Annotation of imach/src/ChangeLog, revision 1.57
1.56 brouard 1: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
2:
3: * imach.c (Module): Version 0.99r33 A lot of changes in
4: reassigning covariates: my first idea was that people will always
5: use the first covariate V1 into the model but in fact they are
6: producing data with many covariates and can use an equation model
7: with some of the covariate; it means that in a model V2+V3 instead
8: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
9: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
10: the equation model is restricted to two variables only (V2, V3)
11: and the combination for V2 should be codtabm(k,1) instead of
12: (codtabm(k,2), and the code should be
13: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
14: made. All of these should be simplified once a day like we did in
15: hpxij() for example by using precov[nres] which is computed in
16: decoderesult for each nres of each resultline. Loop should be done
17: on the equation model globally by distinguishing only product with
18: age (which are changing with age) and no more on type of
19: covariates, single dummies, single covariates.
20:
21: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
22:
23: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
24:
25: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
26:
27: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
28:
1.55 brouard 29: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
30:
31: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
32: coredumped, revealed by Feiuno, thank you.
1.57 ! brouard 33:
! 34: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
! 35:
! 36: * r29 W and not sqrt(Wald)
! 37:
! 38: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
! 39:
! 40: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
! 41:
1.55 brouard 42: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
43:
44: * imach.c (Module): Adding the Wald tests from the log to the main
45: htm for better display of the maximum likelihood estimators.
46:
47: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
48:
49: * imach.c: With products of covariates (age or dummies or
50: quantitatives), estimates of parameters were good but when
51: estimating variances the positions of newly created covariates
52: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
53:
54: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
55:
56: * imach.c (Module): Some attempts to find a bug of wrong estimates
57: of confidencce intervals with product in the equation modelC
58:
59: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
60:
61: * imach.c (Module): Some minor improvements
62:
63: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
64:
65: * imach.c (Module): Adding link to text data files
66:
67: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
68:
69: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
70:
71: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
72:
73: * imach.c (Module): Fixed covariates (dummy or quantitative)
74: with missing values have never been allowed but are ERRORS and
75: program quits. Standard deviations of fixed covariates were
76: wrongly computed. Mean and standard deviations of time varying
77: covariates are still not computed.
78:
79: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
80:
81: * 99r25 Improvements in fixing discrepancies between covariates
82: missing in result line but in model.
83:
84: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
85: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
86:
87: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
88:
89: * ./ (Module): Fixed bug on result:
90:
91: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
92:
93: * imach.c (Module): Fix bug on quitting after result lines!
94: (Module): Version 0.99r21
95:
96: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
97:
98: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
99:
100:
101: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
102:
103: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
104:
105: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
106:
107: * (Module): imach.c Update mle=-3 (for computing Life expectancy
108: and life table from the data without any state)
109:
110: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
111:
112: * version.h: Summary: version 0.99.r19
113:
114: * imach.c: Summary: Projection syntax simplified
115: We can now start projections, forward or backward, from the mean date
116: of inteviews up to or down to a number of years of projection:
117: prevforecast=1 yearsfproj=15.3 mobil_average=0
118: or
119: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
120: or
121: prevbackcast=1 yearsbproj=12.3 mobil_average=1
122: or
123: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
124:
125: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
126:
127: * imach.c: Summary: doxygen tex bug
128:
129: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
130:
131: * imach.c: Summary: There was some wrong lines added
132:
133: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
134:
135: * Makefile, imach.c: *** empty log message ***
136:
137: * ChangeLog: Summary: C=
138:
139: * imach.c: Summary: Some updates
140:
141: * imach.c: Summary: Before ncovmax
142:
143: * version.h: *** empty log message ***
144:
145: * imach.c: Summary: 0.99r18 unlimited number of individuals
146: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
147:
148: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
149:
150: * imach.c: Summary: Bug for young ages (<-30) will be in r17
151:
152: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
153:
154: * Makefile: Summary: 0.99r16
155:
156: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
157:
158: * imach.c: Summary: Some bugs fixed
159:
160: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
161:
162: * imach.c: Summary: Bug for young ages (<-30) will be in r17
163:
164: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
165:
166: * imach.c: Summary: Some bugs fixed
167:
168: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
169:
170: * imach.c:
171: Summary: Bug fixed by providing frequencies only for non missing covariates
172:
173: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
174:
175: * imach.c: Summary: some minor bugs
176:
177: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
178:
179: * README.txt: *** empty log message ***
180:
181: * imach.c: Summary: Some bugs fixed, valgrind tested
182:
183: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
184:
185: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
186:
187: * imach.c:
188: Summary: Computing mean and stdeviation of fixed quantitative variables
189:
190: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
191:
192: * imach.c: Summary: Some minor bugs fixed
193:
194: * version.h: *** empty log message ***
195:
196: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
197:
198: * imach.c: *** empty log message ***
199:
200: * imach.c: Summary: Adding second argument for quitting
201:
202: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
203:
204: * Makefile, README.txt, imach.c: Summary: 0.99r15
205: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
206:
207: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
208:
209: * imach.c: Summary: temporary working
210:
211: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
212:
213: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
214:
215: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
216:
217: * imach.c: Summary: BOM files can be read now
218:
219: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
220:
221: * imach.c: Summary: Graphs improvements
222:
223: * imach.c: Summary: Saito's color
224:
225: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
226:
227: * imach.c: Summary: Version 0.99r14
228:
229: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
230:
231: * imach.c: Summary: More documentation on projections
232:
233: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
234:
235: * imach.c: Summary: Some bug with rint
236:
237: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
238:
239: * imach.c: *** empty log message ***
240:
241: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
242:
243: * imach.c: Summary: Code into subroutine, cleanings
244:
245: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
246:
247: * imach.c:
248: Summary: backprojection and confidence intervals of backprevalence
249:
250: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
251:
252: * imach.c: Summary: temporary save for backprojection
253:
254: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
255:
256: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
257:
258: * imach.c: Summary: imach 0.99r13 Some bugs fixed
259:
260: * imach.c: Summary: Labels in graphs
261:
262: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
263:
264: * imach.c: Summary: to save
265:
266: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
267:
268: * imach.c: *** empty log message ***
269:
270: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
271:
272: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
273:
274: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
275:
276: * imach.c: Summary: Gnuplot indexations fixed (humm)
277:
278: * imach.c:
279: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
280:
281: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
282:
283: * imach.c: Summary: Version 0.99r12
284: Some cleanings, conformed with updated documentation.
285:
286: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
287:
288: * version.h: *** empty log message ***
289:
290: * version.h: Summary:0.99r11
291:
292: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
293:
294: * imach.c: Summary: Temp
295:
296: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
297:
298: * imach.c: Summary: Temporary
299:
300: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
301:
302: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
303:
304: * imach.c: Summary: Fixing data parameter line
305:
306: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
307:
308: * imach.c: Summary: 0.99 in progress
309:
310: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
311:
312: * imach.c: *** empty log message ***
313:
314: * imach.c: Summary: not working
315:
316: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
317:
318: * imach.c: Summary: continue
319:
320: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
321:
322: * imach.c: Summary: Starting values from frequencies
323:
324: * imach.c: *** empty log message ***
325:
326: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
327:
328: * imach.c: *** empty log message ***
329:
330: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
331:
332: * imach.c: Summary: Fixing a lots
333:
334: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
335:
336: * imach.c: Summary: gnuplot problem in Back projection to fix
337:
338: * imach.c: Summary: Better
339:
340: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
341:
342: * imach.c:
343: Summary: Improvement in Powell output in order to copy and paste
344:
345: * imach.c: Summary: Starting tests of 0.99
346:
347: * imach.c: Summary: to valgrind
348:
349: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
350:
351: * imach.c: *** empty log message ***
352:
353: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
354:
355: * imach.c: *** empty log message ***
356:
357: * imach.c: Summary: not working
358:
359: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
360:
361: * imach.c: Summary: not working
362:
363: * imach.c: Summary: Not working
364:
365: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
366:
367: * imach.c: Summary: Completing for func too
368:
369: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
370:
371: * imach.c: Summary: Fixing some arrays, still debugging
372:
373: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
374:
375: * imach.c:
376: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
377:
378: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
379:
380: * imach.c: Summary: temp
381:
382: * imach.c: Summary: saving but not running
383:
384: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
385:
386: * imach.c: Summary: Fixes
387:
388: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
389:
390: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
391:
392: * setup.iss, Makefile, version.h: *** empty log message ***
393:
394: * imach.c: Summary: temporary
395:
396: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
397:
398: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
399:
400: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
401:
402: * imach.c: Summary: minor bug
403:
404: * imach.c: Summary: 0.99r2
405:
406: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
407:
408: * imach.c: *** empty log message ***
409:
410: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
411:
412: * imach.c: Summary: 0.99 Back projections
413:
414: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
415:
416: * imach.c: Summary: Experimental backcast
417:
418: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
419:
420: * imach.c: Summary: 0.98r4 Warning and status=-2
421:
422: Version 0.98r4 is now:
423: - displaying an error when status is -1, date of interview unknown and date of death known;
424: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
425: Older changes concerning s=-2, dating from 2005 have been supersed.
426:
427: * Makefile: *** empty log message ***
428:
429: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
430:
431: * Makefile: *** empty log message ***
432:
433: * imach.c: Summary: 0.98r4 working
434:
435: * Makefile: Summary: linuxrpm added
436:
437: * Makefile: *** empty log message ***
438:
439: * imach.c: Summary: temporary not working
440:
441: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
442:
443: * imach.c: Summary: 0.98r4
444:
445: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
446:
447: * Makefile: *** empty log message ***
448:
449: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
450:
451: * Makefile:
452: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
453:
454: * imach.c: Summary: minor typo
455:
456: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
457:
458: Author: Nicolas Brouard
459:
460: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
461:
462: * imach.c: Summary: Start working on projected prevalences
463:
464: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
465:
466: * imach.c: Summary: Adding ftolpl parameter
467: Author: N Brouard
468:
469: We had difficulties to get smoothed confidence intervals. It was due
470: to the period prevalence which wasn't computed accurately. The inner
471: parameter ftolpl is now an outer parameter of the .imach parameter
472: file after estepm. If ftolpl is small 1.e-4 and estepm too,
473: computation are long.
474:
475: * version.h: *** empty log message ***
476:
477: * imach.c: Summary: temporary
478:
479: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
480:
481: * Makefile: *** empty log message ***
482:
483: * setup.iss.in: Summary: some new subdirs
484:
485: * imach.c: *** empty log message ***
486:
487: * setup.iss.in:
488: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
489:
490: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
491:
492: * imach.c: *** empty log message ***
493:
494: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
495:
496: * imach.c:
497: Summary: 0.98r3 some clarification for graphs on likelihood contributions
498:
499: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
500:
501: * imach.c: Summary: Some new graphs of contribution to likelihood
502:
503: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
504:
505: * Makefile:
506: Summary: Version read from version.h, itself read with cmake
507:
508: * imach.c: Summary: looking at better estimation of the hessian
509:
510: Also a better criteria for convergence to the period prevalence And
511: therefore adding the number of years needed to converge. (The
512: prevalence in any alive state shold sum to one
513:
514: * Makefile: *** empty log message ***
515:
516: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
517:
518: * imach.c:
519: Summary: Adding some overall graph on contribution to likelihood. Might change
520:
521: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
522:
523: * Makefile: *** empty log message ***
524:
525: * imach.c: Summary: 0.98r0
526:
527: - Some new graphs like survival functions
528: - Some bugs fixed like model=1+age+V2.
529:
530: * ChangeLog, Makefile: Summary: 0.98r0
531:
532: * CMakeLists.txt: Summary: Some tests for setup.iss
533:
534: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
535:
536: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
537:
538: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
539:
540: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
541:
542: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
543:
544: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
545:
546: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
547:
548: * imach.c (Module): Merging 1.61 to 1.162
549:
550: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
551:
552: * prevlim.h (Module):
553:
554: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
555:
556: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
557: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
558:
559: 2010-04-29 brouard <brouard@ined.fr>
560:
561: * imach.c (Module): Checking covariates for more complex models
562: than V1+V2. A lot of change to be done. Unstable.
563:
564: 2010-04-26 brouard <brouard@ined.fr>
565:
566: * imach.c (Module): merging some libgsl code. Fixing computation
567: of likelione (using inter/intrapolation if mle = 0) in order to
568: get same likelihood as if mle=1.
569: Some cleaning of code and comments added.
570:
571: 2009-10-29 brouard <brouard@ined.fr>
572:
573: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
574:
575: 2006-06-30 Brouard Nicolas <brouard@localhost>
576:
577: * imach.c (Module): Clarifications on computing e.j
578:
579: 2006-04-28 Brouard Nicolas <brouard@localhost>
580:
581: * imach.c (Module): Yes the sum of survivors was wrong since
582: imach-114 because nhstepm was no more computed in the age
583: loop. Now we define nhstepma in the age loop.
584: (Module): In order to speed up (in case of numerous covariates) we
585: compute health expectancies (without variances) in a first step
586: and then all the health expectancies with variances or standard
587: deviation (needs data from the Hessian matrices) which slows the
588: computation.
589: In the future we should be able to stop the program is only health
590: expectancies and graph are needed without standard deviations.
591:
592: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
593:
594: * imach.iss (Module):
595:
596: * imach.c (Module): bugs in evsi + population file added in htm output file
597:
598: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
599:
600: * imach.c (Module):
601:
602: 2006-03-20 Brouard Nicolas <brouard@localhost>
603:
604: * imach.c (Module): <title> changed, corresponds to .htm file
605: name. <head> headers where missing.
606:
607: * Makefile (Module): 0.98g
608:
609: * imach.c (Module): Weights can have a decimal point as for
610: English (a comma might work with a correct LC_NUMERIC environment,
611: otherwise the weight is truncated).
612: Modification of warning when the covariates values are not 0 or
613: 1.
614: Version 0.98g
615:
616: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
617:
618: * imach.c (Module): Comments concerning covariates added
619:
620: * noreg-setup.iss (Module): Version 0.98f
621:
622: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
623:
624: * imach.c (Module): refinements in the computation of lli if
625: status=-2 in order to have more reliable computation if stepm is
626: not 1 month. Version 0.98f
627:
628: 2006-03-15 Brouard Nicolas <brouard@localhost>
629:
630: * imach.c (Module): Bug if status = -2, the loglikelihood was
631: computed as likelihood omitting the logarithm. Version O.98e
632:
633: 2006-03-14 Brouard Nicolas <brouard@localhost>
634:
635: * imach.c (Module): varevsij Comments added explaining the second
636: table of variances if popbased=1 .
637: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
638: (Module): Function pstamp added
639: (Module): Version 0.98d
640:
641: 2006-03-06 Brouard Nicolas <brouard@localhost>
642:
643: * imach.c (Module): Variance-covariance wrong links and
644: varian-covariance of ej. is needed (Saito).
645:
646: 2006-02-27 Brouard Nicolas <brouard@localhost>
647:
648: * imach.c (Module): One freematrix added in mlikeli!
649:
650: 2006-02-26 Brouard Nicolas <brouard@localhost>
651:
652: * imach.c (Module): Some improvements in processing parameter
653: filename with strsep.
654:
655: 2006-02-24 Brouard Nicolas <brouard@localhost>
656:
657: * imach.c (Module): Memory leaks checks with valgrind and:
658: datafile was not closed, some imatrix were not freed and on matrix
659: allocation too.
660:
661: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
662:
663: * strsep.c (Module): Inclusion because not in mingw32!!!
664:
665: * setup.iss.in (Module): IMACHSETUPVERSION added
666:
667: * noreg-setup.iss (Module): added to cvs tree
668:
669: * Makefile (Module): IMACHSETUPVERSION added
670:
671: 2006-01-30 BROUARD Nicolas <brouard@localhost>
672:
673: * Makefile (Module, Module): Latest Makefile
674:
675: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
676:
677: 2006-01-27 BROUARD Nicolas <brouard@localhost>
678:
679: * noreg-setup.iss (Module): ADDED
680:
681: 2006-01-24 BROUARD Nicolas <brouard@localhost>
682:
683: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
684:
685: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
686:
687: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
688:
689: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
690:
691: 2005-09-30 <lievre@PC_00595>
692:
693: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
694: (Module): If the status is missing at the last wave but we know
695: that the person is alive, then we can code his/her status as -2
696: (instead of missing=-1 in earlier versions) and his/her
697: contributions to the likelihood is 1 - Prob of dying from last
698: health status (= 1-p13= p11+p12 in the easiest case of somebody in
699: the healthy state at last known wave). Version is 0.98
700:
701: 2004-05-20 Brouard Nicolas <brouard@localhost>
702:
703: * imach.c (Repository):
704: Agnes added a direct estimation of mortality (without the need of
705: computing period prevalence and differential mortality). Thus here
706: is version 0.97a which has been distributed to some people at
707: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
708: mortality using covariates is not done today. Estimating direct
709: mortality is a very different process because it doesn't need
710: interpolation because it is easy to get the lx from the force of
711: the mortality mux in the simplest case as for a Gompertz (log mux
712: = a + b*x . But we have been able to incorporate the new code
713: within former imach program (0.96d) without deteriorating too much
714: the understanding of the program.
715:
716: 2003-06-25 <brouard@BROUARD>
717:
718: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
719: exist so I changed back to asctime which exists.
720: (Module): Version 0.96b
721:
722: 2003-06-24 <brouard@BROUARD>
723:
724: * imach.c (Module): Some bugs corrected for windows. Also, when
725: mle=-1 a template is output in file "or"mypar.txt with the design
726: of the covariance matrix to be input.
727:
728: 2003-06-25 Brouard Nicolas <brouard@homebrou>
729:
730: * imach.c (Repository): Duplicated warning errors corrected.
731: (Repository): Elapsed time after each iteration is now output. It
732: helps to forecast when convergence will be reached. Elapsed time
733: is stamped in powell. We created a new html file for the graphs
734: concerning matrix of covariance. It has extension -cov.htm.
735:
736: 2003-06-23 Brouard Nicolas <brouard@homebrou>
737:
738: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
739:
740: 2003-06-18 Brouard Nicolas <brouard@homebrou>
741:
742: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
743:
744: 2003-06-17 Brouard Nicolas <brouard@homebrou>
745:
746:
747: * imach.c (Repository): Check when date of death was earlier that
748: current date of interview. It may happen when the death was just
749: prior to the death. In this case, dh was negative and likelihood
750: was wrong (infinity). We still send an "Error" but patch by
751: assuming that the date of death was just one stepm after the
752: interview.
753: (Repository): Because some people have very long ID (first column)
754: we changed int to long in num[] and we added a new lvector for
755: memory allocation. But we also truncated to 8 characters (left
756: truncation)
757:
758: (Repository): No more line truncation errors.
759:
760: 2003-06-14 Brouard Nicolas <brouard@homebrou>
761:
762: * imach.c (Repository): Add of a routine likelione (likelihood
763: only once) which prints on a text file
764: (ilk) the contributions to the likelihood for each
765: individual/wave.
766:
767: 2003-06-13 Brouard Nicolas <brouard@homebrou>
768: * imach.c (Repository): Replace "freqsummary" at a correct
769: place. It differs from routine "prevalence" which may be called
770: many times. Probs is memory consuming and must be used with
771: parcimony.
772:
773: 2003-06-17 <brouard@BROUARD>
774:
775: * timeval.h (Module): Added included file to make use of
776: gettimeofday working on win32 with cygwin.
777:
778: 2003-05-16 Brouard Nicolas <brouard@brouard>
779: * imach.c (Module): Insert of a warning if the delay between two
780: waves is negative.
781:
782: * imach.c (Module):
783:
784: 2003-05-03 <brouard@BROUARD>
785:
786: * imach.c: Some cleaning
787:
788: 2003-03-28 <brouard@BROUARD>
789: * imach.c (Module): In version up to 0.92 likelihood was computed
790: as if date of death was unknown. Death was treated as any other
791: health state: the date of the interview describes the actual state
792: and not the date of a change in health state. The former idea was
793: to consider that at each interview the state was recorded
794: (healthy, disable or death) and IMaCh was corrected; but when we
795: introduced the exact date of death then we should have modified
796: the contribution of an exact death to the likelihood. This new
797: contribution is smaller and very dependent of the step unit
798: stepm. It is no more the probability to die between last interview
799: and month of death but the probability to survive from last
800: interview up to one month before death multiplied by the
801: probability to die within a month. Thanks to Chris
802: Jackson for correcting this bug. Former versions increased
803: mortality artificially. The bad side is that we add another loop
804: which slows down the processing. The difference can be up to 10%
805: lower mortality.
806:
807: 2002-05-30 <brouard@BROUARD>
1.57 ! brouard 808:
1.55 brouard 809: * imach.c (Module): Add correlation matrix of one-step
810: probabilities and covariance matrix
1.54 brouard 811:
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