Annotation of imach/src/ChangeLog, revision 1.52
1.52 ! brouard 1: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
! 2:
! 3: * imach.c: With products of covariates (age or dummies or
! 4: quantitatives), estimates of parameters were good but when
! 5: estimating variances the positions of newly created covariates
! 6: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
! 7:
1.51 brouard 8: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
9:
10: * imach.c (Module): Some attempts to find a bug of wrong estimates
11: of confidencce intervals with product in the equation modelC
12:
13: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
14:
15: * imach.c (Module): Some minor improvements
16:
1.50 brouard 17: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
18:
19: * imach.c (Module): Adding link to text data files
20:
1.49 brouard 21: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
22:
23: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
24:
1.48 brouard 25: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
26:
27: * imach.c (Module): Fixed covariates (dummy or quantitative)
28: with missing values have never been allowed but are ERRORS and
29: program quits. Standard deviations of fixed covariates were
30: wrongly computed. Mean and standard deviations of time varying
31: covariates are still not computed.
32:
33: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
1.47 brouard 34:
35: * 99r25 Improvements in fixing discrepancies between covariates
36: missing in result line but in model.
37:
1.46 brouard 38: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 39: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
40:
1.46 brouard 41: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 42:
43: * ./ (Module): Fixed bug on result:
44:
1.46 brouard 45: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
1.43 brouard 46:
47: * imach.c (Module): Fix bug on quitting after result lines!
1.44 brouard 48: (Module): Version 0.99r21
1.43 brouard 49:
1.42 brouard 50: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
51:
52: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
53:
54:
55: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
1.41 brouard 56:
57: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
58:
1.42 brouard 59: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
1.40 brouard 60:
61: * (Module): imach.c Update mle=-3 (for computing Life expectancy
62: and life table from the data without any state)
63:
1.42 brouard 64: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 65:
66: * version.h: Summary: version 0.99.r19
67:
68: * imach.c: Summary: Projection syntax simplified
69: We can now start projections, forward or backward, from the mean date
70: of inteviews up to or down to a number of years of projection:
71: prevforecast=1 yearsfproj=15.3 mobil_average=0
72: or
73: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
74: or
75: prevbackcast=1 yearsbproj=12.3 mobil_average=1
76: or
77: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
78:
1.42 brouard 79: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 80:
81: * imach.c: Summary: doxygen tex bug
82:
1.42 brouard 83: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 84:
85: * imach.c: Summary: There was some wrong lines added
86:
1.42 brouard 87: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 88:
89: * Makefile, imach.c: *** empty log message ***
90:
91: * ChangeLog: Summary: C=
92:
93: * imach.c: Summary: Some updates
94:
95: * imach.c: Summary: Before ncovmax
96:
97: * version.h: *** empty log message ***
98:
99: * imach.c: Summary: 0.99r18 unlimited number of individuals
100: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
101:
1.42 brouard 102: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 103:
104: * imach.c: Summary: Bug for young ages (<-30) will be in r17
105:
1.42 brouard 106: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 107:
108: * Makefile: Summary: 0.99r16
109:
1.42 brouard 110: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 111:
112: * imach.c: Summary: Some bugs fixed
113:
1.42 brouard 114: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 115:
116: * imach.c: Summary: Bug for young ages (<-30) will be in r17
117:
1.42 brouard 118: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 119:
120: * imach.c: Summary: Some bugs fixed
121:
1.42 brouard 122: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 123:
124: * imach.c:
125: Summary: Bug fixed by providing frequencies only for non missing covariates
126:
1.42 brouard 127: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 128:
129: * imach.c: Summary: some minor bugs
130:
1.42 brouard 131: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 132:
133: * README.txt: *** empty log message ***
134:
135: * imach.c: Summary: Some bugs fixed, valgrind tested
136:
1.42 brouard 137: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 138:
139: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
140:
141: * imach.c:
142: Summary: Computing mean and stdeviation of fixed quantitative variables
143:
1.42 brouard 144: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 145:
146: * imach.c: Summary: Some minor bugs fixed
147:
148: * version.h: *** empty log message ***
149:
1.42 brouard 150: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 151:
152: * imach.c: *** empty log message ***
153:
154: * imach.c: Summary: Adding second argument for quitting
155:
1.42 brouard 156: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 157:
158: * Makefile, README.txt, imach.c: Summary: 0.99r15
159: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
160:
1.42 brouard 161: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 162:
163: * imach.c: Summary: temporary working
164:
1.42 brouard 165: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 166:
167: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
168:
1.42 brouard 169: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 170:
171: * imach.c: Summary: BOM files can be read now
172:
1.42 brouard 173: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 174:
175: * imach.c: Summary: Graphs improvements
176:
177: * imach.c: Summary: Saito's color
178:
1.42 brouard 179: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 180:
181: * imach.c: Summary: Version 0.99r14
182:
1.42 brouard 183: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 184:
185: * imach.c: Summary: More documentation on projections
186:
187: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
188:
189: * imach.c: Summary: Some bug with rint
190:
1.42 brouard 191: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 192:
193: * imach.c: *** empty log message ***
194:
1.42 brouard 195: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 196:
197: * imach.c: Summary: Code into subroutine, cleanings
198:
1.42 brouard 199: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 200:
201: * imach.c:
202: Summary: backprojection and confidence intervals of backprevalence
203:
1.42 brouard 204: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 205:
206: * imach.c: Summary: temporary save for backprojection
207:
208: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
209:
1.42 brouard 210: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 211:
212: * imach.c: Summary: imach 0.99r13 Some bugs fixed
213:
214: * imach.c: Summary: Labels in graphs
215:
1.42 brouard 216: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 217:
218: * imach.c: Summary: to save
219:
1.42 brouard 220: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 221:
222: * imach.c: *** empty log message ***
223:
1.42 brouard 224: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 225:
226: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
227:
1.42 brouard 228: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 229:
230: * imach.c: Summary: Gnuplot indexations fixed (humm)
231:
232: * imach.c:
233: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
234:
1.42 brouard 235: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 236:
237: * imach.c: Summary: Version 0.99r12
238: Some cleanings, conformed with updated documentation.
239:
1.42 brouard 240: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 241:
242: * version.h: *** empty log message ***
243:
244: * version.h: Summary:0.99r11
245:
1.42 brouard 246: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 247:
248: * imach.c: Summary: Temp
249:
1.42 brouard 250: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 251:
252: * imach.c: Summary: Temporary
253:
1.42 brouard 254: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 255:
256: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
257:
258: * imach.c: Summary: Fixing data parameter line
259:
1.42 brouard 260: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 261:
262: * imach.c: Summary: 0.99 in progress
263:
1.42 brouard 264: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 265:
266: * imach.c: *** empty log message ***
267:
268: * imach.c: Summary: not working
269:
1.42 brouard 270: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 271:
272: * imach.c: Summary: continue
273:
1.42 brouard 274: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 275:
276: * imach.c: Summary: Starting values from frequencies
277:
278: * imach.c: *** empty log message ***
279:
1.42 brouard 280: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 281:
282: * imach.c: *** empty log message ***
283:
1.42 brouard 284: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 285:
286: * imach.c: Summary: Fixing a lots
287:
1.42 brouard 288: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 289:
290: * imach.c: Summary: gnuplot problem in Back projection to fix
291:
292: * imach.c: Summary: Better
293:
1.42 brouard 294: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 295:
296: * imach.c:
297: Summary: Improvement in Powell output in order to copy and paste
298:
299: * imach.c: Summary: Starting tests of 0.99
300:
301: * imach.c: Summary: to valgrind
302:
1.42 brouard 303: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 304:
305: * imach.c: *** empty log message ***
306:
1.42 brouard 307: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 308:
309: * imach.c: *** empty log message ***
310:
311: * imach.c: Summary: not working
312:
1.42 brouard 313: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 314:
315: * imach.c: Summary: not working
316:
317: * imach.c: Summary: Not working
318:
1.42 brouard 319: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 320:
321: * imach.c: Summary: Completing for func too
322:
1.42 brouard 323: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 324:
325: * imach.c: Summary: Fixing some arrays, still debugging
326:
1.42 brouard 327: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 328:
329: * imach.c:
330: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
331:
1.42 brouard 332: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 333:
334: * imach.c: Summary: temp
335:
336: * imach.c: Summary: saving but not running
337:
1.42 brouard 338: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 339:
340: * imach.c: Summary: Fixes
341:
1.42 brouard 342: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 343:
344: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
345:
346: * setup.iss, Makefile, version.h: *** empty log message ***
347:
348: * imach.c: Summary: temporary
349:
1.42 brouard 350: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 351:
352: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
353:
1.42 brouard 354: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 355:
356: * imach.c: Summary: minor bug
357:
358: * imach.c: Summary: 0.99r2
359:
1.42 brouard 360: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 361:
362: * imach.c: *** empty log message ***
363:
1.42 brouard 364: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 365:
366: * imach.c: Summary: 0.99 Back projections
367:
1.42 brouard 368: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 369:
370: * imach.c: Summary: Experimental backcast
371:
1.42 brouard 372: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 373:
374: * imach.c: Summary: 0.98r4 Warning and status=-2
375:
376: Version 0.98r4 is now:
377: - displaying an error when status is -1, date of interview unknown and date of death known;
378: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
379: Older changes concerning s=-2, dating from 2005 have been supersed.
380:
381: * Makefile: *** empty log message ***
382:
1.42 brouard 383: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 384:
385: * Makefile: *** empty log message ***
386:
387: * imach.c: Summary: 0.98r4 working
388:
389: * Makefile: Summary: linuxrpm added
390:
391: * Makefile: *** empty log message ***
392:
393: * imach.c: Summary: temporary not working
394:
1.42 brouard 395: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 396:
397: * imach.c: Summary: 0.98r4
398:
1.42 brouard 399: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 400:
401: * Makefile: *** empty log message ***
402:
1.42 brouard 403: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 404:
405: * Makefile:
406: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
407:
408: * imach.c: Summary: minor typo
409:
410: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
411:
412: Author: Nicolas Brouard
413:
1.42 brouard 414: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 415:
416: * imach.c: Summary: Start working on projected prevalences
417:
1.42 brouard 418: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 419:
420: * imach.c: Summary: Adding ftolpl parameter
421: Author: N Brouard
422:
423: We had difficulties to get smoothed confidence intervals. It was due
424: to the period prevalence which wasn't computed accurately. The inner
425: parameter ftolpl is now an outer parameter of the .imach parameter
426: file after estepm. If ftolpl is small 1.e-4 and estepm too,
427: computation are long.
428:
429: * version.h: *** empty log message ***
430:
431: * imach.c: Summary: temporary
432:
1.42 brouard 433: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 434:
435: * Makefile: *** empty log message ***
436:
437: * setup.iss.in: Summary: some new subdirs
438:
439: * imach.c: *** empty log message ***
440:
441: * setup.iss.in:
442: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
443:
1.42 brouard 444: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 445:
446: * imach.c: *** empty log message ***
447:
1.42 brouard 448: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 449:
450: * imach.c:
451: Summary: 0.98r3 some clarification for graphs on likelihood contributions
452:
1.42 brouard 453: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 454:
455: * imach.c: Summary: Some new graphs of contribution to likelihood
456:
1.42 brouard 457: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 458:
459: * Makefile:
460: Summary: Version read from version.h, itself read with cmake
461:
462: * imach.c: Summary: looking at better estimation of the hessian
463:
464: Also a better criteria for convergence to the period prevalence And
465: therefore adding the number of years needed to converge. (The
466: prevalence in any alive state shold sum to one
467:
468: * Makefile: *** empty log message ***
469:
1.42 brouard 470: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 471:
472: * imach.c:
473: Summary: Adding some overall graph on contribution to likelihood. Might change
474:
1.42 brouard 475: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 476:
477: * Makefile: *** empty log message ***
478:
479: * imach.c: Summary: 0.98r0
480:
1.46 brouard 481: - Some new graphs like survival functions
1.38 brouard 482: - Some bugs fixed like model=1+age+V2.
483:
484: * ChangeLog, Makefile: Summary: 0.98r0
485:
486: * CMakeLists.txt: Summary: Some tests for setup.iss
487:
1.37 brouard 488: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
489:
490: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
491:
1.36 brouard 492: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
493:
494: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
495:
1.35 brouard 496: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
497:
498: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
499:
500: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
501:
502: * imach.c (Module): Merging 1.61 to 1.162
503:
504: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
505:
506: * prevlim.h (Module):
507:
1.34 brouard 508: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
509:
510: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
511: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
512:
1.33 brouard 513: 2010-04-29 brouard <brouard@ined.fr>
514:
515: * imach.c (Module): Checking covariates for more complex models
516: than V1+V2. A lot of change to be done. Unstable.
517:
518: 2010-04-26 brouard <brouard@ined.fr>
519:
520: * imach.c (Module): merging some libgsl code. Fixing computation
521: of likelione (using inter/intrapolation if mle = 0) in order to
522: get same likelihood as if mle=1.
523: Some cleaning of code and comments added.
524:
1.32 brouard 525: 2009-10-29 brouard <brouard@ined.fr>
526:
527: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
528:
1.31 brouard 529: 2006-06-30 Brouard Nicolas <brouard@localhost>
530:
531: * imach.c (Module): Clarifications on computing e.j
532:
1.30 brouard 533: 2006-04-28 Brouard Nicolas <brouard@localhost>
534:
535: * imach.c (Module): Yes the sum of survivors was wrong since
536: imach-114 because nhstepm was no more computed in the age
537: loop. Now we define nhstepma in the age loop.
1.31 brouard 538: (Module): In order to speed up (in case of numerous covariates) we
539: compute health expectancies (without variances) in a first step
540: and then all the health expectancies with variances or standard
541: deviation (needs data from the Hessian matrices) which slows the
542: computation.
543: In the future we should be able to stop the program is only health
544: expectancies and graph are needed without standard deviations.
1.30 brouard 545:
1.29 lievre 546: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
547:
548: * imach.iss (Module):
549:
550: * imach.c (Module): bugs in evsi + population file added in htm output file
551:
552: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
553:
554: * imach.c (Module):
555:
1.27 brouard 556: 2006-03-20 Brouard Nicolas <brouard@localhost>
557:
1.28 brouard 558: * imach.c (Module): <title> changed, corresponds to .htm file
559: name. <head> headers where missing.
560:
1.27 brouard 561: * Makefile (Module): 0.98g
562:
563: * imach.c (Module): Weights can have a decimal point as for
564: English (a comma might work with a correct LC_NUMERIC environment,
565: otherwise the weight is truncated).
566: Modification of warning when the covariates values are not 0 or
567: 1.
568: Version 0.98g
569:
1.24 lievre 570: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
571:
1.26 lievre 572: * imach.c (Module): Comments concerning covariates added
573:
1.25 lievre 574: * noreg-setup.iss (Module): Version 0.98f
575:
1.24 lievre 576: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
577:
578: * imach.c (Module): refinements in the computation of lli if
579: status=-2 in order to have more reliable computation if stepm is
580: not 1 month. Version 0.98f
581:
1.22 brouard 582: 2006-03-15 Brouard Nicolas <brouard@localhost>
583:
584: * imach.c (Module): Bug if status = -2, the loglikelihood was
585: computed as likelihood omitting the logarithm. Version O.98e
586:
1.21 brouard 587: 2006-03-14 Brouard Nicolas <brouard@localhost>
588:
589: * imach.c (Module): varevsij Comments added explaining the second
590: table of variances if popbased=1 .
591: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
592: (Module): Function pstamp added
593: (Module): Version 0.98d
594:
1.20 brouard 595: 2006-03-06 Brouard Nicolas <brouard@localhost>
596:
597: * imach.c (Module): Variance-covariance wrong links and
598: varian-covariance of ej. is needed (Saito).
599:
1.19 brouard 600: 2006-02-27 Brouard Nicolas <brouard@localhost>
601:
602: * imach.c (Module): One freematrix added in mlikeli!
603:
604: 2006-02-26 Brouard Nicolas <brouard@localhost>
605:
606: * imach.c (Module): Some improvements in processing parameter
607: filename with strsep.
608:
609: 2006-02-24 Brouard Nicolas <brouard@localhost>
610:
611: * imach.c (Module): Memory leaks checks with valgrind and:
612: datafile was not closed, some imatrix were not freed and on matrix
613: allocation too.
614:
1.16 lievre 615: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
616:
1.18 lievre 617: * strsep.c (Module): Inclusion because not in mingw32!!!
618:
1.17 lievre 619: * setup.iss.in (Module): IMACHSETUPVERSION added
620:
621: * noreg-setup.iss (Module): added to cvs tree
622:
1.16 lievre 623: * Makefile (Module): IMACHSETUPVERSION added
624:
1.15 brouard 625: 2006-01-30 BROUARD Nicolas <brouard@localhost>
626:
1.23 brouard 627: * Makefile (Module, Module): Latest Makefile
628:
1.15 brouard 629: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
630:
631: 2006-01-27 BROUARD Nicolas <brouard@localhost>
632:
633: * noreg-setup.iss (Module): ADDED
634:
635: 2006-01-24 BROUARD Nicolas <brouard@localhost>
636:
637: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
638:
1.14 brouard 639: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
640:
641: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
642:
643: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
644:
1.12 lievre 645: 2005-09-30 <lievre@PC_00595>
646:
647: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 648: (Module): If the status is missing at the last wave but we know
649: that the person is alive, then we can code his/her status as -2
650: (instead of missing=-1 in earlier versions) and his/her
651: contributions to the likelihood is 1 - Prob of dying from last
652: health status (= 1-p13= p11+p12 in the easiest case of somebody in
653: the healthy state at last known wave). Version is 0.98
1.12 lievre 654:
1.11 brouard 655: 2004-05-20 Brouard Nicolas <brouard@localhost>
656:
657: * imach.c (Repository):
658: Agnes added a direct estimation of mortality (without the need of
659: computing period prevalence and differential mortality). Thus here
660: is version 0.97a which has been distributed to some people at
661: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
662: mortality using covariates is not done today. Estimating direct
663: mortality is a very different process because it doesn't need
664: interpolation because it is easy to get the lx from the force of
665: the mortality mux in the simplest case as for a Gompertz (log mux
666: = a + b*x . But we have been able to incorporate the new code
667: within former imach program (0.96d) without deteriorating too much
668: the understanding of the program.
669:
1.10 brouard 670: 2003-06-25 <brouard@BROUARD>
671:
672: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
673: exist so I changed back to asctime which exists.
674: (Module): Version 0.96b
675:
676: 2003-06-24 <brouard@BROUARD>
677:
678: * imach.c (Module): Some bugs corrected for windows. Also, when
679: mle=-1 a template is output in file "or"mypar.txt with the design
680: of the covariance matrix to be input.
681:
1.9 brouard 682: 2003-06-25 Brouard Nicolas <brouard@homebrou>
683:
684: * imach.c (Repository): Duplicated warning errors corrected.
685: (Repository): Elapsed time after each iteration is now output. It
686: helps to forecast when convergence will be reached. Elapsed time
687: is stamped in powell. We created a new html file for the graphs
688: concerning matrix of covariance. It has extension -cov.htm.
689:
1.8 brouard 690: 2003-06-23 Brouard Nicolas <brouard@homebrou>
691:
692: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
693:
694: 2003-06-18 Brouard Nicolas <brouard@homebrou>
695:
696: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
697:
1.7 brouard 698: 2003-06-17 Brouard Nicolas <brouard@homebrou>
699:
700:
701: * imach.c (Repository): Check when date of death was earlier that
702: current date of interview. It may happen when the death was just
703: prior to the death. In this case, dh was negative and likelihood
704: was wrong (infinity). We still send an "Error" but patch by
705: assuming that the date of death was just one stepm after the
706: interview.
707: (Repository): Because some people have very long ID (first column)
708: we changed int to long in num[] and we added a new lvector for
709: memory allocation. But we also truncated to 8 characters (left
710: truncation)
711:
712: (Repository): No more line truncation errors.
713:
714: 2003-06-14 Brouard Nicolas <brouard@homebrou>
715:
716: * imach.c (Repository): Add of a routine likelione (likelihood
717: only once) which prints on a text file
718: (ilk) the contributions to the likelihood for each
719: individual/wave.
720:
721: 2003-06-13 Brouard Nicolas <brouard@homebrou>
722: * imach.c (Repository): Replace "freqsummary" at a correct
723: place. It differs from routine "prevalence" which may be called
724: many times. Probs is memory consuming and must be used with
725: parcimony.
726:
727: 2003-06-17 <brouard@BROUARD>
728:
729: * timeval.h (Module): Added included file to make use of
730: gettimeofday working on win32 with cygwin.
731:
732: 2003-05-16 Brouard Nicolas <brouard@brouard>
733: * imach.c (Module): Insert of a warning if the delay between two
734: waves is negative.
735:
736: * imach.c (Module):
737:
738: 2003-05-03 <brouard@BROUARD>
739:
740: * imach.c: Some cleaning
741:
742: 2003-03-28 <brouard@BROUARD>
743: * imach.c (Module): In version up to 0.92 likelihood was computed
744: as if date of death was unknown. Death was treated as any other
745: health state: the date of the interview describes the actual state
746: and not the date of a change in health state. The former idea was
747: to consider that at each interview the state was recorded
748: (healthy, disable or death) and IMaCh was corrected; but when we
749: introduced the exact date of death then we should have modified
750: the contribution of an exact death to the likelihood. This new
751: contribution is smaller and very dependent of the step unit
752: stepm. It is no more the probability to die between last interview
753: and month of death but the probability to survive from last
754: interview up to one month before death multiplied by the
755: probability to die within a month. Thanks to Chris
756: Jackson for correcting this bug. Former versions increased
757: mortality artificially. The bad side is that we add another loop
758: which slows down the processing. The difference can be up to 10%
759: lower mortality.
760:
761: 2002-05-30 <brouard@BROUARD>
762: *
763: * imach.c (Module): Add correlation matrix of one-step
764: probabilities and covariance matrix
765:
766:
767:
768:
769:
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