lievre 634:
1.11 brouard 635: 2004-05-20 Brouard Nicolas <brouard@localhost>
636:
637: * imach.c (Repository):
638: Agnes added a direct estimation of mortality (without the need of
639: computing period prevalence and differential mortality). Thus here
640: is version 0.97a which has been distributed to some people at
641: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
642: mortality using covariates is not done today. Estimating direct
643: mortality is a very different process because it doesn't need
644: interpolation because it is easy to get the lx from the force of
645: the mortality mux in the simplest case as for a Gompertz (log mux
646: = a + b*x . But we have been able to incorporate the new code
647: within former imach program (0.96d) without deteriorating too much
648: the understanding of the program.
649:
1.10 brouard 650: 2003-06-25 <brouard@BROUARD>
651:
652: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
653: exist so I changed back to asctime which exists.
654: (Module): Version 0.96b
655:
656: 2003-06-24 <brouard@BROUARD>
657:
658: * imach.c (Module): Some bugs corrected for windows. Also, when
659: mle=-1 a template is output in file "or"mypar.txt with the design
660: of the covariance matrix to be input.
661:
1.9 brouard 662: 2003-06-25 Brouard Nicolas <brouard@homebrou>
663:
664: * imach.c (Repository): Duplicated warning errors corrected.
665: (Repository): Elapsed time after each iteration is now output. It
666: helps to forecast when convergence will be reached. Elapsed time
667: is stamped in powell. We created a new html file for the graphs
668: concerning matrix of covariance. It has extension -cov.htm.
669:
1.8 brouard 670: 2003-06-23 Brouard Nicolas <brouard@homebrou>
671:
672: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
673:
674: 2003-06-18 Brouard Nicolas <brouard@homebrou>
675:
676: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
677:
1.7 brouard 678: 2003-06-17 Brouard Nicolas <brouard@homebrou>
679:
680:
681: * imach.c (Repository): Check when date of death was earlier that
682: current date of interview. It may happen when the death was just
683: prior to the death. In this case, dh was negative and likelihood
684: was wrong (infinity). We still send an "Error" but patch by
685: assuming that the date of death was just one stepm after the
686: interview.
687: (Repository): Because some people have very long ID (first column)
688: we changed int to long in num[] and we added a new lvector for
689: memory allocation. But we also truncated to 8 characters (left
690: truncation)
691:
692: (Repository): No more line truncation errors.
693:
694: 2003-06-14 Brouard Nicolas <brouard@homebrou>
695:
696: * imach.c (Repository): Add of a routine likelione (likelihood
697: only once) which prints on a text file
698: (ilk) the contributions to the likelihood for each
699: individual/wave.
700:
701: 2003-06-13 Brouard Nicolas <brouard@homebrou>
702: * imach.c (Repository): Replace "freqsummary" at a correct
703: place. It differs from routine "prevalence" which may be called
704: many times. Probs is memory consuming and must be used with
705: parcimony.
706:
707: 2003-06-17 <brouard@BROUARD>
708:
709: * timeval.h (Module): Added included file to make use of
710: gettimeofday working on win32 with cygwin.
711:
712: 2003-05-16 Brouard Nicolas <brouard@brouard>
713: * imach.c (Module): Insert of a warning if the delay between two
714: waves is negative.
715:
716: * imach.c (Module):
717:
718: 2003-05-03 <brouard@BROUARD>
719:
720: * imach.c: Some cleaning
721:
722: 2003-03-28 <brouard@BROUARD>
723: * imach.c (Module): In version up to 0.92 likelihood was computed
724: as if date of death was unknown. Death was treated as any other
725: health state: the date of the interview describes the actual state
726: and not the date of a change in health state. The former idea was
727: to consider that at each interview the state was recorded
728: (healthy, disable or death) and IMaCh was corrected; but when we
729: introduced the exact date of death then we should have modified
730: the contribution of an exact death to the likelihood. This new
731: contribution is smaller and very dependent of the step unit
732: stepm. It is no more the probability to die between last interview
733: and month of death but the probability to survive from last
734: interview up to one month before death multiplied by the
735: probability to die within a month. Thanks to Chris
736: Jackson for correcting this bug. Former versions increased
737: mortality artificially. The bad side is that we add another loop
738: which slows down the processing. The difference can be up to 10%
739: lower mortality.
740:
741: 2002-05-30 <brouard@BROUARD>
742: *
743: * imach.c (Module): Add correlation matrix of one-step
744: probabilities and covariance matrix
745:
746:
747:
748:
749:
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