Annotation of imach/src/ChangeLog, revision 1.55
1.55 ! brouard 1: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
! 2:
! 3: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
! 4: coredumped, revealed by Feiuno, thank you.
! 5:
! 6: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
! 7:
! 8: * imach.c (Module): Adding the Wald tests from the log to the main
! 9: htm for better display of the maximum likelihood estimators.
! 10:
! 11: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
! 12:
! 13: * imach.c: With products of covariates (age or dummies or
! 14: quantitatives), estimates of parameters were good but when
! 15: estimating variances the positions of newly created covariates
! 16: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
! 17:
! 18: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
! 19:
! 20: * imach.c (Module): Some attempts to find a bug of wrong estimates
! 21: of confidencce intervals with product in the equation modelC
! 22:
! 23: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
! 24:
! 25: * imach.c (Module): Some minor improvements
! 26:
! 27: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
! 28:
! 29: * imach.c (Module): Adding link to text data files
! 30:
! 31: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
! 32:
! 33: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
! 34:
! 35: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
! 36:
! 37: * imach.c (Module): Fixed covariates (dummy or quantitative)
! 38: with missing values have never been allowed but are ERRORS and
! 39: program quits. Standard deviations of fixed covariates were
! 40: wrongly computed. Mean and standard deviations of time varying
! 41: covariates are still not computed.
! 42:
! 43: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
! 44:
! 45: * 99r25 Improvements in fixing discrepancies between covariates
! 46: missing in result line but in model.
! 47:
! 48: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
! 49: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
! 50:
! 51: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
! 52:
! 53: * ./ (Module): Fixed bug on result:
! 54:
! 55: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
! 56:
! 57: * imach.c (Module): Fix bug on quitting after result lines!
! 58: (Module): Version 0.99r21
! 59:
! 60: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
! 61:
! 62: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
! 63:
! 64:
! 65: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
! 66:
! 67: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
! 68:
! 69: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
! 70:
! 71: * (Module): imach.c Update mle=-3 (for computing Life expectancy
! 72: and life table from the data without any state)
! 73:
! 74: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
! 75:
! 76: * version.h: Summary: version 0.99.r19
! 77:
! 78: * imach.c: Summary: Projection syntax simplified
! 79: We can now start projections, forward or backward, from the mean date
! 80: of inteviews up to or down to a number of years of projection:
! 81: prevforecast=1 yearsfproj=15.3 mobil_average=0
! 82: or
! 83: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
! 84: or
! 85: prevbackcast=1 yearsbproj=12.3 mobil_average=1
! 86: or
! 87: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
! 88:
! 89: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
! 90:
! 91: * imach.c: Summary: doxygen tex bug
! 92:
! 93: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
! 94:
! 95: * imach.c: Summary: There was some wrong lines added
! 96:
! 97: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
! 98:
! 99: * Makefile, imach.c: *** empty log message ***
! 100:
! 101: * ChangeLog: Summary: C=
! 102:
! 103: * imach.c: Summary: Some updates
! 104:
! 105: * imach.c: Summary: Before ncovmax
! 106:
! 107: * version.h: *** empty log message ***
! 108:
! 109: * imach.c: Summary: 0.99r18 unlimited number of individuals
! 110: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
! 111:
! 112: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
! 113:
! 114: * imach.c: Summary: Bug for young ages (<-30) will be in r17
! 115:
! 116: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
! 117:
! 118: * Makefile: Summary: 0.99r16
! 119:
! 120: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
! 121:
! 122: * imach.c: Summary: Some bugs fixed
! 123:
! 124: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
! 125:
! 126: * imach.c: Summary: Bug for young ages (<-30) will be in r17
! 127:
! 128: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
! 129:
! 130: * imach.c: Summary: Some bugs fixed
! 131:
! 132: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
! 133:
! 134: * imach.c:
! 135: Summary: Bug fixed by providing frequencies only for non missing covariates
! 136:
! 137: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
! 138:
! 139: * imach.c: Summary: some minor bugs
! 140:
! 141: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
! 142:
! 143: * README.txt: *** empty log message ***
! 144:
! 145: * imach.c: Summary: Some bugs fixed, valgrind tested
! 146:
! 147: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
! 148:
! 149: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
! 150:
! 151: * imach.c:
! 152: Summary: Computing mean and stdeviation of fixed quantitative variables
! 153:
! 154: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
! 155:
! 156: * imach.c: Summary: Some minor bugs fixed
! 157:
! 158: * version.h: *** empty log message ***
! 159:
! 160: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
! 161:
! 162: * imach.c: *** empty log message ***
! 163:
! 164: * imach.c: Summary: Adding second argument for quitting
! 165:
! 166: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
! 167:
! 168: * Makefile, README.txt, imach.c: Summary: 0.99r15
! 169: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
! 170:
! 171: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
! 172:
! 173: * imach.c: Summary: temporary working
! 174:
! 175: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
! 176:
! 177: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
! 178:
! 179: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
! 180:
! 181: * imach.c: Summary: BOM files can be read now
! 182:
! 183: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
! 184:
! 185: * imach.c: Summary: Graphs improvements
! 186:
! 187: * imach.c: Summary: Saito's color
! 188:
! 189: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
! 190:
! 191: * imach.c: Summary: Version 0.99r14
! 192:
! 193: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
! 194:
! 195: * imach.c: Summary: More documentation on projections
! 196:
! 197: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
! 198:
! 199: * imach.c: Summary: Some bug with rint
! 200:
! 201: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
! 202:
! 203: * imach.c: *** empty log message ***
! 204:
! 205: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
! 206:
! 207: * imach.c: Summary: Code into subroutine, cleanings
! 208:
! 209: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
! 210:
! 211: * imach.c:
! 212: Summary: backprojection and confidence intervals of backprevalence
! 213:
! 214: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
! 215:
! 216: * imach.c: Summary: temporary save for backprojection
! 217:
! 218: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
! 219:
! 220: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
! 221:
! 222: * imach.c: Summary: imach 0.99r13 Some bugs fixed
! 223:
! 224: * imach.c: Summary: Labels in graphs
! 225:
! 226: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
! 227:
! 228: * imach.c: Summary: to save
! 229:
! 230: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
! 231:
! 232: * imach.c: *** empty log message ***
! 233:
! 234: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
! 235:
! 236: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
! 237:
! 238: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
! 239:
! 240: * imach.c: Summary: Gnuplot indexations fixed (humm)
! 241:
! 242: * imach.c:
! 243: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
! 244:
! 245: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
! 246:
! 247: * imach.c: Summary: Version 0.99r12
! 248: Some cleanings, conformed with updated documentation.
! 249:
! 250: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
! 251:
! 252: * version.h: *** empty log message ***
! 253:
! 254: * version.h: Summary:0.99r11
! 255:
! 256: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
! 257:
! 258: * imach.c: Summary: Temp
! 259:
! 260: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
! 261:
! 262: * imach.c: Summary: Temporary
! 263:
! 264: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
! 265:
! 266: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
! 267:
! 268: * imach.c: Summary: Fixing data parameter line
! 269:
! 270: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
! 271:
! 272: * imach.c: Summary: 0.99 in progress
! 273:
! 274: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
! 275:
! 276: * imach.c: *** empty log message ***
! 277:
! 278: * imach.c: Summary: not working
! 279:
! 280: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
! 281:
! 282: * imach.c: Summary: continue
! 283:
! 284: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
! 285:
! 286: * imach.c: Summary: Starting values from frequencies
! 287:
! 288: * imach.c: *** empty log message ***
! 289:
! 290: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
! 291:
! 292: * imach.c: *** empty log message ***
! 293:
! 294: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
! 295:
! 296: * imach.c: Summary: Fixing a lots
! 297:
! 298: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
! 299:
! 300: * imach.c: Summary: gnuplot problem in Back projection to fix
! 301:
! 302: * imach.c: Summary: Better
! 303:
! 304: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
! 305:
! 306: * imach.c:
! 307: Summary: Improvement in Powell output in order to copy and paste
! 308:
! 309: * imach.c: Summary: Starting tests of 0.99
! 310:
! 311: * imach.c: Summary: to valgrind
! 312:
! 313: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
! 314:
! 315: * imach.c: *** empty log message ***
! 316:
! 317: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
! 318:
! 319: * imach.c: *** empty log message ***
! 320:
! 321: * imach.c: Summary: not working
! 322:
! 323: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
! 324:
! 325: * imach.c: Summary: not working
! 326:
! 327: * imach.c: Summary: Not working
! 328:
! 329: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
! 330:
! 331: * imach.c: Summary: Completing for func too
! 332:
! 333: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
! 334:
! 335: * imach.c: Summary: Fixing some arrays, still debugging
! 336:
! 337: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
! 338:
! 339: * imach.c:
! 340: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
! 341:
! 342: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
! 343:
! 344: * imach.c: Summary: temp
! 345:
! 346: * imach.c: Summary: saving but not running
! 347:
! 348: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
! 349:
! 350: * imach.c: Summary: Fixes
! 351:
! 352: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
! 353:
! 354: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
! 355:
! 356: * setup.iss, Makefile, version.h: *** empty log message ***
! 357:
! 358: * imach.c: Summary: temporary
! 359:
! 360: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
! 361:
! 362: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
! 363:
! 364: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
! 365:
! 366: * imach.c: Summary: minor bug
! 367:
! 368: * imach.c: Summary: 0.99r2
! 369:
! 370: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
! 371:
! 372: * imach.c: *** empty log message ***
! 373:
! 374: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
! 375:
! 376: * imach.c: Summary: 0.99 Back projections
! 377:
! 378: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
! 379:
! 380: * imach.c: Summary: Experimental backcast
! 381:
! 382: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
! 383:
! 384: * imach.c: Summary: 0.98r4 Warning and status=-2
! 385:
! 386: Version 0.98r4 is now:
! 387: - displaying an error when status is -1, date of interview unknown and date of death known;
! 388: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
! 389: Older changes concerning s=-2, dating from 2005 have been supersed.
! 390:
! 391: * Makefile: *** empty log message ***
! 392:
! 393: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
! 394:
! 395: * Makefile: *** empty log message ***
! 396:
! 397: * imach.c: Summary: 0.98r4 working
! 398:
! 399: * Makefile: Summary: linuxrpm added
! 400:
! 401: * Makefile: *** empty log message ***
! 402:
! 403: * imach.c: Summary: temporary not working
! 404:
! 405: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
! 406:
! 407: * imach.c: Summary: 0.98r4
! 408:
! 409: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
! 410:
! 411: * Makefile: *** empty log message ***
! 412:
! 413: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
! 414:
! 415: * Makefile:
! 416: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
! 417:
! 418: * imach.c: Summary: minor typo
! 419:
! 420: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
! 421:
! 422: Author: Nicolas Brouard
! 423:
! 424: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
! 425:
! 426: * imach.c: Summary: Start working on projected prevalences
! 427:
! 428: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
! 429:
! 430: * imach.c: Summary: Adding ftolpl parameter
! 431: Author: N Brouard
! 432:
! 433: We had difficulties to get smoothed confidence intervals. It was due
! 434: to the period prevalence which wasn't computed accurately. The inner
! 435: parameter ftolpl is now an outer parameter of the .imach parameter
! 436: file after estepm. If ftolpl is small 1.e-4 and estepm too,
! 437: computation are long.
! 438:
! 439: * version.h: *** empty log message ***
! 440:
! 441: * imach.c: Summary: temporary
! 442:
! 443: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
! 444:
! 445: * Makefile: *** empty log message ***
! 446:
! 447: * setup.iss.in: Summary: some new subdirs
! 448:
! 449: * imach.c: *** empty log message ***
! 450:
! 451: * setup.iss.in:
! 452: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
! 453:
! 454: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
! 455:
! 456: * imach.c: *** empty log message ***
! 457:
! 458: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
! 459:
! 460: * imach.c:
! 461: Summary: 0.98r3 some clarification for graphs on likelihood contributions
! 462:
! 463: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
! 464:
! 465: * imach.c: Summary: Some new graphs of contribution to likelihood
! 466:
! 467: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
! 468:
! 469: * Makefile:
! 470: Summary: Version read from version.h, itself read with cmake
! 471:
! 472: * imach.c: Summary: looking at better estimation of the hessian
! 473:
! 474: Also a better criteria for convergence to the period prevalence And
! 475: therefore adding the number of years needed to converge. (The
! 476: prevalence in any alive state shold sum to one
! 477:
! 478: * Makefile: *** empty log message ***
! 479:
! 480: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
! 481:
! 482: * imach.c:
! 483: Summary: Adding some overall graph on contribution to likelihood. Might change
! 484:
! 485: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
! 486:
! 487: * Makefile: *** empty log message ***
! 488:
! 489: * imach.c: Summary: 0.98r0
! 490:
! 491: - Some new graphs like survival functions
! 492: - Some bugs fixed like model=1+age+V2.
! 493:
! 494: * ChangeLog, Makefile: Summary: 0.98r0
! 495:
! 496: * CMakeLists.txt: Summary: Some tests for setup.iss
! 497:
! 498: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
! 499:
! 500: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
! 501:
! 502: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
! 503:
! 504: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
! 505:
! 506: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
! 507:
! 508: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
! 509:
! 510: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
! 511:
! 512: * imach.c (Module): Merging 1.61 to 1.162
! 513:
! 514: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
! 515:
! 516: * prevlim.h (Module):
! 517:
! 518: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
! 519:
! 520: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
! 521: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
! 522:
! 523: 2010-04-29 brouard <brouard@ined.fr>
! 524:
! 525: * imach.c (Module): Checking covariates for more complex models
! 526: than V1+V2. A lot of change to be done. Unstable.
! 527:
! 528: 2010-04-26 brouard <brouard@ined.fr>
! 529:
! 530: * imach.c (Module): merging some libgsl code. Fixing computation
! 531: of likelione (using inter/intrapolation if mle = 0) in order to
! 532: get same likelihood as if mle=1.
! 533: Some cleaning of code and comments added.
! 534:
! 535: 2009-10-29 brouard <brouard@ined.fr>
! 536:
! 537: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
! 538:
! 539: 2006-06-30 Brouard Nicolas <brouard@localhost>
! 540:
! 541: * imach.c (Module): Clarifications on computing e.j
! 542:
! 543: 2006-04-28 Brouard Nicolas <brouard@localhost>
! 544:
! 545: * imach.c (Module): Yes the sum of survivors was wrong since
! 546: imach-114 because nhstepm was no more computed in the age
! 547: loop. Now we define nhstepma in the age loop.
! 548: (Module): In order to speed up (in case of numerous covariates) we
! 549: compute health expectancies (without variances) in a first step
! 550: and then all the health expectancies with variances or standard
! 551: deviation (needs data from the Hessian matrices) which slows the
! 552: computation.
! 553: In the future we should be able to stop the program is only health
! 554: expectancies and graph are needed without standard deviations.
! 555:
! 556: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 557:
! 558: * imach.iss (Module):
! 559:
! 560: * imach.c (Module): bugs in evsi + population file added in htm output file
! 561:
! 562: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 563:
! 564: * imach.c (Module):
! 565:
! 566: 2006-03-20 Brouard Nicolas <brouard@localhost>
! 567:
! 568: * imach.c (Module): <title> changed, corresponds to .htm file
! 569: name. <head> headers where missing.
! 570:
! 571: * Makefile (Module): 0.98g
! 572:
! 573: * imach.c (Module): Weights can have a decimal point as for
! 574: English (a comma might work with a correct LC_NUMERIC environment,
! 575: otherwise the weight is truncated).
! 576: Modification of warning when the covariates values are not 0 or
! 577: 1.
! 578: Version 0.98g
! 579:
! 580: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 581:
! 582: * imach.c (Module): Comments concerning covariates added
! 583:
! 584: * noreg-setup.iss (Module): Version 0.98f
! 585:
! 586: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
! 587:
! 588: * imach.c (Module): refinements in the computation of lli if
! 589: status=-2 in order to have more reliable computation if stepm is
! 590: not 1 month. Version 0.98f
! 591:
! 592: 2006-03-15 Brouard Nicolas <brouard@localhost>
! 593:
! 594: * imach.c (Module): Bug if status = -2, the loglikelihood was
! 595: computed as likelihood omitting the logarithm. Version O.98e
! 596:
! 597: 2006-03-14 Brouard Nicolas <brouard@localhost>
! 598:
! 599: * imach.c (Module): varevsij Comments added explaining the second
! 600: table of variances if popbased=1 .
! 601: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
! 602: (Module): Function pstamp added
! 603: (Module): Version 0.98d
! 604:
! 605: 2006-03-06 Brouard Nicolas <brouard@localhost>
! 606:
! 607: * imach.c (Module): Variance-covariance wrong links and
! 608: varian-covariance of ej. is needed (Saito).
! 609:
! 610: 2006-02-27 Brouard Nicolas <brouard@localhost>
! 611:
! 612: * imach.c (Module): One freematrix added in mlikeli!
! 613:
! 614: 2006-02-26 Brouard Nicolas <brouard@localhost>
! 615:
! 616: * imach.c (Module): Some improvements in processing parameter
! 617: filename with strsep.
! 618:
! 619: 2006-02-24 Brouard Nicolas <brouard@localhost>
! 620:
! 621: * imach.c (Module): Memory leaks checks with valgrind and:
! 622: datafile was not closed, some imatrix were not freed and on matrix
! 623: allocation too.
! 624:
! 625: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 626:
! 627: * strsep.c (Module): Inclusion because not in mingw32!!!
! 628:
! 629: * setup.iss.in (Module): IMACHSETUPVERSION added
! 630:
! 631: * noreg-setup.iss (Module): added to cvs tree
! 632:
! 633: * Makefile (Module): IMACHSETUPVERSION added
! 634:
! 635: 2006-01-30 BROUARD Nicolas <brouard@localhost>
! 636:
! 637: * Makefile (Module, Module): Latest Makefile
! 638:
! 639: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
! 640:
! 641: 2006-01-27 BROUARD Nicolas <brouard@localhost>
! 642:
! 643: * noreg-setup.iss (Module): ADDED
! 644:
! 645: 2006-01-24 BROUARD Nicolas <brouard@localhost>
! 646:
! 647: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
! 648:
! 649: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
! 650:
! 651: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
! 652:
! 653: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
! 654:
! 655: 2005-09-30 <lievre@PC_00595>
! 656:
! 657: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
! 658: (Module): If the status is missing at the last wave but we know
! 659: that the person is alive, then we can code his/her status as -2
! 660: (instead of missing=-1 in earlier versions) and his/her
! 661: contributions to the likelihood is 1 - Prob of dying from last
! 662: health status (= 1-p13= p11+p12 in the easiest case of somebody in
! 663: the healthy state at last known wave). Version is 0.98
! 664:
! 665: 2004-05-20 Brouard Nicolas <brouard@localhost>
! 666:
! 667: * imach.c (Repository):
! 668: Agnes added a direct estimation of mortality (without the need of
! 669: computing period prevalence and differential mortality). Thus here
! 670: is version 0.97a which has been distributed to some people at
! 671: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
! 672: mortality using covariates is not done today. Estimating direct
! 673: mortality is a very different process because it doesn't need
! 674: interpolation because it is easy to get the lx from the force of
! 675: the mortality mux in the simplest case as for a Gompertz (log mux
! 676: = a + b*x . But we have been able to incorporate the new code
! 677: within former imach program (0.96d) without deteriorating too much
! 678: the understanding of the program.
! 679:
! 680: 2003-06-25 <brouard@BROUARD>
! 681:
! 682: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
! 683: exist so I changed back to asctime which exists.
! 684: (Module): Version 0.96b
! 685:
! 686: 2003-06-24 <brouard@BROUARD>
! 687:
! 688: * imach.c (Module): Some bugs corrected for windows. Also, when
! 689: mle=-1 a template is output in file "or"mypar.txt with the design
! 690: of the covariance matrix to be input.
! 691:
! 692: 2003-06-25 Brouard Nicolas <brouard@homebrou>
! 693:
! 694: * imach.c (Repository): Duplicated warning errors corrected.
! 695: (Repository): Elapsed time after each iteration is now output. It
! 696: helps to forecast when convergence will be reached. Elapsed time
! 697: is stamped in powell. We created a new html file for the graphs
! 698: concerning matrix of covariance. It has extension -cov.htm.
! 699:
! 700: 2003-06-23 Brouard Nicolas <brouard@homebrou>
! 701:
! 702: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
! 703:
! 704: 2003-06-18 Brouard Nicolas <brouard@homebrou>
! 705:
! 706: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
! 707:
! 708: 2003-06-17 Brouard Nicolas <brouard@homebrou>
! 709:
! 710:
! 711: * imach.c (Repository): Check when date of death was earlier that
! 712: current date of interview. It may happen when the death was just
! 713: prior to the death. In this case, dh was negative and likelihood
! 714: was wrong (infinity). We still send an "Error" but patch by
! 715: assuming that the date of death was just one stepm after the
! 716: interview.
! 717: (Repository): Because some people have very long ID (first column)
! 718: we changed int to long in num[] and we added a new lvector for
! 719: memory allocation. But we also truncated to 8 characters (left
! 720: truncation)
! 721:
! 722: (Repository): No more line truncation errors.
! 723:
! 724: 2003-06-14 Brouard Nicolas <brouard@homebrou>
! 725:
! 726: * imach.c (Repository): Add of a routine likelione (likelihood
! 727: only once) which prints on a text file
! 728: (ilk) the contributions to the likelihood for each
! 729: individual/wave.
! 730:
! 731: 2003-06-13 Brouard Nicolas <brouard@homebrou>
! 732: * imach.c (Repository): Replace "freqsummary" at a correct
! 733: place. It differs from routine "prevalence" which may be called
! 734: many times. Probs is memory consuming and must be used with
! 735: parcimony.
! 736:
! 737: 2003-06-17 <brouard@BROUARD>
! 738:
! 739: * timeval.h (Module): Added included file to make use of
! 740: gettimeofday working on win32 with cygwin.
! 741:
! 742: 2003-05-16 Brouard Nicolas <brouard@brouard>
! 743: * imach.c (Module): Insert of a warning if the delay between two
! 744: waves is negative.
! 745:
! 746: * imach.c (Module):
! 747:
! 748: 2003-05-03 <brouard@BROUARD>
! 749:
! 750: * imach.c: Some cleaning
! 751:
! 752: 2003-03-28 <brouard@BROUARD>
! 753: * imach.c (Module): In version up to 0.92 likelihood was computed
! 754: as if date of death was unknown. Death was treated as any other
! 755: health state: the date of the interview describes the actual state
! 756: and not the date of a change in health state. The former idea was
! 757: to consider that at each interview the state was recorded
! 758: (healthy, disable or death) and IMaCh was corrected; but when we
! 759: introduced the exact date of death then we should have modified
! 760: the contribution of an exact death to the likelihood. This new
! 761: contribution is smaller and very dependent of the step unit
! 762: stepm. It is no more the probability to die between last interview
! 763: and month of death but the probability to survive from last
! 764: interview up to one month before death multiplied by the
! 765: probability to die within a month. Thanks to Chris
! 766: Jackson for correcting this bug. Former versions increased
! 767: mortality artificially. The bad side is that we add another loop
! 768: which slows down the processing. The difference can be up to 10%
! 769: lower mortality.
! 770:
! 771: 2002-05-30 <brouard@BROUARD>
! 772: *
! 773: * imach.c (Module): Add correlation matrix of one-step
! 774: probabilities and covariance matrix
! 775:
! 776:
! 777:
! 778:
! 779:
! 780: =======
1.54 brouard 781: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
782:
783: * r29 W and not sqrt(Wald)
784:
785: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
786:
787: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
788:
789: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
790:
791: * imach.c: With products of covariates (age or dummies or
792: quantitatives), estimates of parameters were good but when
793: estimating variances the positions of newly created covariates
794: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
795:
796: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
797:
798: * imach.c (Module): Some attempts to find a bug of wrong estimates
799: of confidencce intervals with product in the equation modelC
800:
801: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
802:
803: * imach.c (Module): Some minor improvements
804:
805: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
806:
807: * imach.c (Module): Adding link to text data files
808:
809: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
810:
811: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
812:
813: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
814:
815: * imach.c (Module): Fixed covariates (dummy or quantitative)
816: with missing values have never been allowed but are ERRORS and
817: program quits. Standard deviations of fixed covariates were
818: wrongly computed. Mean and standard deviations of time varying
819: covariates are still not computed.
820:
821: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
822:
823: * 99r25 Improvements in fixing discrepancies between covariates
824: missing in result line but in model.
825:
826: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
827: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
828:
829: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
830:
831: * ./ (Module): Fixed bug on result:
832:
833: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
834:
835: * imach.c (Module): Fix bug on quitting after result lines!
836: (Module): Version 0.99r21
837:
838: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
839:
840: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
841:
842:
843: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
844:
845: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
846:
847: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
848:
849: * (Module): imach.c Update mle=-3 (for computing Life expectancy
850: and life table from the data without any state)
851:
852: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
853:
854: * version.h: Summary: version 0.99.r19
855:
856: * imach.c: Summary: Projection syntax simplified
857: We can now start projections, forward or backward, from the mean date
858: of inteviews up to or down to a number of years of projection:
859: prevforecast=1 yearsfproj=15.3 mobil_average=0
860: or
861: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
862: or
863: prevbackcast=1 yearsbproj=12.3 mobil_average=1
864: or
865: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
866:
867: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
868:
869: * imach.c: Summary: doxygen tex bug
870:
871: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
872:
873: * imach.c: Summary: There was some wrong lines added
874:
875: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
876:
877: * Makefile, imach.c: *** empty log message ***
878:
879: * ChangeLog: Summary: C=
880:
881: * imach.c: Summary: Some updates
882:
883: * imach.c: Summary: Before ncovmax
884:
885: * version.h: *** empty log message ***
886:
887: * imach.c: Summary: 0.99r18 unlimited number of individuals
888: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
889:
890: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
891:
892: * imach.c: Summary: Bug for young ages (<-30) will be in r17
893:
894: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
895:
896: * Makefile: Summary: 0.99r16
897:
898: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
899:
900: * imach.c: Summary: Some bugs fixed
901:
902: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
903:
904: * imach.c: Summary: Bug for young ages (<-30) will be in r17
905:
906: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
907:
908: * imach.c: Summary: Some bugs fixed
909:
910: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
911:
912: * imach.c:
913: Summary: Bug fixed by providing frequencies only for non missing covariates
914:
915: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
916:
917: * imach.c: Summary: some minor bugs
918:
919: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
920:
921: * README.txt: *** empty log message ***
922:
923: * imach.c: Summary: Some bugs fixed, valgrind tested
924:
925: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
926:
927: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
928:
929: * imach.c:
930: Summary: Computing mean and stdeviation of fixed quantitative variables
931:
932: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
933:
934: * imach.c: Summary: Some minor bugs fixed
935:
936: * version.h: *** empty log message ***
937:
938: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
939:
940: * imach.c: *** empty log message ***
941:
942: * imach.c: Summary: Adding second argument for quitting
943:
944: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
945:
946: * Makefile, README.txt, imach.c: Summary: 0.99r15
947: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
948:
949: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
950:
951: * imach.c: Summary: temporary working
952:
953: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
954:
955: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
956:
957: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
958:
959: * imach.c: Summary: BOM files can be read now
960:
961: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
962:
963: * imach.c: Summary: Graphs improvements
964:
965: * imach.c: Summary: Saito's color
966:
967: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
968:
969: * imach.c: Summary: Version 0.99r14
970:
971: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
972:
973: * imach.c: Summary: More documentation on projections
974:
975: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
976:
977: * imach.c: Summary: Some bug with rint
978:
979: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
980:
981: * imach.c: *** empty log message ***
982:
983: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
984:
985: * imach.c: Summary: Code into subroutine, cleanings
986:
987: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
988:
989: * imach.c:
990: Summary: backprojection and confidence intervals of backprevalence
991:
992: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
993:
994: * imach.c: Summary: temporary save for backprojection
995:
996: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
997:
998: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
999:
1000: * imach.c: Summary: imach 0.99r13 Some bugs fixed
1001:
1002: * imach.c: Summary: Labels in graphs
1003:
1004: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1005:
1006: * imach.c: Summary: to save
1007:
1008: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1009:
1010: * imach.c: *** empty log message ***
1011:
1012: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1013:
1014: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
1015:
1016: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1017:
1018: * imach.c: Summary: Gnuplot indexations fixed (humm)
1019:
1020: * imach.c:
1021: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
1022:
1023: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1024:
1025: * imach.c: Summary: Version 0.99r12
1026: Some cleanings, conformed with updated documentation.
1027:
1028: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1029:
1030: * version.h: *** empty log message ***
1031:
1032: * version.h: Summary:0.99r11
1033:
1034: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1035:
1036: * imach.c: Summary: Temp
1037:
1038: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1039:
1040: * imach.c: Summary: Temporary
1041:
1042: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1043:
1044: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
1045:
1046: * imach.c: Summary: Fixing data parameter line
1047:
1048: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1049:
1050: * imach.c: Summary: 0.99 in progress
1051:
1052: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1053:
1054: * imach.c: *** empty log message ***
1055:
1056: * imach.c: Summary: not working
1057:
1058: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1059:
1060: * imach.c: Summary: continue
1061:
1062: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1063:
1064: * imach.c: Summary: Starting values from frequencies
1065:
1066: * imach.c: *** empty log message ***
1067:
1068: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1069:
1070: * imach.c: *** empty log message ***
1071:
1072: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1073:
1074: * imach.c: Summary: Fixing a lots
1075:
1076: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1077:
1078: * imach.c: Summary: gnuplot problem in Back projection to fix
1079:
1080: * imach.c: Summary: Better
1081:
1082: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1083:
1084: * imach.c:
1085: Summary: Improvement in Powell output in order to copy and paste
1086:
1087: * imach.c: Summary: Starting tests of 0.99
1088:
1089: * imach.c: Summary: to valgrind
1090:
1091: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1092:
1093: * imach.c: *** empty log message ***
1094:
1095: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1096:
1097: * imach.c: *** empty log message ***
1098:
1099: * imach.c: Summary: not working
1100:
1101: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1102:
1103: * imach.c: Summary: not working
1104:
1105: * imach.c: Summary: Not working
1106:
1107: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1108:
1109: * imach.c: Summary: Completing for func too
1110:
1111: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1112:
1113: * imach.c: Summary: Fixing some arrays, still debugging
1114:
1115: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1116:
1117: * imach.c:
1118: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
1119:
1120: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1121:
1122: * imach.c: Summary: temp
1123:
1124: * imach.c: Summary: saving but not running
1125:
1126: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1127:
1128: * imach.c: Summary: Fixes
1129:
1130: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1131:
1132: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
1133:
1134: * setup.iss, Makefile, version.h: *** empty log message ***
1135:
1136: * imach.c: Summary: temporary
1137:
1138: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1139:
1140: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
1141:
1142: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1143:
1144: * imach.c: Summary: minor bug
1145:
1146: * imach.c: Summary: 0.99r2
1147:
1148: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1149:
1150: * imach.c: *** empty log message ***
1151:
1152: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1153:
1154: * imach.c: Summary: 0.99 Back projections
1155:
1156: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1157:
1158: * imach.c: Summary: Experimental backcast
1159:
1160: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1161:
1162: * imach.c: Summary: 0.98r4 Warning and status=-2
1163:
1164: Version 0.98r4 is now:
1165: - displaying an error when status is -1, date of interview unknown and date of death known;
1166: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
1167: Older changes concerning s=-2, dating from 2005 have been supersed.
1168:
1169: * Makefile: *** empty log message ***
1170:
1171: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1172:
1173: * Makefile: *** empty log message ***
1174:
1175: * imach.c: Summary: 0.98r4 working
1176:
1177: * Makefile: Summary: linuxrpm added
1178:
1179: * Makefile: *** empty log message ***
1180:
1181: * imach.c: Summary: temporary not working
1182:
1183: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1184:
1185: * imach.c: Summary: 0.98r4
1186:
1187: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1188:
1189: * Makefile: *** empty log message ***
1190:
1191: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1192:
1193: * Makefile:
1194: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
1195:
1196: * imach.c: Summary: minor typo
1197:
1198: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
1199:
1200: Author: Nicolas Brouard
1201:
1202: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1203:
1204: * imach.c: Summary: Start working on projected prevalences
1205:
1206: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1207:
1208: * imach.c: Summary: Adding ftolpl parameter
1209: Author: N Brouard
1210:
1211: We had difficulties to get smoothed confidence intervals. It was due
1212: to the period prevalence which wasn't computed accurately. The inner
1213: parameter ftolpl is now an outer parameter of the .imach parameter
1214: file after estepm. If ftolpl is small 1.e-4 and estepm too,
1215: computation are long.
1216:
1217: * version.h: *** empty log message ***
1218:
1219: * imach.c: Summary: temporary
1220:
1221: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1222:
1223: * Makefile: *** empty log message ***
1224:
1225: * setup.iss.in: Summary: some new subdirs
1226:
1227: * imach.c: *** empty log message ***
1228:
1229: * setup.iss.in:
1230: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
1231:
1232: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1233:
1234: * imach.c: *** empty log message ***
1235:
1236: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1237:
1238: * imach.c:
1239: Summary: 0.98r3 some clarification for graphs on likelihood contributions
1240:
1241: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1242:
1243: * imach.c: Summary: Some new graphs of contribution to likelihood
1244:
1245: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1246:
1247: * Makefile:
1248: Summary: Version read from version.h, itself read with cmake
1249:
1250: * imach.c: Summary: looking at better estimation of the hessian
1251:
1252: Also a better criteria for convergence to the period prevalence And
1253: therefore adding the number of years needed to converge. (The
1254: prevalence in any alive state shold sum to one
1255:
1256: * Makefile: *** empty log message ***
1257:
1258: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1259:
1260: * imach.c:
1261: Summary: Adding some overall graph on contribution to likelihood. Might change
1262:
1263: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1264:
1265: * Makefile: *** empty log message ***
1266:
1267: * imach.c: Summary: 0.98r0
1268:
1269: - Some new graphs like survival functions
1270: - Some bugs fixed like model=1+age+V2.
1271:
1272: * ChangeLog, Makefile: Summary: 0.98r0
1273:
1274: * CMakeLists.txt: Summary: Some tests for setup.iss
1275:
1276: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
1277:
1278: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
1279:
1280: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
1281:
1282: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
1283:
1284: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
1285:
1286: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
1287:
1288: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
1289:
1290: * imach.c (Module): Merging 1.61 to 1.162
1291:
1292: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
1293:
1294: * prevlim.h (Module):
1295:
1296: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
1297:
1298: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
1299: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
1300:
1301: 2010-04-29 brouard <brouard@ined.fr>
1302:
1303: * imach.c (Module): Checking covariates for more complex models
1304: than V1+V2. A lot of change to be done. Unstable.
1305:
1306: 2010-04-26 brouard <brouard@ined.fr>
1307:
1308: * imach.c (Module): merging some libgsl code. Fixing computation
1309: of likelione (using inter/intrapolation if mle = 0) in order to
1310: get same likelihood as if mle=1.
1311: Some cleaning of code and comments added.
1312:
1313: 2009-10-29 brouard <brouard@ined.fr>
1314:
1315: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
1316:
1317: 2006-06-30 Brouard Nicolas <brouard@localhost>
1318:
1319: * imach.c (Module): Clarifications on computing e.j
1320:
1321: 2006-04-28 Brouard Nicolas <brouard@localhost>
1322:
1323: * imach.c (Module): Yes the sum of survivors was wrong since
1324: imach-114 because nhstepm was no more computed in the age
1325: loop. Now we define nhstepma in the age loop.
1326: (Module): In order to speed up (in case of numerous covariates) we
1327: compute health expectancies (without variances) in a first step
1328: and then all the health expectancies with variances or standard
1329: deviation (needs data from the Hessian matrices) which slows the
1330: computation.
1331: In the future we should be able to stop the program is only health
1332: expectancies and graph are needed without standard deviations.
1333:
1334: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1335:
1336: * imach.iss (Module):
1337:
1338: * imach.c (Module): bugs in evsi + population file added in htm output file
1339:
1340: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1341:
1342: * imach.c (Module):
1343:
1344: 2006-03-20 Brouard Nicolas <brouard@localhost>
1345:
1346: * imach.c (Module): <title> changed, corresponds to .htm file
1347: name. <head> headers where missing.
1348:
1349: * Makefile (Module): 0.98g
1350:
1351: * imach.c (Module): Weights can have a decimal point as for
1352: English (a comma might work with a correct LC_NUMERIC environment,
1353: otherwise the weight is truncated).
1354: Modification of warning when the covariates values are not 0 or
1355: 1.
1356: Version 0.98g
1357:
1358: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1359:
1360: * imach.c (Module): Comments concerning covariates added
1361:
1362: * noreg-setup.iss (Module): Version 0.98f
1363:
1364: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
1365:
1366: * imach.c (Module): refinements in the computation of lli if
1367: status=-2 in order to have more reliable computation if stepm is
1368: not 1 month. Version 0.98f
1369:
1370: 2006-03-15 Brouard Nicolas <brouard@localhost>
1371:
1372: * imach.c (Module): Bug if status = -2, the loglikelihood was
1373: computed as likelihood omitting the logarithm. Version O.98e
1374:
1375: 2006-03-14 Brouard Nicolas <brouard@localhost>
1376:
1377: * imach.c (Module): varevsij Comments added explaining the second
1378: table of variances if popbased=1 .
1379: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
1380: (Module): Function pstamp added
1381: (Module): Version 0.98d
1382:
1383: 2006-03-06 Brouard Nicolas <brouard@localhost>
1384:
1385: * imach.c (Module): Variance-covariance wrong links and
1386: varian-covariance of ej. is needed (Saito).
1387:
1388: 2006-02-27 Brouard Nicolas <brouard@localhost>
1389:
1390: * imach.c (Module): One freematrix added in mlikeli!
1391:
1392: 2006-02-26 Brouard Nicolas <brouard@localhost>
1393:
1394: * imach.c (Module): Some improvements in processing parameter
1395: filename with strsep.
1396:
1397: 2006-02-24 Brouard Nicolas <brouard@localhost>
1398:
1399: * imach.c (Module): Memory leaks checks with valgrind and:
1400: datafile was not closed, some imatrix were not freed and on matrix
1401: allocation too.
1402:
1403: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1404:
1405: * strsep.c (Module): Inclusion because not in mingw32!!!
1406:
1407: * setup.iss.in (Module): IMACHSETUPVERSION added
1408:
1409: * noreg-setup.iss (Module): added to cvs tree
1410:
1411: * Makefile (Module): IMACHSETUPVERSION added
1412:
1413: 2006-01-30 BROUARD Nicolas <brouard@localhost>
1414:
1415: * Makefile (Module, Module): Latest Makefile
1416:
1417: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
1418:
1419: 2006-01-27 BROUARD Nicolas <brouard@localhost>
1420:
1421: * noreg-setup.iss (Module): ADDED
1422:
1423: 2006-01-24 BROUARD Nicolas <brouard@localhost>
1424:
1425: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
1426:
1427: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
1428:
1429: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
1430:
1431: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
1432:
1433: 2005-09-30 <lievre@PC_00595>
1434:
1435: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1436: (Module): If the status is missing at the last wave but we know
1437: that the person is alive, then we can code his/her status as -2
1438: (instead of missing=-1 in earlier versions) and his/her
1439: contributions to the likelihood is 1 - Prob of dying from last
1440: health status (= 1-p13= p11+p12 in the easiest case of somebody in
1441: the healthy state at last known wave). Version is 0.98
1442:
1443: 2004-05-20 Brouard Nicolas <brouard@localhost>
1444:
1445: * imach.c (Repository):
1446: Agnes added a direct estimation of mortality (without the need of
1447: computing period prevalence and differential mortality). Thus here
1448: is version 0.97a which has been distributed to some people at
1449: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
1450: mortality using covariates is not done today. Estimating direct
1451: mortality is a very different process because it doesn't need
1452: interpolation because it is easy to get the lx from the force of
1453: the mortality mux in the simplest case as for a Gompertz (log mux
1454: = a + b*x . But we have been able to incorporate the new code
1455: within former imach program (0.96d) without deteriorating too much
1456: the understanding of the program.
1457:
1458: 2003-06-25 <brouard@BROUARD>
1459:
1460: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
1461: exist so I changed back to asctime which exists.
1462: (Module): Version 0.96b
1463:
1464: 2003-06-24 <brouard@BROUARD>
1465:
1466: * imach.c (Module): Some bugs corrected for windows. Also, when
1467: mle=-1 a template is output in file "or"mypar.txt with the design
1468: of the covariance matrix to be input.
1469:
1470: 2003-06-25 Brouard Nicolas <brouard@homebrou>
1471:
1472: * imach.c (Repository): Duplicated warning errors corrected.
1473: (Repository): Elapsed time after each iteration is now output. It
1474: helps to forecast when convergence will be reached. Elapsed time
1475: is stamped in powell. We created a new html file for the graphs
1476: concerning matrix of covariance. It has extension -cov.htm.
1477:
1478: 2003-06-23 Brouard Nicolas <brouard@homebrou>
1479:
1480: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
1481:
1482: 2003-06-18 Brouard Nicolas <brouard@homebrou>
1483:
1484: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
1485:
1486: 2003-06-17 Brouard Nicolas <brouard@homebrou>
1487:
1488:
1489: * imach.c (Repository): Check when date of death was earlier that
1490: current date of interview. It may happen when the death was just
1491: prior to the death. In this case, dh was negative and likelihood
1492: was wrong (infinity). We still send an "Error" but patch by
1493: assuming that the date of death was just one stepm after the
1494: interview.
1495: (Repository): Because some people have very long ID (first column)
1496: we changed int to long in num[] and we added a new lvector for
1497: memory allocation. But we also truncated to 8 characters (left
1498: truncation)
1499:
1500: (Repository): No more line truncation errors.
1501:
1502: 2003-06-14 Brouard Nicolas <brouard@homebrou>
1503:
1504: * imach.c (Repository): Add of a routine likelione (likelihood
1505: only once) which prints on a text file
1506: (ilk) the contributions to the likelihood for each
1507: individual/wave.
1508:
1509: 2003-06-13 Brouard Nicolas <brouard@homebrou>
1510: * imach.c (Repository): Replace "freqsummary" at a correct
1511: place. It differs from routine "prevalence" which may be called
1512: many times. Probs is memory consuming and must be used with
1513: parcimony.
1514:
1515: 2003-06-17 <brouard@BROUARD>
1516:
1517: * timeval.h (Module): Added included file to make use of
1518: gettimeofday working on win32 with cygwin.
1519:
1520: 2003-05-16 Brouard Nicolas <brouard@brouard>
1521: * imach.c (Module): Insert of a warning if the delay between two
1522: waves is negative.
1523:
1524: * imach.c (Module):
1525:
1526: 2003-05-03 <brouard@BROUARD>
1527:
1528: * imach.c: Some cleaning
1529:
1530: 2003-03-28 <brouard@BROUARD>
1531: * imach.c (Module): In version up to 0.92 likelihood was computed
1532: as if date of death was unknown. Death was treated as any other
1533: health state: the date of the interview describes the actual state
1534: and not the date of a change in health state. The former idea was
1535: to consider that at each interview the state was recorded
1536: (healthy, disable or death) and IMaCh was corrected; but when we
1537: introduced the exact date of death then we should have modified
1538: the contribution of an exact death to the likelihood. This new
1539: contribution is smaller and very dependent of the step unit
1540: stepm. It is no more the probability to die between last interview
1541: and month of death but the probability to survive from last
1542: interview up to one month before death multiplied by the
1543: probability to die within a month. Thanks to Chris
1544: Jackson for correcting this bug. Former versions increased
1545: mortality artificially. The bad side is that we add another loop
1546: which slows down the processing. The difference can be up to 10%
1547: lower mortality.
1548:
1549: 2002-05-30 <brouard@BROUARD>
1550: *
1551: * imach.c (Module): Add correlation matrix of one-step
1552: probabilities and covariance matrix
1553:
1554:
1555:
1556:
1557:
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