Annotation of imach/src/ChangeLog, revision 1.58
1.58 ! brouard 1: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
! 4:
1.56 brouard 5: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
6:
7: * imach.c (Module): Version 0.99r33 A lot of changes in
8: reassigning covariates: my first idea was that people will always
9: use the first covariate V1 into the model but in fact they are
10: producing data with many covariates and can use an equation model
11: with some of the covariate; it means that in a model V2+V3 instead
12: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
13: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
14: the equation model is restricted to two variables only (V2, V3)
15: and the combination for V2 should be codtabm(k,1) instead of
16: (codtabm(k,2), and the code should be
17: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
18: made. All of these should be simplified once a day like we did in
19: hpxij() for example by using precov[nres] which is computed in
20: decoderesult for each nres of each resultline. Loop should be done
21: on the equation model globally by distinguishing only product with
22: age (which are changing with age) and no more on type of
23: covariates, single dummies, single covariates.
24:
25: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
26:
27: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
28:
29: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
30:
31: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
32:
1.55 brouard 33: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
34:
35: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
36: coredumped, revealed by Feiuno, thank you.
1.57 brouard 37:
38: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
39:
40: * r29 W and not sqrt(Wald)
41:
42: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
43:
44: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
45:
1.55 brouard 46: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
47:
48: * imach.c (Module): Adding the Wald tests from the log to the main
49: htm for better display of the maximum likelihood estimators.
50:
51: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
52:
53: * imach.c: With products of covariates (age or dummies or
54: quantitatives), estimates of parameters were good but when
55: estimating variances the positions of newly created covariates
56: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
57:
58: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
59:
60: * imach.c (Module): Some attempts to find a bug of wrong estimates
61: of confidencce intervals with product in the equation modelC
62:
63: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
64:
65: * imach.c (Module): Some minor improvements
66:
67: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
68:
69: * imach.c (Module): Adding link to text data files
70:
71: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
72:
73: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
74:
75: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
76:
77: * imach.c (Module): Fixed covariates (dummy or quantitative)
78: with missing values have never been allowed but are ERRORS and
79: program quits. Standard deviations of fixed covariates were
80: wrongly computed. Mean and standard deviations of time varying
81: covariates are still not computed.
82:
83: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
84:
85: * 99r25 Improvements in fixing discrepancies between covariates
86: missing in result line but in model.
87:
88: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
89: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
90:
91: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
92:
93: * ./ (Module): Fixed bug on result:
94:
95: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
96:
97: * imach.c (Module): Fix bug on quitting after result lines!
98: (Module): Version 0.99r21
99:
100: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
101:
102: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
103:
104:
105: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
106:
107: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
108:
109: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
110:
111: * (Module): imach.c Update mle=-3 (for computing Life expectancy
112: and life table from the data without any state)
113:
114: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
115:
116: * version.h: Summary: version 0.99.r19
117:
118: * imach.c: Summary: Projection syntax simplified
119: We can now start projections, forward or backward, from the mean date
120: of inteviews up to or down to a number of years of projection:
121: prevforecast=1 yearsfproj=15.3 mobil_average=0
122: or
123: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
124: or
125: prevbackcast=1 yearsbproj=12.3 mobil_average=1
126: or
127: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
128:
129: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
130:
131: * imach.c: Summary: doxygen tex bug
132:
133: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
134:
135: * imach.c: Summary: There was some wrong lines added
136:
137: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
138:
139: * Makefile, imach.c: *** empty log message ***
140:
141: * ChangeLog: Summary: C=
142:
143: * imach.c: Summary: Some updates
144:
145: * imach.c: Summary: Before ncovmax
146:
147: * version.h: *** empty log message ***
148:
149: * imach.c: Summary: 0.99r18 unlimited number of individuals
150: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
151:
152: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
153:
154: * imach.c: Summary: Bug for young ages (<-30) will be in r17
155:
156: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
157:
158: * Makefile: Summary: 0.99r16
159:
160: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
161:
162: * imach.c: Summary: Some bugs fixed
163:
164: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
165:
166: * imach.c: Summary: Bug for young ages (<-30) will be in r17
167:
168: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
169:
170: * imach.c: Summary: Some bugs fixed
171:
172: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
173:
174: * imach.c:
175: Summary: Bug fixed by providing frequencies only for non missing covariates
176:
177: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
178:
179: * imach.c: Summary: some minor bugs
180:
181: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
182:
183: * README.txt: *** empty log message ***
184:
185: * imach.c: Summary: Some bugs fixed, valgrind tested
186:
187: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
188:
189: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
190:
191: * imach.c:
192: Summary: Computing mean and stdeviation of fixed quantitative variables
193:
194: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
195:
196: * imach.c: Summary: Some minor bugs fixed
197:
198: * version.h: *** empty log message ***
199:
200: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
201:
202: * imach.c: *** empty log message ***
203:
204: * imach.c: Summary: Adding second argument for quitting
205:
206: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
207:
208: * Makefile, README.txt, imach.c: Summary: 0.99r15
209: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
210:
211: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
212:
213: * imach.c: Summary: temporary working
214:
215: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
216:
217: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
218:
219: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
220:
221: * imach.c: Summary: BOM files can be read now
222:
223: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
224:
225: * imach.c: Summary: Graphs improvements
226:
227: * imach.c: Summary: Saito's color
228:
229: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
230:
231: * imach.c: Summary: Version 0.99r14
232:
233: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
234:
235: * imach.c: Summary: More documentation on projections
236:
237: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
238:
239: * imach.c: Summary: Some bug with rint
240:
241: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
242:
243: * imach.c: *** empty log message ***
244:
245: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
246:
247: * imach.c: Summary: Code into subroutine, cleanings
248:
249: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
250:
251: * imach.c:
252: Summary: backprojection and confidence intervals of backprevalence
253:
254: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
255:
256: * imach.c: Summary: temporary save for backprojection
257:
258: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
259:
260: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
261:
262: * imach.c: Summary: imach 0.99r13 Some bugs fixed
263:
264: * imach.c: Summary: Labels in graphs
265:
266: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
267:
268: * imach.c: Summary: to save
269:
270: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
271:
272: * imach.c: *** empty log message ***
273:
274: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
275:
276: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
277:
278: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
279:
280: * imach.c: Summary: Gnuplot indexations fixed (humm)
281:
282: * imach.c:
283: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
284:
285: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
286:
287: * imach.c: Summary: Version 0.99r12
288: Some cleanings, conformed with updated documentation.
289:
290: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
291:
292: * version.h: *** empty log message ***
293:
294: * version.h: Summary:0.99r11
295:
296: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
297:
298: * imach.c: Summary: Temp
299:
300: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
301:
302: * imach.c: Summary: Temporary
303:
304: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
305:
306: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
307:
308: * imach.c: Summary: Fixing data parameter line
309:
310: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
311:
312: * imach.c: Summary: 0.99 in progress
313:
314: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
315:
316: * imach.c: *** empty log message ***
317:
318: * imach.c: Summary: not working
319:
320: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
321:
322: * imach.c: Summary: continue
323:
324: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
325:
326: * imach.c: Summary: Starting values from frequencies
327:
328: * imach.c: *** empty log message ***
329:
330: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
331:
332: * imach.c: *** empty log message ***
333:
334: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
335:
336: * imach.c: Summary: Fixing a lots
337:
338: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
339:
340: * imach.c: Summary: gnuplot problem in Back projection to fix
341:
342: * imach.c: Summary: Better
343:
344: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
345:
346: * imach.c:
347: Summary: Improvement in Powell output in order to copy and paste
348:
349: * imach.c: Summary: Starting tests of 0.99
350:
351: * imach.c: Summary: to valgrind
352:
353: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
354:
355: * imach.c: *** empty log message ***
356:
357: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
358:
359: * imach.c: *** empty log message ***
360:
361: * imach.c: Summary: not working
362:
363: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
364:
365: * imach.c: Summary: not working
366:
367: * imach.c: Summary: Not working
368:
369: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
370:
371: * imach.c: Summary: Completing for func too
372:
373: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
374:
375: * imach.c: Summary: Fixing some arrays, still debugging
376:
377: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
378:
379: * imach.c:
380: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
381:
382: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
383:
384: * imach.c: Summary: temp
385:
386: * imach.c: Summary: saving but not running
387:
388: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
389:
390: * imach.c: Summary: Fixes
391:
392: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
393:
394: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
395:
396: * setup.iss, Makefile, version.h: *** empty log message ***
397:
398: * imach.c: Summary: temporary
399:
400: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
401:
402: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
403:
404: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
405:
406: * imach.c: Summary: minor bug
407:
408: * imach.c: Summary: 0.99r2
409:
410: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
411:
412: * imach.c: *** empty log message ***
413:
414: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
415:
416: * imach.c: Summary: 0.99 Back projections
417:
418: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
419:
420: * imach.c: Summary: Experimental backcast
421:
422: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
423:
424: * imach.c: Summary: 0.98r4 Warning and status=-2
425:
426: Version 0.98r4 is now:
427: - displaying an error when status is -1, date of interview unknown and date of death known;
428: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
429: Older changes concerning s=-2, dating from 2005 have been supersed.
430:
431: * Makefile: *** empty log message ***
432:
433: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
434:
435: * Makefile: *** empty log message ***
436:
437: * imach.c: Summary: 0.98r4 working
438:
439: * Makefile: Summary: linuxrpm added
440:
441: * Makefile: *** empty log message ***
442:
443: * imach.c: Summary: temporary not working
444:
445: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
446:
447: * imach.c: Summary: 0.98r4
448:
449: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
450:
451: * Makefile: *** empty log message ***
452:
453: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
454:
455: * Makefile:
456: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
457:
458: * imach.c: Summary: minor typo
459:
460: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
461:
462: Author: Nicolas Brouard
463:
464: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
465:
466: * imach.c: Summary: Start working on projected prevalences
467:
468: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
469:
470: * imach.c: Summary: Adding ftolpl parameter
471: Author: N Brouard
472:
473: We had difficulties to get smoothed confidence intervals. It was due
474: to the period prevalence which wasn't computed accurately. The inner
475: parameter ftolpl is now an outer parameter of the .imach parameter
476: file after estepm. If ftolpl is small 1.e-4 and estepm too,
477: computation are long.
478:
479: * version.h: *** empty log message ***
480:
481: * imach.c: Summary: temporary
482:
483: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
484:
485: * Makefile: *** empty log message ***
486:
487: * setup.iss.in: Summary: some new subdirs
488:
489: * imach.c: *** empty log message ***
490:
491: * setup.iss.in:
492: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
493:
494: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
495:
496: * imach.c: *** empty log message ***
497:
498: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
499:
500: * imach.c:
501: Summary: 0.98r3 some clarification for graphs on likelihood contributions
502:
503: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
504:
505: * imach.c: Summary: Some new graphs of contribution to likelihood
506:
507: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
508:
509: * Makefile:
510: Summary: Version read from version.h, itself read with cmake
511:
512: * imach.c: Summary: looking at better estimation of the hessian
513:
514: Also a better criteria for convergence to the period prevalence And
515: therefore adding the number of years needed to converge. (The
516: prevalence in any alive state shold sum to one
517:
518: * Makefile: *** empty log message ***
519:
520: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
521:
522: * imach.c:
523: Summary: Adding some overall graph on contribution to likelihood. Might change
524:
525: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
526:
527: * Makefile: *** empty log message ***
528:
529: * imach.c: Summary: 0.98r0
530:
531: - Some new graphs like survival functions
532: - Some bugs fixed like model=1+age+V2.
533:
534: * ChangeLog, Makefile: Summary: 0.98r0
535:
536: * CMakeLists.txt: Summary: Some tests for setup.iss
537:
538: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
539:
540: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
541:
542: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
543:
544: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
545:
546: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
547:
548: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
549:
550: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
551:
552: * imach.c (Module): Merging 1.61 to 1.162
553:
554: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
555:
556: * prevlim.h (Module):
557:
558: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
559:
560: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
561: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
562:
563: 2010-04-29 brouard <brouard@ined.fr>
564:
565: * imach.c (Module): Checking covariates for more complex models
566: than V1+V2. A lot of change to be done. Unstable.
567:
568: 2010-04-26 brouard <brouard@ined.fr>
569:
570: * imach.c (Module): merging some libgsl code. Fixing computation
571: of likelione (using inter/intrapolation if mle = 0) in order to
572: get same likelihood as if mle=1.
573: Some cleaning of code and comments added.
574:
575: 2009-10-29 brouard <brouard@ined.fr>
576:
577: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
578:
579: 2006-06-30 Brouard Nicolas <brouard@localhost>
580:
581: * imach.c (Module): Clarifications on computing e.j
582:
583: 2006-04-28 Brouard Nicolas <brouard@localhost>
584:
585: * imach.c (Module): Yes the sum of survivors was wrong since
586: imach-114 because nhstepm was no more computed in the age
587: loop. Now we define nhstepma in the age loop.
588: (Module): In order to speed up (in case of numerous covariates) we
589: compute health expectancies (without variances) in a first step
590: and then all the health expectancies with variances or standard
591: deviation (needs data from the Hessian matrices) which slows the
592: computation.
593: In the future we should be able to stop the program is only health
594: expectancies and graph are needed without standard deviations.
595:
596: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
597:
598: * imach.iss (Module):
599:
600: * imach.c (Module): bugs in evsi + population file added in htm output file
601:
602: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
603:
604: * imach.c (Module):
605:
606: 2006-03-20 Brouard Nicolas <brouard@localhost>
607:
608: * imach.c (Module): <title> changed, corresponds to .htm file
609: name. <head> headers where missing.
610:
611: * Makefile (Module): 0.98g
612:
613: * imach.c (Module): Weights can have a decimal point as for
614: English (a comma might work with a correct LC_NUMERIC environment,
615: otherwise the weight is truncated).
616: Modification of warning when the covariates values are not 0 or
617: 1.
618: Version 0.98g
619:
620: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
621:
622: * imach.c (Module): Comments concerning covariates added
623:
624: * noreg-setup.iss (Module): Version 0.98f
625:
626: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
627:
628: * imach.c (Module): refinements in the computation of lli if
629: status=-2 in order to have more reliable computation if stepm is
630: not 1 month. Version 0.98f
631:
632: 2006-03-15 Brouard Nicolas <brouard@localhost>
633:
634: * imach.c (Module): Bug if status = -2, the loglikelihood was
635: computed as likelihood omitting the logarithm. Version O.98e
636:
637: 2006-03-14 Brouard Nicolas <brouard@localhost>
638:
639: * imach.c (Module): varevsij Comments added explaining the second
640: table of variances if popbased=1 .
641: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
642: (Module): Function pstamp added
643: (Module): Version 0.98d
644:
645: 2006-03-06 Brouard Nicolas <brouard@localhost>
646:
647: * imach.c (Module): Variance-covariance wrong links and
648: varian-covariance of ej. is needed (Saito).
649:
650: 2006-02-27 Brouard Nicolas <brouard@localhost>
651:
652: * imach.c (Module): One freematrix added in mlikeli!
653:
654: 2006-02-26 Brouard Nicolas <brouard@localhost>
655:
656: * imach.c (Module): Some improvements in processing parameter
657: filename with strsep.
658:
659: 2006-02-24 Brouard Nicolas <brouard@localhost>
660:
661: * imach.c (Module): Memory leaks checks with valgrind and:
662: datafile was not closed, some imatrix were not freed and on matrix
663: allocation too.
664:
665: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
666:
667: * strsep.c (Module): Inclusion because not in mingw32!!!
668:
669: * setup.iss.in (Module): IMACHSETUPVERSION added
670:
671: * noreg-setup.iss (Module): added to cvs tree
672:
673: * Makefile (Module): IMACHSETUPVERSION added
674:
675: 2006-01-30 BROUARD Nicolas <brouard@localhost>
676:
677: * Makefile (Module, Module): Latest Makefile
678:
679: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
680:
681: 2006-01-27 BROUARD Nicolas <brouard@localhost>
682:
683: * noreg-setup.iss (Module): ADDED
684:
685: 2006-01-24 BROUARD Nicolas <brouard@localhost>
686:
687: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
688:
689: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
690:
691: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
692:
693: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
694:
695: 2005-09-30 <lievre@PC_00595>
696:
697: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
698: (Module): If the status is missing at the last wave but we know
699: that the person is alive, then we can code his/her status as -2
700: (instead of missing=-1 in earlier versions) and his/her
701: contributions to the likelihood is 1 - Prob of dying from last
702: health status (= 1-p13= p11+p12 in the easiest case of somebody in
703: the healthy state at last known wave). Version is 0.98
704:
705: 2004-05-20 Brouard Nicolas <brouard@localhost>
706:
707: * imach.c (Repository):
708: Agnes added a direct estimation of mortality (without the need of
709: computing period prevalence and differential mortality). Thus here
710: is version 0.97a which has been distributed to some people at
711: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
712: mortality using covariates is not done today. Estimating direct
713: mortality is a very different process because it doesn't need
714: interpolation because it is easy to get the lx from the force of
715: the mortality mux in the simplest case as for a Gompertz (log mux
716: = a + b*x . But we have been able to incorporate the new code
717: within former imach program (0.96d) without deteriorating too much
718: the understanding of the program.
719:
720: 2003-06-25 <brouard@BROUARD>
721:
722: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
723: exist so I changed back to asctime which exists.
724: (Module): Version 0.96b
725:
726: 2003-06-24 <brouard@BROUARD>
727:
728: * imach.c (Module): Some bugs corrected for windows. Also, when
729: mle=-1 a template is output in file "or"mypar.txt with the design
730: of the covariance matrix to be input.
731:
732: 2003-06-25 Brouard Nicolas <brouard@homebrou>
733:
734: * imach.c (Repository): Duplicated warning errors corrected.
735: (Repository): Elapsed time after each iteration is now output. It
736: helps to forecast when convergence will be reached. Elapsed time
737: is stamped in powell. We created a new html file for the graphs
738: concerning matrix of covariance. It has extension -cov.htm.
739:
740: 2003-06-23 Brouard Nicolas <brouard@homebrou>
741:
742: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
743:
744: 2003-06-18 Brouard Nicolas <brouard@homebrou>
745:
746: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
747:
748: 2003-06-17 Brouard Nicolas <brouard@homebrou>
749:
750:
751: * imach.c (Repository): Check when date of death was earlier that
752: current date of interview. It may happen when the death was just
753: prior to the death. In this case, dh was negative and likelihood
754: was wrong (infinity). We still send an "Error" but patch by
755: assuming that the date of death was just one stepm after the
756: interview.
757: (Repository): Because some people have very long ID (first column)
758: we changed int to long in num[] and we added a new lvector for
759: memory allocation. But we also truncated to 8 characters (left
760: truncation)
761:
762: (Repository): No more line truncation errors.
763:
764: 2003-06-14 Brouard Nicolas <brouard@homebrou>
765:
766: * imach.c (Repository): Add of a routine likelione (likelihood
767: only once) which prints on a text file
768: (ilk) the contributions to the likelihood for each
769: individual/wave.
770:
771: 2003-06-13 Brouard Nicolas <brouard@homebrou>
772: * imach.c (Repository): Replace "freqsummary" at a correct
773: place. It differs from routine "prevalence" which may be called
774: many times. Probs is memory consuming and must be used with
775: parcimony.
776:
777: 2003-06-17 <brouard@BROUARD>
778:
779: * timeval.h (Module): Added included file to make use of
780: gettimeofday working on win32 with cygwin.
781:
782: 2003-05-16 Brouard Nicolas <brouard@brouard>
783: * imach.c (Module): Insert of a warning if the delay between two
784: waves is negative.
785:
786: * imach.c (Module):
787:
788: 2003-05-03 <brouard@BROUARD>
789:
790: * imach.c: Some cleaning
791:
792: 2003-03-28 <brouard@BROUARD>
793: * imach.c (Module): In version up to 0.92 likelihood was computed
794: as if date of death was unknown. Death was treated as any other
795: health state: the date of the interview describes the actual state
796: and not the date of a change in health state. The former idea was
797: to consider that at each interview the state was recorded
798: (healthy, disable or death) and IMaCh was corrected; but when we
799: introduced the exact date of death then we should have modified
800: the contribution of an exact death to the likelihood. This new
801: contribution is smaller and very dependent of the step unit
802: stepm. It is no more the probability to die between last interview
803: and month of death but the probability to survive from last
804: interview up to one month before death multiplied by the
805: probability to die within a month. Thanks to Chris
806: Jackson for correcting this bug. Former versions increased
807: mortality artificially. The bad side is that we add another loop
808: which slows down the processing. The difference can be up to 10%
809: lower mortality.
810:
811: 2002-05-30 <brouard@BROUARD>
1.57 brouard 812:
1.55 brouard 813: * imach.c (Module): Add correlation matrix of one-step
814: probabilities and covariance matrix
1.54 brouard 815:
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