Annotation of imach/src/ChangeLog, revision 1.53
1.53 ! brouard 1: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
! 4:
1.52 brouard 5: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
6:
7: * imach.c: With products of covariates (age or dummies or
8: quantitatives), estimates of parameters were good but when
9: estimating variances the positions of newly created covariates
10: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
11:
1.51 brouard 12: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
13:
14: * imach.c (Module): Some attempts to find a bug of wrong estimates
15: of confidencce intervals with product in the equation modelC
16:
17: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
18:
19: * imach.c (Module): Some minor improvements
20:
1.50 brouard 21: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
22:
23: * imach.c (Module): Adding link to text data files
24:
1.49 brouard 25: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
26:
27: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
28:
1.48 brouard 29: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
30:
31: * imach.c (Module): Fixed covariates (dummy or quantitative)
32: with missing values have never been allowed but are ERRORS and
33: program quits. Standard deviations of fixed covariates were
34: wrongly computed. Mean and standard deviations of time varying
35: covariates are still not computed.
36:
37: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
1.47 brouard 38:
39: * 99r25 Improvements in fixing discrepancies between covariates
40: missing in result line but in model.
41:
1.46 brouard 42: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 43: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
44:
1.46 brouard 45: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
1.45 brouard 46:
47: * ./ (Module): Fixed bug on result:
48:
1.46 brouard 49: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
1.43 brouard 50:
51: * imach.c (Module): Fix bug on quitting after result lines!
1.44 brouard 52: (Module): Version 0.99r21
1.43 brouard 53:
1.42 brouard 54: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
55:
56: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
57:
58:
59: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
1.41 brouard 60:
61: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
62:
1.42 brouard 63: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
1.40 brouard 64:
65: * (Module): imach.c Update mle=-3 (for computing Life expectancy
66: and life table from the data without any state)
67:
1.42 brouard 68: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 69:
70: * version.h: Summary: version 0.99.r19
71:
72: * imach.c: Summary: Projection syntax simplified
73: We can now start projections, forward or backward, from the mean date
74: of inteviews up to or down to a number of years of projection:
75: prevforecast=1 yearsfproj=15.3 mobil_average=0
76: or
77: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
78: or
79: prevbackcast=1 yearsbproj=12.3 mobil_average=1
80: or
81: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
82:
1.42 brouard 83: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 84:
85: * imach.c: Summary: doxygen tex bug
86:
1.42 brouard 87: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 88:
89: * imach.c: Summary: There was some wrong lines added
90:
1.42 brouard 91: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 92:
93: * Makefile, imach.c: *** empty log message ***
94:
95: * ChangeLog: Summary: C=
96:
97: * imach.c: Summary: Some updates
98:
99: * imach.c: Summary: Before ncovmax
100:
101: * version.h: *** empty log message ***
102:
103: * imach.c: Summary: 0.99r18 unlimited number of individuals
104: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
105:
1.42 brouard 106: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 107:
108: * imach.c: Summary: Bug for young ages (<-30) will be in r17
109:
1.42 brouard 110: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 111:
112: * Makefile: Summary: 0.99r16
113:
1.42 brouard 114: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 115:
116: * imach.c: Summary: Some bugs fixed
117:
1.42 brouard 118: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.39 brouard 119:
120: * imach.c: Summary: Bug for young ages (<-30) will be in r17
121:
1.42 brouard 122: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 123:
124: * imach.c: Summary: Some bugs fixed
125:
1.42 brouard 126: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 127:
128: * imach.c:
129: Summary: Bug fixed by providing frequencies only for non missing covariates
130:
1.42 brouard 131: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 132:
133: * imach.c: Summary: some minor bugs
134:
1.42 brouard 135: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 136:
137: * README.txt: *** empty log message ***
138:
139: * imach.c: Summary: Some bugs fixed, valgrind tested
140:
1.42 brouard 141: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 142:
143: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
144:
145: * imach.c:
146: Summary: Computing mean and stdeviation of fixed quantitative variables
147:
1.42 brouard 148: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 149:
150: * imach.c: Summary: Some minor bugs fixed
151:
152: * version.h: *** empty log message ***
153:
1.42 brouard 154: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 155:
156: * imach.c: *** empty log message ***
157:
158: * imach.c: Summary: Adding second argument for quitting
159:
1.42 brouard 160: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 161:
162: * Makefile, README.txt, imach.c: Summary: 0.99r15
163: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
164:
1.42 brouard 165: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 166:
167: * imach.c: Summary: temporary working
168:
1.42 brouard 169: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 170:
171: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
172:
1.42 brouard 173: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 174:
175: * imach.c: Summary: BOM files can be read now
176:
1.42 brouard 177: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 178:
179: * imach.c: Summary: Graphs improvements
180:
181: * imach.c: Summary: Saito's color
182:
1.42 brouard 183: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 184:
185: * imach.c: Summary: Version 0.99r14
186:
1.42 brouard 187: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 188:
189: * imach.c: Summary: More documentation on projections
190:
191: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
192:
193: * imach.c: Summary: Some bug with rint
194:
1.42 brouard 195: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 196:
197: * imach.c: *** empty log message ***
198:
1.42 brouard 199: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 200:
201: * imach.c: Summary: Code into subroutine, cleanings
202:
1.42 brouard 203: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 204:
205: * imach.c:
206: Summary: backprojection and confidence intervals of backprevalence
207:
1.42 brouard 208: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 209:
210: * imach.c: Summary: temporary save for backprojection
211:
212: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
213:
1.42 brouard 214: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 215:
216: * imach.c: Summary: imach 0.99r13 Some bugs fixed
217:
218: * imach.c: Summary: Labels in graphs
219:
1.42 brouard 220: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 221:
222: * imach.c: Summary: to save
223:
1.42 brouard 224: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 225:
226: * imach.c: *** empty log message ***
227:
1.42 brouard 228: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 229:
230: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
231:
1.42 brouard 232: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 233:
234: * imach.c: Summary: Gnuplot indexations fixed (humm)
235:
236: * imach.c:
237: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
238:
1.42 brouard 239: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 240:
241: * imach.c: Summary: Version 0.99r12
242: Some cleanings, conformed with updated documentation.
243:
1.42 brouard 244: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 245:
246: * version.h: *** empty log message ***
247:
248: * version.h: Summary:0.99r11
249:
1.42 brouard 250: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 251:
252: * imach.c: Summary: Temp
253:
1.42 brouard 254: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 255:
256: * imach.c: Summary: Temporary
257:
1.42 brouard 258: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 259:
260: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
261:
262: * imach.c: Summary: Fixing data parameter line
263:
1.42 brouard 264: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 265:
266: * imach.c: Summary: 0.99 in progress
267:
1.42 brouard 268: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 269:
270: * imach.c: *** empty log message ***
271:
272: * imach.c: Summary: not working
273:
1.42 brouard 274: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 275:
276: * imach.c: Summary: continue
277:
1.42 brouard 278: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 279:
280: * imach.c: Summary: Starting values from frequencies
281:
282: * imach.c: *** empty log message ***
283:
1.42 brouard 284: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 285:
286: * imach.c: *** empty log message ***
287:
1.42 brouard 288: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 289:
290: * imach.c: Summary: Fixing a lots
291:
1.42 brouard 292: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 293:
294: * imach.c: Summary: gnuplot problem in Back projection to fix
295:
296: * imach.c: Summary: Better
297:
1.42 brouard 298: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 299:
300: * imach.c:
301: Summary: Improvement in Powell output in order to copy and paste
302:
303: * imach.c: Summary: Starting tests of 0.99
304:
305: * imach.c: Summary: to valgrind
306:
1.42 brouard 307: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 308:
309: * imach.c: *** empty log message ***
310:
1.42 brouard 311: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 312:
313: * imach.c: *** empty log message ***
314:
315: * imach.c: Summary: not working
316:
1.42 brouard 317: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 318:
319: * imach.c: Summary: not working
320:
321: * imach.c: Summary: Not working
322:
1.42 brouard 323: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 324:
325: * imach.c: Summary: Completing for func too
326:
1.42 brouard 327: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 328:
329: * imach.c: Summary: Fixing some arrays, still debugging
330:
1.42 brouard 331: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 332:
333: * imach.c:
334: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
335:
1.42 brouard 336: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 337:
338: * imach.c: Summary: temp
339:
340: * imach.c: Summary: saving but not running
341:
1.42 brouard 342: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 343:
344: * imach.c: Summary: Fixes
345:
1.42 brouard 346: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 347:
348: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
349:
350: * setup.iss, Makefile, version.h: *** empty log message ***
351:
352: * imach.c: Summary: temporary
353:
1.42 brouard 354: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 355:
356: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
357:
1.42 brouard 358: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 359:
360: * imach.c: Summary: minor bug
361:
362: * imach.c: Summary: 0.99r2
363:
1.42 brouard 364: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 365:
366: * imach.c: *** empty log message ***
367:
1.42 brouard 368: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 369:
370: * imach.c: Summary: 0.99 Back projections
371:
1.42 brouard 372: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 373:
374: * imach.c: Summary: Experimental backcast
375:
1.42 brouard 376: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 377:
378: * imach.c: Summary: 0.98r4 Warning and status=-2
379:
380: Version 0.98r4 is now:
381: - displaying an error when status is -1, date of interview unknown and date of death known;
382: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
383: Older changes concerning s=-2, dating from 2005 have been supersed.
384:
385: * Makefile: *** empty log message ***
386:
1.42 brouard 387: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 388:
389: * Makefile: *** empty log message ***
390:
391: * imach.c: Summary: 0.98r4 working
392:
393: * Makefile: Summary: linuxrpm added
394:
395: * Makefile: *** empty log message ***
396:
397: * imach.c: Summary: temporary not working
398:
1.42 brouard 399: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 400:
401: * imach.c: Summary: 0.98r4
402:
1.42 brouard 403: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 404:
405: * Makefile: *** empty log message ***
406:
1.42 brouard 407: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 408:
409: * Makefile:
410: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
411:
412: * imach.c: Summary: minor typo
413:
414: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
415:
416: Author: Nicolas Brouard
417:
1.42 brouard 418: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 419:
420: * imach.c: Summary: Start working on projected prevalences
421:
1.42 brouard 422: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 423:
424: * imach.c: Summary: Adding ftolpl parameter
425: Author: N Brouard
426:
427: We had difficulties to get smoothed confidence intervals. It was due
428: to the period prevalence which wasn't computed accurately. The inner
429: parameter ftolpl is now an outer parameter of the .imach parameter
430: file after estepm. If ftolpl is small 1.e-4 and estepm too,
431: computation are long.
432:
433: * version.h: *** empty log message ***
434:
435: * imach.c: Summary: temporary
436:
1.42 brouard 437: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 438:
439: * Makefile: *** empty log message ***
440:
441: * setup.iss.in: Summary: some new subdirs
442:
443: * imach.c: *** empty log message ***
444:
445: * setup.iss.in:
446: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
447:
1.42 brouard 448: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 449:
450: * imach.c: *** empty log message ***
451:
1.42 brouard 452: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 453:
454: * imach.c:
455: Summary: 0.98r3 some clarification for graphs on likelihood contributions
456:
1.42 brouard 457: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 458:
459: * imach.c: Summary: Some new graphs of contribution to likelihood
460:
1.42 brouard 461: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 462:
463: * Makefile:
464: Summary: Version read from version.h, itself read with cmake
465:
466: * imach.c: Summary: looking at better estimation of the hessian
467:
468: Also a better criteria for convergence to the period prevalence And
469: therefore adding the number of years needed to converge. (The
470: prevalence in any alive state shold sum to one
471:
472: * Makefile: *** empty log message ***
473:
1.42 brouard 474: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 475:
476: * imach.c:
477: Summary: Adding some overall graph on contribution to likelihood. Might change
478:
1.42 brouard 479: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1.38 brouard 480:
481: * Makefile: *** empty log message ***
482:
483: * imach.c: Summary: 0.98r0
484:
1.46 brouard 485: - Some new graphs like survival functions
1.38 brouard 486: - Some bugs fixed like model=1+age+V2.
487:
488: * ChangeLog, Makefile: Summary: 0.98r0
489:
490: * CMakeLists.txt: Summary: Some tests for setup.iss
491:
1.37 brouard 492: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
493:
494: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
495:
1.36 brouard 496: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
497:
498: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
499:
1.35 brouard 500: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
501:
502: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
503:
504: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
505:
506: * imach.c (Module): Merging 1.61 to 1.162
507:
508: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
509:
510: * prevlim.h (Module):
511:
1.34 brouard 512: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
513:
514: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
515: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
516:
1.33 brouard 517: 2010-04-29 brouard <brouard@ined.fr>
518:
519: * imach.c (Module): Checking covariates for more complex models
520: than V1+V2. A lot of change to be done. Unstable.
521:
522: 2010-04-26 brouard <brouard@ined.fr>
523:
524: * imach.c (Module): merging some libgsl code. Fixing computation
525: of likelione (using inter/intrapolation if mle = 0) in order to
526: get same likelihood as if mle=1.
527: Some cleaning of code and comments added.
528:
1.32 brouard 529: 2009-10-29 brouard <brouard@ined.fr>
530:
531: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
532:
1.31 brouard 533: 2006-06-30 Brouard Nicolas <brouard@localhost>
534:
535: * imach.c (Module): Clarifications on computing e.j
536:
1.30 brouard 537: 2006-04-28 Brouard Nicolas <brouard@localhost>
538:
539: * imach.c (Module): Yes the sum of survivors was wrong since
540: imach-114 because nhstepm was no more computed in the age
541: loop. Now we define nhstepma in the age loop.
1.31 brouard 542: (Module): In order to speed up (in case of numerous covariates) we
543: compute health expectancies (without variances) in a first step
544: and then all the health expectancies with variances or standard
545: deviation (needs data from the Hessian matrices) which slows the
546: computation.
547: In the future we should be able to stop the program is only health
548: expectancies and graph are needed without standard deviations.
1.30 brouard 549:
1.29 lievre 550: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
551:
552: * imach.iss (Module):
553:
554: * imach.c (Module): bugs in evsi + population file added in htm output file
555:
556: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
557:
558: * imach.c (Module):
559:
1.27 brouard 560: 2006-03-20 Brouard Nicolas <brouard@localhost>
561:
1.28 brouard 562: * imach.c (Module): <title> changed, corresponds to .htm file
563: name. <head> headers where missing.
564:
1.27 brouard 565: * Makefile (Module): 0.98g
566:
567: * imach.c (Module): Weights can have a decimal point as for
568: English (a comma might work with a correct LC_NUMERIC environment,
569: otherwise the weight is truncated).
570: Modification of warning when the covariates values are not 0 or
571: 1.
572: Version 0.98g
573:
1.24 lievre 574: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
575:
1.26 lievre 576: * imach.c (Module): Comments concerning covariates added
577:
1.25 lievre 578: * noreg-setup.iss (Module): Version 0.98f
579:
1.24 lievre 580: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
581:
582: * imach.c (Module): refinements in the computation of lli if
583: status=-2 in order to have more reliable computation if stepm is
584: not 1 month. Version 0.98f
585:
1.22 brouard 586: 2006-03-15 Brouard Nicolas <brouard@localhost>
587:
588: * imach.c (Module): Bug if status = -2, the loglikelihood was
589: computed as likelihood omitting the logarithm. Version O.98e
590:
1.21 brouard 591: 2006-03-14 Brouard Nicolas <brouard@localhost>
592:
593: * imach.c (Module): varevsij Comments added explaining the second
594: table of variances if popbased=1 .
595: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
596: (Module): Function pstamp added
597: (Module): Version 0.98d
598:
1.20 brouard 599: 2006-03-06 Brouard Nicolas <brouard@localhost>
600:
601: * imach.c (Module): Variance-covariance wrong links and
602: varian-covariance of ej. is needed (Saito).
603:
1.19 brouard 604: 2006-02-27 Brouard Nicolas <brouard@localhost>
605:
606: * imach.c (Module): One freematrix added in mlikeli!
607:
608: 2006-02-26 Brouard Nicolas <brouard@localhost>
609:
610: * imach.c (Module): Some improvements in processing parameter
611: filename with strsep.
612:
613: 2006-02-24 Brouard Nicolas <brouard@localhost>
614:
615: * imach.c (Module): Memory leaks checks with valgrind and:
616: datafile was not closed, some imatrix were not freed and on matrix
617: allocation too.
618:
1.16 lievre 619: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
620:
1.18 lievre 621: * strsep.c (Module): Inclusion because not in mingw32!!!
622:
1.17 lievre 623: * setup.iss.in (Module): IMACHSETUPVERSION added
624:
625: * noreg-setup.iss (Module): added to cvs tree
626:
1.16 lievre 627: * Makefile (Module): IMACHSETUPVERSION added
628:
1.15 brouard 629: 2006-01-30 BROUARD Nicolas <brouard@localhost>
630:
1.23 brouard 631: * Makefile (Module, Module): Latest Makefile
632:
1.15 brouard 633: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
634:
635: 2006-01-27 BROUARD Nicolas <brouard@localhost>
636:
637: * noreg-setup.iss (Module): ADDED
638:
639: 2006-01-24 BROUARD Nicolas <brouard@localhost>
640:
641: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
642:
1.14 brouard 643: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
644:
645: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
646:
647: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
648:
1.12 lievre 649: 2005-09-30 <lievre@PC_00595>
650:
651: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1.13 lievre 652: (Module): If the status is missing at the last wave but we know
653: that the person is alive, then we can code his/her status as -2
654: (instead of missing=-1 in earlier versions) and his/her
655: contributions to the likelihood is 1 - Prob of dying from last
656: health status (= 1-p13= p11+p12 in the easiest case of somebody in
657: the healthy state at last known wave). Version is 0.98
1.12 lievre 658:
1.11 brouard 659: 2004-05-20 Brouard Nicolas <brouard@localhost>
660:
661: * imach.c (Repository):
662: Agnes added a direct estimation of mortality (without the need of
663: computing period prevalence and differential mortality). Thus here
664: is version 0.97a which has been distributed to some people at
665: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
666: mortality using covariates is not done today. Estimating direct
667: mortality is a very different process because it doesn't need
668: interpolation because it is easy to get the lx from the force of
669: the mortality mux in the simplest case as for a Gompertz (log mux
670: = a + b*x . But we have been able to incorporate the new code
671: within former imach program (0.96d) without deteriorating too much
672: the understanding of the program.
673:
1.10 brouard 674: 2003-06-25 <brouard@BROUARD>
675:
676: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
677: exist so I changed back to asctime which exists.
678: (Module): Version 0.96b
679:
680: 2003-06-24 <brouard@BROUARD>
681:
682: * imach.c (Module): Some bugs corrected for windows. Also, when
683: mle=-1 a template is output in file "or"mypar.txt with the design
684: of the covariance matrix to be input.
685:
1.9 brouard 686: 2003-06-25 Brouard Nicolas <brouard@homebrou>
687:
688: * imach.c (Repository): Duplicated warning errors corrected.
689: (Repository): Elapsed time after each iteration is now output. It
690: helps to forecast when convergence will be reached. Elapsed time
691: is stamped in powell. We created a new html file for the graphs
692: concerning matrix of covariance. It has extension -cov.htm.
693:
1.8 brouard 694: 2003-06-23 Brouard Nicolas <brouard@homebrou>
695:
696: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
697:
698: 2003-06-18 Brouard Nicolas <brouard@homebrou>
699:
700: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
701:
1.7 brouard 702: 2003-06-17 Brouard Nicolas <brouard@homebrou>
703:
704:
705: * imach.c (Repository): Check when date of death was earlier that
706: current date of interview. It may happen when the death was just
707: prior to the death. In this case, dh was negative and likelihood
708: was wrong (infinity). We still send an "Error" but patch by
709: assuming that the date of death was just one stepm after the
710: interview.
711: (Repository): Because some people have very long ID (first column)
712: we changed int to long in num[] and we added a new lvector for
713: memory allocation. But we also truncated to 8 characters (left
714: truncation)
715:
716: (Repository): No more line truncation errors.
717:
718: 2003-06-14 Brouard Nicolas <brouard@homebrou>
719:
720: * imach.c (Repository): Add of a routine likelione (likelihood
721: only once) which prints on a text file
722: (ilk) the contributions to the likelihood for each
723: individual/wave.
724:
725: 2003-06-13 Brouard Nicolas <brouard@homebrou>
726: * imach.c (Repository): Replace "freqsummary" at a correct
727: place. It differs from routine "prevalence" which may be called
728: many times. Probs is memory consuming and must be used with
729: parcimony.
730:
731: 2003-06-17 <brouard@BROUARD>
732:
733: * timeval.h (Module): Added included file to make use of
734: gettimeofday working on win32 with cygwin.
735:
736: 2003-05-16 Brouard Nicolas <brouard@brouard>
737: * imach.c (Module): Insert of a warning if the delay between two
738: waves is negative.
739:
740: * imach.c (Module):
741:
742: 2003-05-03 <brouard@BROUARD>
743:
744: * imach.c: Some cleaning
745:
746: 2003-03-28 <brouard@BROUARD>
747: * imach.c (Module): In version up to 0.92 likelihood was computed
748: as if date of death was unknown. Death was treated as any other
749: health state: the date of the interview describes the actual state
750: and not the date of a change in health state. The former idea was
751: to consider that at each interview the state was recorded
752: (healthy, disable or death) and IMaCh was corrected; but when we
753: introduced the exact date of death then we should have modified
754: the contribution of an exact death to the likelihood. This new
755: contribution is smaller and very dependent of the step unit
756: stepm. It is no more the probability to die between last interview
757: and month of death but the probability to survive from last
758: interview up to one month before death multiplied by the
759: probability to die within a month. Thanks to Chris
760: Jackson for correcting this bug. Former versions increased
761: mortality artificially. The bad side is that we add another loop
762: which slows down the processing. The difference can be up to 10%
763: lower mortality.
764:
765: 2002-05-30 <brouard@BROUARD>
766: *
767: * imach.c (Module): Add correlation matrix of one-step
768: probabilities and covariance matrix
769:
770:
771:
772:
773:
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