Annotation of imach/src/ChangeLog, revision 1.56
1.56 ! brouard 1: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Version 0.99r33 A lot of changes in
! 4: reassigning covariates: my first idea was that people will always
! 5: use the first covariate V1 into the model but in fact they are
! 6: producing data with many covariates and can use an equation model
! 7: with some of the covariate; it means that in a model V2+V3 instead
! 8: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
! 9: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
! 10: the equation model is restricted to two variables only (V2, V3)
! 11: and the combination for V2 should be codtabm(k,1) instead of
! 12: (codtabm(k,2), and the code should be
! 13: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
! 14: made. All of these should be simplified once a day like we did in
! 15: hpxij() for example by using precov[nres] which is computed in
! 16: decoderesult for each nres of each resultline. Loop should be done
! 17: on the equation model globally by distinguishing only product with
! 18: age (which are changing with age) and no more on type of
! 19: covariates, single dummies, single covariates.
! 20:
! 21: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
! 22:
! 23: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
! 24:
! 25: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
! 26:
! 27: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
! 28:
1.55 brouard 29: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
30:
31: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
32: coredumped, revealed by Feiuno, thank you.
33:
34: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
35:
36: * imach.c (Module): Adding the Wald tests from the log to the main
37: htm for better display of the maximum likelihood estimators.
38:
39: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
40:
41: * imach.c: With products of covariates (age or dummies or
42: quantitatives), estimates of parameters were good but when
43: estimating variances the positions of newly created covariates
44: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
45:
46: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
47:
48: * imach.c (Module): Some attempts to find a bug of wrong estimates
49: of confidencce intervals with product in the equation modelC
50:
51: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
52:
53: * imach.c (Module): Some minor improvements
54:
55: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
56:
57: * imach.c (Module): Adding link to text data files
58:
59: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
60:
61: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
62:
63: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
64:
65: * imach.c (Module): Fixed covariates (dummy or quantitative)
66: with missing values have never been allowed but are ERRORS and
67: program quits. Standard deviations of fixed covariates were
68: wrongly computed. Mean and standard deviations of time varying
69: covariates are still not computed.
70:
71: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
72:
73: * 99r25 Improvements in fixing discrepancies between covariates
74: missing in result line but in model.
75:
76: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
77: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
78:
79: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
80:
81: * ./ (Module): Fixed bug on result:
82:
83: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
84:
85: * imach.c (Module): Fix bug on quitting after result lines!
86: (Module): Version 0.99r21
87:
88: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
89:
90: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
91:
92:
93: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
94:
95: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
96:
97: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
98:
99: * (Module): imach.c Update mle=-3 (for computing Life expectancy
100: and life table from the data without any state)
101:
102: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
103:
104: * version.h: Summary: version 0.99.r19
105:
106: * imach.c: Summary: Projection syntax simplified
107: We can now start projections, forward or backward, from the mean date
108: of inteviews up to or down to a number of years of projection:
109: prevforecast=1 yearsfproj=15.3 mobil_average=0
110: or
111: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
112: or
113: prevbackcast=1 yearsbproj=12.3 mobil_average=1
114: or
115: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
116:
117: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
118:
119: * imach.c: Summary: doxygen tex bug
120:
121: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
122:
123: * imach.c: Summary: There was some wrong lines added
124:
125: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
126:
127: * Makefile, imach.c: *** empty log message ***
128:
129: * ChangeLog: Summary: C=
130:
131: * imach.c: Summary: Some updates
132:
133: * imach.c: Summary: Before ncovmax
134:
135: * version.h: *** empty log message ***
136:
137: * imach.c: Summary: 0.99r18 unlimited number of individuals
138: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
139:
140: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
141:
142: * imach.c: Summary: Bug for young ages (<-30) will be in r17
143:
144: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
145:
146: * Makefile: Summary: 0.99r16
147:
148: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
149:
150: * imach.c: Summary: Some bugs fixed
151:
152: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
153:
154: * imach.c: Summary: Bug for young ages (<-30) will be in r17
155:
156: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
157:
158: * imach.c: Summary: Some bugs fixed
159:
160: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
161:
162: * imach.c:
163: Summary: Bug fixed by providing frequencies only for non missing covariates
164:
165: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
166:
167: * imach.c: Summary: some minor bugs
168:
169: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
170:
171: * README.txt: *** empty log message ***
172:
173: * imach.c: Summary: Some bugs fixed, valgrind tested
174:
175: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
176:
177: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
178:
179: * imach.c:
180: Summary: Computing mean and stdeviation of fixed quantitative variables
181:
182: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
183:
184: * imach.c: Summary: Some minor bugs fixed
185:
186: * version.h: *** empty log message ***
187:
188: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
189:
190: * imach.c: *** empty log message ***
191:
192: * imach.c: Summary: Adding second argument for quitting
193:
194: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
195:
196: * Makefile, README.txt, imach.c: Summary: 0.99r15
197: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
198:
199: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
200:
201: * imach.c: Summary: temporary working
202:
203: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
204:
205: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
206:
207: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
208:
209: * imach.c: Summary: BOM files can be read now
210:
211: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
212:
213: * imach.c: Summary: Graphs improvements
214:
215: * imach.c: Summary: Saito's color
216:
217: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
218:
219: * imach.c: Summary: Version 0.99r14
220:
221: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
222:
223: * imach.c: Summary: More documentation on projections
224:
225: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
226:
227: * imach.c: Summary: Some bug with rint
228:
229: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
230:
231: * imach.c: *** empty log message ***
232:
233: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
234:
235: * imach.c: Summary: Code into subroutine, cleanings
236:
237: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
238:
239: * imach.c:
240: Summary: backprojection and confidence intervals of backprevalence
241:
242: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
243:
244: * imach.c: Summary: temporary save for backprojection
245:
246: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
247:
248: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
249:
250: * imach.c: Summary: imach 0.99r13 Some bugs fixed
251:
252: * imach.c: Summary: Labels in graphs
253:
254: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
255:
256: * imach.c: Summary: to save
257:
258: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
259:
260: * imach.c: *** empty log message ***
261:
262: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
263:
264: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
265:
266: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
267:
268: * imach.c: Summary: Gnuplot indexations fixed (humm)
269:
270: * imach.c:
271: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
272:
273: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
274:
275: * imach.c: Summary: Version 0.99r12
276: Some cleanings, conformed with updated documentation.
277:
278: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
279:
280: * version.h: *** empty log message ***
281:
282: * version.h: Summary:0.99r11
283:
284: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
285:
286: * imach.c: Summary: Temp
287:
288: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
289:
290: * imach.c: Summary: Temporary
291:
292: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
293:
294: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
295:
296: * imach.c: Summary: Fixing data parameter line
297:
298: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
299:
300: * imach.c: Summary: 0.99 in progress
301:
302: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
303:
304: * imach.c: *** empty log message ***
305:
306: * imach.c: Summary: not working
307:
308: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
309:
310: * imach.c: Summary: continue
311:
312: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
313:
314: * imach.c: Summary: Starting values from frequencies
315:
316: * imach.c: *** empty log message ***
317:
318: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
319:
320: * imach.c: *** empty log message ***
321:
322: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
323:
324: * imach.c: Summary: Fixing a lots
325:
326: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
327:
328: * imach.c: Summary: gnuplot problem in Back projection to fix
329:
330: * imach.c: Summary: Better
331:
332: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
333:
334: * imach.c:
335: Summary: Improvement in Powell output in order to copy and paste
336:
337: * imach.c: Summary: Starting tests of 0.99
338:
339: * imach.c: Summary: to valgrind
340:
341: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
342:
343: * imach.c: *** empty log message ***
344:
345: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
346:
347: * imach.c: *** empty log message ***
348:
349: * imach.c: Summary: not working
350:
351: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
352:
353: * imach.c: Summary: not working
354:
355: * imach.c: Summary: Not working
356:
357: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
358:
359: * imach.c: Summary: Completing for func too
360:
361: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
362:
363: * imach.c: Summary: Fixing some arrays, still debugging
364:
365: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
366:
367: * imach.c:
368: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
369:
370: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
371:
372: * imach.c: Summary: temp
373:
374: * imach.c: Summary: saving but not running
375:
376: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
377:
378: * imach.c: Summary: Fixes
379:
380: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
381:
382: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
383:
384: * setup.iss, Makefile, version.h: *** empty log message ***
385:
386: * imach.c: Summary: temporary
387:
388: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
389:
390: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
391:
392: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
393:
394: * imach.c: Summary: minor bug
395:
396: * imach.c: Summary: 0.99r2
397:
398: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
399:
400: * imach.c: *** empty log message ***
401:
402: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
403:
404: * imach.c: Summary: 0.99 Back projections
405:
406: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
407:
408: * imach.c: Summary: Experimental backcast
409:
410: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
411:
412: * imach.c: Summary: 0.98r4 Warning and status=-2
413:
414: Version 0.98r4 is now:
415: - displaying an error when status is -1, date of interview unknown and date of death known;
416: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
417: Older changes concerning s=-2, dating from 2005 have been supersed.
418:
419: * Makefile: *** empty log message ***
420:
421: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
422:
423: * Makefile: *** empty log message ***
424:
425: * imach.c: Summary: 0.98r4 working
426:
427: * Makefile: Summary: linuxrpm added
428:
429: * Makefile: *** empty log message ***
430:
431: * imach.c: Summary: temporary not working
432:
433: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
434:
435: * imach.c: Summary: 0.98r4
436:
437: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
438:
439: * Makefile: *** empty log message ***
440:
441: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
442:
443: * Makefile:
444: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
445:
446: * imach.c: Summary: minor typo
447:
448: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
449:
450: Author: Nicolas Brouard
451:
452: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
453:
454: * imach.c: Summary: Start working on projected prevalences
455:
456: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
457:
458: * imach.c: Summary: Adding ftolpl parameter
459: Author: N Brouard
460:
461: We had difficulties to get smoothed confidence intervals. It was due
462: to the period prevalence which wasn't computed accurately. The inner
463: parameter ftolpl is now an outer parameter of the .imach parameter
464: file after estepm. If ftolpl is small 1.e-4 and estepm too,
465: computation are long.
466:
467: * version.h: *** empty log message ***
468:
469: * imach.c: Summary: temporary
470:
471: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
472:
473: * Makefile: *** empty log message ***
474:
475: * setup.iss.in: Summary: some new subdirs
476:
477: * imach.c: *** empty log message ***
478:
479: * setup.iss.in:
480: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
481:
482: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
483:
484: * imach.c: *** empty log message ***
485:
486: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
487:
488: * imach.c:
489: Summary: 0.98r3 some clarification for graphs on likelihood contributions
490:
491: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
492:
493: * imach.c: Summary: Some new graphs of contribution to likelihood
494:
495: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
496:
497: * Makefile:
498: Summary: Version read from version.h, itself read with cmake
499:
500: * imach.c: Summary: looking at better estimation of the hessian
501:
502: Also a better criteria for convergence to the period prevalence And
503: therefore adding the number of years needed to converge. (The
504: prevalence in any alive state shold sum to one
505:
506: * Makefile: *** empty log message ***
507:
508: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
509:
510: * imach.c:
511: Summary: Adding some overall graph on contribution to likelihood. Might change
512:
513: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
514:
515: * Makefile: *** empty log message ***
516:
517: * imach.c: Summary: 0.98r0
518:
519: - Some new graphs like survival functions
520: - Some bugs fixed like model=1+age+V2.
521:
522: * ChangeLog, Makefile: Summary: 0.98r0
523:
524: * CMakeLists.txt: Summary: Some tests for setup.iss
525:
526: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
527:
528: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
529:
530: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
531:
532: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
533:
534: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
535:
536: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
537:
538: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
539:
540: * imach.c (Module): Merging 1.61 to 1.162
541:
542: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
543:
544: * prevlim.h (Module):
545:
546: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
547:
548: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
549: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
550:
551: 2010-04-29 brouard <brouard@ined.fr>
552:
553: * imach.c (Module): Checking covariates for more complex models
554: than V1+V2. A lot of change to be done. Unstable.
555:
556: 2010-04-26 brouard <brouard@ined.fr>
557:
558: * imach.c (Module): merging some libgsl code. Fixing computation
559: of likelione (using inter/intrapolation if mle = 0) in order to
560: get same likelihood as if mle=1.
561: Some cleaning of code and comments added.
562:
563: 2009-10-29 brouard <brouard@ined.fr>
564:
565: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
566:
567: 2006-06-30 Brouard Nicolas <brouard@localhost>
568:
569: * imach.c (Module): Clarifications on computing e.j
570:
571: 2006-04-28 Brouard Nicolas <brouard@localhost>
572:
573: * imach.c (Module): Yes the sum of survivors was wrong since
574: imach-114 because nhstepm was no more computed in the age
575: loop. Now we define nhstepma in the age loop.
576: (Module): In order to speed up (in case of numerous covariates) we
577: compute health expectancies (without variances) in a first step
578: and then all the health expectancies with variances or standard
579: deviation (needs data from the Hessian matrices) which slows the
580: computation.
581: In the future we should be able to stop the program is only health
582: expectancies and graph are needed without standard deviations.
583:
584: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
585:
586: * imach.iss (Module):
587:
588: * imach.c (Module): bugs in evsi + population file added in htm output file
589:
590: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
591:
592: * imach.c (Module):
593:
594: 2006-03-20 Brouard Nicolas <brouard@localhost>
595:
596: * imach.c (Module): <title> changed, corresponds to .htm file
597: name. <head> headers where missing.
598:
599: * Makefile (Module): 0.98g
600:
601: * imach.c (Module): Weights can have a decimal point as for
602: English (a comma might work with a correct LC_NUMERIC environment,
603: otherwise the weight is truncated).
604: Modification of warning when the covariates values are not 0 or
605: 1.
606: Version 0.98g
607:
608: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
609:
610: * imach.c (Module): Comments concerning covariates added
611:
612: * noreg-setup.iss (Module): Version 0.98f
613:
614: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
615:
616: * imach.c (Module): refinements in the computation of lli if
617: status=-2 in order to have more reliable computation if stepm is
618: not 1 month. Version 0.98f
619:
620: 2006-03-15 Brouard Nicolas <brouard@localhost>
621:
622: * imach.c (Module): Bug if status = -2, the loglikelihood was
623: computed as likelihood omitting the logarithm. Version O.98e
624:
625: 2006-03-14 Brouard Nicolas <brouard@localhost>
626:
627: * imach.c (Module): varevsij Comments added explaining the second
628: table of variances if popbased=1 .
629: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
630: (Module): Function pstamp added
631: (Module): Version 0.98d
632:
633: 2006-03-06 Brouard Nicolas <brouard@localhost>
634:
635: * imach.c (Module): Variance-covariance wrong links and
636: varian-covariance of ej. is needed (Saito).
637:
638: 2006-02-27 Brouard Nicolas <brouard@localhost>
639:
640: * imach.c (Module): One freematrix added in mlikeli!
641:
642: 2006-02-26 Brouard Nicolas <brouard@localhost>
643:
644: * imach.c (Module): Some improvements in processing parameter
645: filename with strsep.
646:
647: 2006-02-24 Brouard Nicolas <brouard@localhost>
648:
649: * imach.c (Module): Memory leaks checks with valgrind and:
650: datafile was not closed, some imatrix were not freed and on matrix
651: allocation too.
652:
653: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
654:
655: * strsep.c (Module): Inclusion because not in mingw32!!!
656:
657: * setup.iss.in (Module): IMACHSETUPVERSION added
658:
659: * noreg-setup.iss (Module): added to cvs tree
660:
661: * Makefile (Module): IMACHSETUPVERSION added
662:
663: 2006-01-30 BROUARD Nicolas <brouard@localhost>
664:
665: * Makefile (Module, Module): Latest Makefile
666:
667: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
668:
669: 2006-01-27 BROUARD Nicolas <brouard@localhost>
670:
671: * noreg-setup.iss (Module): ADDED
672:
673: 2006-01-24 BROUARD Nicolas <brouard@localhost>
674:
675: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
676:
677: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
678:
679: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
680:
681: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
682:
683: 2005-09-30 <lievre@PC_00595>
684:
685: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
686: (Module): If the status is missing at the last wave but we know
687: that the person is alive, then we can code his/her status as -2
688: (instead of missing=-1 in earlier versions) and his/her
689: contributions to the likelihood is 1 - Prob of dying from last
690: health status (= 1-p13= p11+p12 in the easiest case of somebody in
691: the healthy state at last known wave). Version is 0.98
692:
693: 2004-05-20 Brouard Nicolas <brouard@localhost>
694:
695: * imach.c (Repository):
696: Agnes added a direct estimation of mortality (without the need of
697: computing period prevalence and differential mortality). Thus here
698: is version 0.97a which has been distributed to some people at
699: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
700: mortality using covariates is not done today. Estimating direct
701: mortality is a very different process because it doesn't need
702: interpolation because it is easy to get the lx from the force of
703: the mortality mux in the simplest case as for a Gompertz (log mux
704: = a + b*x . But we have been able to incorporate the new code
705: within former imach program (0.96d) without deteriorating too much
706: the understanding of the program.
707:
708: 2003-06-25 <brouard@BROUARD>
709:
710: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
711: exist so I changed back to asctime which exists.
712: (Module): Version 0.96b
713:
714: 2003-06-24 <brouard@BROUARD>
715:
716: * imach.c (Module): Some bugs corrected for windows. Also, when
717: mle=-1 a template is output in file "or"mypar.txt with the design
718: of the covariance matrix to be input.
719:
720: 2003-06-25 Brouard Nicolas <brouard@homebrou>
721:
722: * imach.c (Repository): Duplicated warning errors corrected.
723: (Repository): Elapsed time after each iteration is now output. It
724: helps to forecast when convergence will be reached. Elapsed time
725: is stamped in powell. We created a new html file for the graphs
726: concerning matrix of covariance. It has extension -cov.htm.
727:
728: 2003-06-23 Brouard Nicolas <brouard@homebrou>
729:
730: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
731:
732: 2003-06-18 Brouard Nicolas <brouard@homebrou>
733:
734: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
735:
736: 2003-06-17 Brouard Nicolas <brouard@homebrou>
737:
738:
739: * imach.c (Repository): Check when date of death was earlier that
740: current date of interview. It may happen when the death was just
741: prior to the death. In this case, dh was negative and likelihood
742: was wrong (infinity). We still send an "Error" but patch by
743: assuming that the date of death was just one stepm after the
744: interview.
745: (Repository): Because some people have very long ID (first column)
746: we changed int to long in num[] and we added a new lvector for
747: memory allocation. But we also truncated to 8 characters (left
748: truncation)
749:
750: (Repository): No more line truncation errors.
751:
752: 2003-06-14 Brouard Nicolas <brouard@homebrou>
753:
754: * imach.c (Repository): Add of a routine likelione (likelihood
755: only once) which prints on a text file
756: (ilk) the contributions to the likelihood for each
757: individual/wave.
758:
759: 2003-06-13 Brouard Nicolas <brouard@homebrou>
760: * imach.c (Repository): Replace "freqsummary" at a correct
761: place. It differs from routine "prevalence" which may be called
762: many times. Probs is memory consuming and must be used with
763: parcimony.
764:
765: 2003-06-17 <brouard@BROUARD>
766:
767: * timeval.h (Module): Added included file to make use of
768: gettimeofday working on win32 with cygwin.
769:
770: 2003-05-16 Brouard Nicolas <brouard@brouard>
771: * imach.c (Module): Insert of a warning if the delay between two
772: waves is negative.
773:
774: * imach.c (Module):
775:
776: 2003-05-03 <brouard@BROUARD>
777:
778: * imach.c: Some cleaning
779:
780: 2003-03-28 <brouard@BROUARD>
781: * imach.c (Module): In version up to 0.92 likelihood was computed
782: as if date of death was unknown. Death was treated as any other
783: health state: the date of the interview describes the actual state
784: and not the date of a change in health state. The former idea was
785: to consider that at each interview the state was recorded
786: (healthy, disable or death) and IMaCh was corrected; but when we
787: introduced the exact date of death then we should have modified
788: the contribution of an exact death to the likelihood. This new
789: contribution is smaller and very dependent of the step unit
790: stepm. It is no more the probability to die between last interview
791: and month of death but the probability to survive from last
792: interview up to one month before death multiplied by the
793: probability to die within a month. Thanks to Chris
794: Jackson for correcting this bug. Former versions increased
795: mortality artificially. The bad side is that we add another loop
796: which slows down the processing. The difference can be up to 10%
797: lower mortality.
798:
799: 2002-05-30 <brouard@BROUARD>
800: *
801: * imach.c (Module): Add correlation matrix of one-step
802: probabilities and covariance matrix
803:
804:
805:
806:
807:
808: =======
1.56 ! brouard 809: >>>>>>> 1.55
1.54 brouard 810: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
811:
812: * r29 W and not sqrt(Wald)
813:
814: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
815:
816: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
817:
818: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
819:
820: * imach.c: With products of covariates (age or dummies or
821: quantitatives), estimates of parameters were good but when
822: estimating variances the positions of newly created covariates
823: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
824:
825: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
826:
827: * imach.c (Module): Some attempts to find a bug of wrong estimates
828: of confidencce intervals with product in the equation modelC
829:
830: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
831:
832: * imach.c (Module): Some minor improvements
833:
834: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
835:
836: * imach.c (Module): Adding link to text data files
837:
838: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
839:
840: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
841:
842: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
843:
844: * imach.c (Module): Fixed covariates (dummy or quantitative)
845: with missing values have never been allowed but are ERRORS and
846: program quits. Standard deviations of fixed covariates were
847: wrongly computed. Mean and standard deviations of time varying
848: covariates are still not computed.
849:
850: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
851:
852: * 99r25 Improvements in fixing discrepancies between covariates
853: missing in result line but in model.
854:
855: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
856: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
857:
858: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
859:
860: * ./ (Module): Fixed bug on result:
861:
862: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
863:
864: * imach.c (Module): Fix bug on quitting after result lines!
865: (Module): Version 0.99r21
866:
867: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
868:
869: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
870:
871:
872: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
873:
874: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
875:
876: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
877:
878: * (Module): imach.c Update mle=-3 (for computing Life expectancy
879: and life table from the data without any state)
880:
881: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
882:
883: * version.h: Summary: version 0.99.r19
884:
885: * imach.c: Summary: Projection syntax simplified
886: We can now start projections, forward or backward, from the mean date
887: of inteviews up to or down to a number of years of projection:
888: prevforecast=1 yearsfproj=15.3 mobil_average=0
889: or
890: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
891: or
892: prevbackcast=1 yearsbproj=12.3 mobil_average=1
893: or
894: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
895:
896: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
897:
898: * imach.c: Summary: doxygen tex bug
899:
900: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
901:
902: * imach.c: Summary: There was some wrong lines added
903:
904: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
905:
906: * Makefile, imach.c: *** empty log message ***
907:
908: * ChangeLog: Summary: C=
909:
910: * imach.c: Summary: Some updates
911:
912: * imach.c: Summary: Before ncovmax
913:
914: * version.h: *** empty log message ***
915:
916: * imach.c: Summary: 0.99r18 unlimited number of individuals
917: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
918:
919: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
920:
921: * imach.c: Summary: Bug for young ages (<-30) will be in r17
922:
923: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
924:
925: * Makefile: Summary: 0.99r16
926:
927: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
928:
929: * imach.c: Summary: Some bugs fixed
930:
931: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
932:
933: * imach.c: Summary: Bug for young ages (<-30) will be in r17
934:
935: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
936:
937: * imach.c: Summary: Some bugs fixed
938:
939: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
940:
941: * imach.c:
942: Summary: Bug fixed by providing frequencies only for non missing covariates
943:
944: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
945:
946: * imach.c: Summary: some minor bugs
947:
948: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
949:
950: * README.txt: *** empty log message ***
951:
952: * imach.c: Summary: Some bugs fixed, valgrind tested
953:
954: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
955:
956: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
957:
958: * imach.c:
959: Summary: Computing mean and stdeviation of fixed quantitative variables
960:
961: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
962:
963: * imach.c: Summary: Some minor bugs fixed
964:
965: * version.h: *** empty log message ***
966:
967: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
968:
969: * imach.c: *** empty log message ***
970:
971: * imach.c: Summary: Adding second argument for quitting
972:
973: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
974:
975: * Makefile, README.txt, imach.c: Summary: 0.99r15
976: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
977:
978: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
979:
980: * imach.c: Summary: temporary working
981:
982: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
983:
984: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
985:
986: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
987:
988: * imach.c: Summary: BOM files can be read now
989:
990: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
991:
992: * imach.c: Summary: Graphs improvements
993:
994: * imach.c: Summary: Saito's color
995:
996: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
997:
998: * imach.c: Summary: Version 0.99r14
999:
1000: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
1001:
1002: * imach.c: Summary: More documentation on projections
1003:
1004: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
1005:
1006: * imach.c: Summary: Some bug with rint
1007:
1008: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
1009:
1010: * imach.c: *** empty log message ***
1011:
1012: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
1013:
1014: * imach.c: Summary: Code into subroutine, cleanings
1015:
1016: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
1017:
1018: * imach.c:
1019: Summary: backprojection and confidence intervals of backprevalence
1020:
1021: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
1022:
1023: * imach.c: Summary: temporary save for backprojection
1024:
1025: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
1026:
1027: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
1028:
1029: * imach.c: Summary: imach 0.99r13 Some bugs fixed
1030:
1031: * imach.c: Summary: Labels in graphs
1032:
1033: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
1034:
1035: * imach.c: Summary: to save
1036:
1037: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
1038:
1039: * imach.c: *** empty log message ***
1040:
1041: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
1042:
1043: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
1044:
1045: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
1046:
1047: * imach.c: Summary: Gnuplot indexations fixed (humm)
1048:
1049: * imach.c:
1050: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
1051:
1052: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
1053:
1054: * imach.c: Summary: Version 0.99r12
1055: Some cleanings, conformed with updated documentation.
1056:
1057: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
1058:
1059: * version.h: *** empty log message ***
1060:
1061: * version.h: Summary:0.99r11
1062:
1063: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
1064:
1065: * imach.c: Summary: Temp
1066:
1067: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
1068:
1069: * imach.c: Summary: Temporary
1070:
1071: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
1072:
1073: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
1074:
1075: * imach.c: Summary: Fixing data parameter line
1076:
1077: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
1078:
1079: * imach.c: Summary: 0.99 in progress
1080:
1081: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
1082:
1083: * imach.c: *** empty log message ***
1084:
1085: * imach.c: Summary: not working
1086:
1087: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
1088:
1089: * imach.c: Summary: continue
1090:
1091: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
1092:
1093: * imach.c: Summary: Starting values from frequencies
1094:
1095: * imach.c: *** empty log message ***
1096:
1097: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
1098:
1099: * imach.c: *** empty log message ***
1100:
1101: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
1102:
1103: * imach.c: Summary: Fixing a lots
1104:
1105: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
1106:
1107: * imach.c: Summary: gnuplot problem in Back projection to fix
1108:
1109: * imach.c: Summary: Better
1110:
1111: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
1112:
1113: * imach.c:
1114: Summary: Improvement in Powell output in order to copy and paste
1115:
1116: * imach.c: Summary: Starting tests of 0.99
1117:
1118: * imach.c: Summary: to valgrind
1119:
1120: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
1121:
1122: * imach.c: *** empty log message ***
1123:
1124: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
1125:
1126: * imach.c: *** empty log message ***
1127:
1128: * imach.c: Summary: not working
1129:
1130: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
1131:
1132: * imach.c: Summary: not working
1133:
1134: * imach.c: Summary: Not working
1135:
1136: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
1137:
1138: * imach.c: Summary: Completing for func too
1139:
1140: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
1141:
1142: * imach.c: Summary: Fixing some arrays, still debugging
1143:
1144: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
1145:
1146: * imach.c:
1147: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
1148:
1149: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
1150:
1151: * imach.c: Summary: temp
1152:
1153: * imach.c: Summary: saving but not running
1154:
1155: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
1156:
1157: * imach.c: Summary: Fixes
1158:
1159: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
1160:
1161: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
1162:
1163: * setup.iss, Makefile, version.h: *** empty log message ***
1164:
1165: * imach.c: Summary: temporary
1166:
1167: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
1168:
1169: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
1170:
1171: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
1172:
1173: * imach.c: Summary: minor bug
1174:
1175: * imach.c: Summary: 0.99r2
1176:
1177: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
1178:
1179: * imach.c: *** empty log message ***
1180:
1181: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
1182:
1183: * imach.c: Summary: 0.99 Back projections
1184:
1185: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
1186:
1187: * imach.c: Summary: Experimental backcast
1188:
1189: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
1190:
1191: * imach.c: Summary: 0.98r4 Warning and status=-2
1192:
1193: Version 0.98r4 is now:
1194: - displaying an error when status is -1, date of interview unknown and date of death known;
1195: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
1196: Older changes concerning s=-2, dating from 2005 have been supersed.
1197:
1198: * Makefile: *** empty log message ***
1199:
1200: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
1201:
1202: * Makefile: *** empty log message ***
1203:
1204: * imach.c: Summary: 0.98r4 working
1205:
1206: * Makefile: Summary: linuxrpm added
1207:
1208: * Makefile: *** empty log message ***
1209:
1210: * imach.c: Summary: temporary not working
1211:
1212: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
1213:
1214: * imach.c: Summary: 0.98r4
1215:
1216: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
1217:
1218: * Makefile: *** empty log message ***
1219:
1220: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
1221:
1222: * Makefile:
1223: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
1224:
1225: * imach.c: Summary: minor typo
1226:
1227: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
1228:
1229: Author: Nicolas Brouard
1230:
1231: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
1232:
1233: * imach.c: Summary: Start working on projected prevalences
1234:
1235: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
1236:
1237: * imach.c: Summary: Adding ftolpl parameter
1238: Author: N Brouard
1239:
1240: We had difficulties to get smoothed confidence intervals. It was due
1241: to the period prevalence which wasn't computed accurately. The inner
1242: parameter ftolpl is now an outer parameter of the .imach parameter
1243: file after estepm. If ftolpl is small 1.e-4 and estepm too,
1244: computation are long.
1245:
1246: * version.h: *** empty log message ***
1247:
1248: * imach.c: Summary: temporary
1249:
1250: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
1251:
1252: * Makefile: *** empty log message ***
1253:
1254: * setup.iss.in: Summary: some new subdirs
1255:
1256: * imach.c: *** empty log message ***
1257:
1258: * setup.iss.in:
1259: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
1260:
1261: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
1262:
1263: * imach.c: *** empty log message ***
1264:
1265: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
1266:
1267: * imach.c:
1268: Summary: 0.98r3 some clarification for graphs on likelihood contributions
1269:
1270: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
1271:
1272: * imach.c: Summary: Some new graphs of contribution to likelihood
1273:
1274: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
1275:
1276: * Makefile:
1277: Summary: Version read from version.h, itself read with cmake
1278:
1279: * imach.c: Summary: looking at better estimation of the hessian
1280:
1281: Also a better criteria for convergence to the period prevalence And
1282: therefore adding the number of years needed to converge. (The
1283: prevalence in any alive state shold sum to one
1284:
1285: * Makefile: *** empty log message ***
1286:
1287: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
1288:
1289: * imach.c:
1290: Summary: Adding some overall graph on contribution to likelihood. Might change
1291:
1292: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
1293:
1294: * Makefile: *** empty log message ***
1295:
1296: * imach.c: Summary: 0.98r0
1297:
1298: - Some new graphs like survival functions
1299: - Some bugs fixed like model=1+age+V2.
1300:
1301: * ChangeLog, Makefile: Summary: 0.98r0
1302:
1303: * CMakeLists.txt: Summary: Some tests for setup.iss
1304:
1305: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
1306:
1307: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
1308:
1309: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
1310:
1311: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
1312:
1313: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
1314:
1315: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
1316:
1317: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
1318:
1319: * imach.c (Module): Merging 1.61 to 1.162
1320:
1321: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
1322:
1323: * prevlim.h (Module):
1324:
1325: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
1326:
1327: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
1328: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
1329:
1330: 2010-04-29 brouard <brouard@ined.fr>
1331:
1332: * imach.c (Module): Checking covariates for more complex models
1333: than V1+V2. A lot of change to be done. Unstable.
1334:
1335: 2010-04-26 brouard <brouard@ined.fr>
1336:
1337: * imach.c (Module): merging some libgsl code. Fixing computation
1338: of likelione (using inter/intrapolation if mle = 0) in order to
1339: get same likelihood as if mle=1.
1340: Some cleaning of code and comments added.
1341:
1342: 2009-10-29 brouard <brouard@ined.fr>
1343:
1344: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
1345:
1346: 2006-06-30 Brouard Nicolas <brouard@localhost>
1347:
1348: * imach.c (Module): Clarifications on computing e.j
1349:
1350: 2006-04-28 Brouard Nicolas <brouard@localhost>
1351:
1352: * imach.c (Module): Yes the sum of survivors was wrong since
1353: imach-114 because nhstepm was no more computed in the age
1354: loop. Now we define nhstepma in the age loop.
1355: (Module): In order to speed up (in case of numerous covariates) we
1356: compute health expectancies (without variances) in a first step
1357: and then all the health expectancies with variances or standard
1358: deviation (needs data from the Hessian matrices) which slows the
1359: computation.
1360: In the future we should be able to stop the program is only health
1361: expectancies and graph are needed without standard deviations.
1362:
1363: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1364:
1365: * imach.iss (Module):
1366:
1367: * imach.c (Module): bugs in evsi + population file added in htm output file
1368:
1369: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1370:
1371: * imach.c (Module):
1372:
1373: 2006-03-20 Brouard Nicolas <brouard@localhost>
1374:
1375: * imach.c (Module): <title> changed, corresponds to .htm file
1376: name. <head> headers where missing.
1377:
1378: * Makefile (Module): 0.98g
1379:
1380: * imach.c (Module): Weights can have a decimal point as for
1381: English (a comma might work with a correct LC_NUMERIC environment,
1382: otherwise the weight is truncated).
1383: Modification of warning when the covariates values are not 0 or
1384: 1.
1385: Version 0.98g
1386:
1387: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1388:
1389: * imach.c (Module): Comments concerning covariates added
1390:
1391: * noreg-setup.iss (Module): Version 0.98f
1392:
1393: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
1394:
1395: * imach.c (Module): refinements in the computation of lli if
1396: status=-2 in order to have more reliable computation if stepm is
1397: not 1 month. Version 0.98f
1398:
1399: 2006-03-15 Brouard Nicolas <brouard@localhost>
1400:
1401: * imach.c (Module): Bug if status = -2, the loglikelihood was
1402: computed as likelihood omitting the logarithm. Version O.98e
1403:
1404: 2006-03-14 Brouard Nicolas <brouard@localhost>
1405:
1406: * imach.c (Module): varevsij Comments added explaining the second
1407: table of variances if popbased=1 .
1408: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
1409: (Module): Function pstamp added
1410: (Module): Version 0.98d
1411:
1412: 2006-03-06 Brouard Nicolas <brouard@localhost>
1413:
1414: * imach.c (Module): Variance-covariance wrong links and
1415: varian-covariance of ej. is needed (Saito).
1416:
1417: 2006-02-27 Brouard Nicolas <brouard@localhost>
1418:
1419: * imach.c (Module): One freematrix added in mlikeli!
1420:
1421: 2006-02-26 Brouard Nicolas <brouard@localhost>
1422:
1423: * imach.c (Module): Some improvements in processing parameter
1424: filename with strsep.
1425:
1426: 2006-02-24 Brouard Nicolas <brouard@localhost>
1427:
1428: * imach.c (Module): Memory leaks checks with valgrind and:
1429: datafile was not closed, some imatrix were not freed and on matrix
1430: allocation too.
1431:
1432: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
1433:
1434: * strsep.c (Module): Inclusion because not in mingw32!!!
1435:
1436: * setup.iss.in (Module): IMACHSETUPVERSION added
1437:
1438: * noreg-setup.iss (Module): added to cvs tree
1439:
1440: * Makefile (Module): IMACHSETUPVERSION added
1441:
1442: 2006-01-30 BROUARD Nicolas <brouard@localhost>
1443:
1444: * Makefile (Module, Module): Latest Makefile
1445:
1446: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
1447:
1448: 2006-01-27 BROUARD Nicolas <brouard@localhost>
1449:
1450: * noreg-setup.iss (Module): ADDED
1451:
1452: 2006-01-24 BROUARD Nicolas <brouard@localhost>
1453:
1454: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
1455:
1456: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
1457:
1458: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
1459:
1460: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
1461:
1462: 2005-09-30 <lievre@PC_00595>
1463:
1464: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
1465: (Module): If the status is missing at the last wave but we know
1466: that the person is alive, then we can code his/her status as -2
1467: (instead of missing=-1 in earlier versions) and his/her
1468: contributions to the likelihood is 1 - Prob of dying from last
1469: health status (= 1-p13= p11+p12 in the easiest case of somebody in
1470: the healthy state at last known wave). Version is 0.98
1471:
1472: 2004-05-20 Brouard Nicolas <brouard@localhost>
1473:
1474: * imach.c (Repository):
1475: Agnes added a direct estimation of mortality (without the need of
1476: computing period prevalence and differential mortality). Thus here
1477: is version 0.97a which has been distributed to some people at
1478: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
1479: mortality using covariates is not done today. Estimating direct
1480: mortality is a very different process because it doesn't need
1481: interpolation because it is easy to get the lx from the force of
1482: the mortality mux in the simplest case as for a Gompertz (log mux
1483: = a + b*x . But we have been able to incorporate the new code
1484: within former imach program (0.96d) without deteriorating too much
1485: the understanding of the program.
1486:
1487: 2003-06-25 <brouard@BROUARD>
1488:
1489: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
1490: exist so I changed back to asctime which exists.
1491: (Module): Version 0.96b
1492:
1493: 2003-06-24 <brouard@BROUARD>
1494:
1495: * imach.c (Module): Some bugs corrected for windows. Also, when
1496: mle=-1 a template is output in file "or"mypar.txt with the design
1497: of the covariance matrix to be input.
1498:
1499: 2003-06-25 Brouard Nicolas <brouard@homebrou>
1500:
1501: * imach.c (Repository): Duplicated warning errors corrected.
1502: (Repository): Elapsed time after each iteration is now output. It
1503: helps to forecast when convergence will be reached. Elapsed time
1504: is stamped in powell. We created a new html file for the graphs
1505: concerning matrix of covariance. It has extension -cov.htm.
1506:
1507: 2003-06-23 Brouard Nicolas <brouard@homebrou>
1508:
1509: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
1510:
1511: 2003-06-18 Brouard Nicolas <brouard@homebrou>
1512:
1513: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
1514:
1515: 2003-06-17 Brouard Nicolas <brouard@homebrou>
1516:
1517:
1518: * imach.c (Repository): Check when date of death was earlier that
1519: current date of interview. It may happen when the death was just
1520: prior to the death. In this case, dh was negative and likelihood
1521: was wrong (infinity). We still send an "Error" but patch by
1522: assuming that the date of death was just one stepm after the
1523: interview.
1524: (Repository): Because some people have very long ID (first column)
1525: we changed int to long in num[] and we added a new lvector for
1526: memory allocation. But we also truncated to 8 characters (left
1527: truncation)
1528:
1529: (Repository): No more line truncation errors.
1530:
1531: 2003-06-14 Brouard Nicolas <brouard@homebrou>
1532:
1533: * imach.c (Repository): Add of a routine likelione (likelihood
1534: only once) which prints on a text file
1535: (ilk) the contributions to the likelihood for each
1536: individual/wave.
1537:
1538: 2003-06-13 Brouard Nicolas <brouard@homebrou>
1539: * imach.c (Repository): Replace "freqsummary" at a correct
1540: place. It differs from routine "prevalence" which may be called
1541: many times. Probs is memory consuming and must be used with
1542: parcimony.
1543:
1544: 2003-06-17 <brouard@BROUARD>
1545:
1546: * timeval.h (Module): Added included file to make use of
1547: gettimeofday working on win32 with cygwin.
1548:
1549: 2003-05-16 Brouard Nicolas <brouard@brouard>
1550: * imach.c (Module): Insert of a warning if the delay between two
1551: waves is negative.
1552:
1553: * imach.c (Module):
1554:
1555: 2003-05-03 <brouard@BROUARD>
1556:
1557: * imach.c: Some cleaning
1558:
1559: 2003-03-28 <brouard@BROUARD>
1560: * imach.c (Module): In version up to 0.92 likelihood was computed
1561: as if date of death was unknown. Death was treated as any other
1562: health state: the date of the interview describes the actual state
1563: and not the date of a change in health state. The former idea was
1564: to consider that at each interview the state was recorded
1565: (healthy, disable or death) and IMaCh was corrected; but when we
1566: introduced the exact date of death then we should have modified
1567: the contribution of an exact death to the likelihood. This new
1568: contribution is smaller and very dependent of the step unit
1569: stepm. It is no more the probability to die between last interview
1570: and month of death but the probability to survive from last
1571: interview up to one month before death multiplied by the
1572: probability to die within a month. Thanks to Chris
1573: Jackson for correcting this bug. Former versions increased
1574: mortality artificially. The bad side is that we add another loop
1575: which slows down the processing. The difference can be up to 10%
1576: lower mortality.
1577:
1578: 2002-05-30 <brouard@BROUARD>
1579: *
1580: * imach.c (Module): Add correlation matrix of one-step
1581: probabilities and covariance matrix
1582:
1583:
1584:
1585:
1586:
FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>
![[BACK]](/icons/small/back.gif){kind=icon}
Return to ChangeLog CVS log ![[TXT]](/icons/small/text.gif){kind=icon}
![[DIR]](/icons/small/dir.gif){kind=icon}
Up to [Local Repository] / imach / src