Annotation of imach/src/ChangeLog, revision 1.59
1.59 ! brouard 1: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Now the easy runs i.e. without result or
! 4: model=1+age only did not work. The defautl combination should be 1
! 5: and not 0 because everything hasn't been tranformed yet.
! 6:
! 7: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
! 8:
! 9: * imach.c: Version 0.99r35 because it outputs same results with
! 10: 1+age+V1+V1*age for females and 1+age for females only
! 11: (education=1 noweight)
! 12:
1.58 brouard 13: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
14:
15: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
16:
1.56 brouard 17: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
18:
19: * imach.c (Module): Version 0.99r33 A lot of changes in
20: reassigning covariates: my first idea was that people will always
21: use the first covariate V1 into the model but in fact they are
22: producing data with many covariates and can use an equation model
23: with some of the covariate; it means that in a model V2+V3 instead
24: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
25: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
26: the equation model is restricted to two variables only (V2, V3)
27: and the combination for V2 should be codtabm(k,1) instead of
28: (codtabm(k,2), and the code should be
29: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
30: made. All of these should be simplified once a day like we did in
31: hpxij() for example by using precov[nres] which is computed in
32: decoderesult for each nres of each resultline. Loop should be done
33: on the equation model globally by distinguishing only product with
34: age (which are changing with age) and no more on type of
35: covariates, single dummies, single covariates.
36:
37: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
38:
39: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
40:
41: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
42:
43: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
44:
1.55 brouard 45: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
46:
47: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
48: coredumped, revealed by Feiuno, thank you.
1.57 brouard 49:
50: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
51:
52: * r29 W and not sqrt(Wald)
53:
54: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
55:
56: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
57:
1.55 brouard 58: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
59:
60: * imach.c (Module): Adding the Wald tests from the log to the main
61: htm for better display of the maximum likelihood estimators.
62:
63: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
64:
65: * imach.c: With products of covariates (age or dummies or
66: quantitatives), estimates of parameters were good but when
67: estimating variances the positions of newly created covariates
68: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
69:
70: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
71:
72: * imach.c (Module): Some attempts to find a bug of wrong estimates
73: of confidencce intervals with product in the equation modelC
74:
75: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
76:
77: * imach.c (Module): Some minor improvements
78:
79: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
80:
81: * imach.c (Module): Adding link to text data files
82:
83: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
84:
85: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
86:
87: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
88:
89: * imach.c (Module): Fixed covariates (dummy or quantitative)
90: with missing values have never been allowed but are ERRORS and
91: program quits. Standard deviations of fixed covariates were
92: wrongly computed. Mean and standard deviations of time varying
93: covariates are still not computed.
94:
95: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
96:
97: * 99r25 Improvements in fixing discrepancies between covariates
98: missing in result line but in model.
99:
100: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
101: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
102:
103: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
104:
105: * ./ (Module): Fixed bug on result:
106:
107: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
108:
109: * imach.c (Module): Fix bug on quitting after result lines!
110: (Module): Version 0.99r21
111:
112: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
113:
114: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
115:
116:
117: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
118:
119: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
120:
121: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
122:
123: * (Module): imach.c Update mle=-3 (for computing Life expectancy
124: and life table from the data without any state)
125:
126: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
127:
128: * version.h: Summary: version 0.99.r19
129:
130: * imach.c: Summary: Projection syntax simplified
131: We can now start projections, forward or backward, from the mean date
132: of inteviews up to or down to a number of years of projection:
133: prevforecast=1 yearsfproj=15.3 mobil_average=0
134: or
135: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
136: or
137: prevbackcast=1 yearsbproj=12.3 mobil_average=1
138: or
139: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
140:
141: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
142:
143: * imach.c: Summary: doxygen tex bug
144:
145: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
146:
147: * imach.c: Summary: There was some wrong lines added
148:
149: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
150:
151: * Makefile, imach.c: *** empty log message ***
152:
153: * ChangeLog: Summary: C=
154:
155: * imach.c: Summary: Some updates
156:
157: * imach.c: Summary: Before ncovmax
158:
159: * version.h: *** empty log message ***
160:
161: * imach.c: Summary: 0.99r18 unlimited number of individuals
162: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
163:
164: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
165:
166: * imach.c: Summary: Bug for young ages (<-30) will be in r17
167:
168: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
169:
170: * Makefile: Summary: 0.99r16
171:
172: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
173:
174: * imach.c: Summary: Some bugs fixed
175:
176: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
177:
178: * imach.c: Summary: Bug for young ages (<-30) will be in r17
179:
180: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
181:
182: * imach.c: Summary: Some bugs fixed
183:
184: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
185:
186: * imach.c:
187: Summary: Bug fixed by providing frequencies only for non missing covariates
188:
189: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
190:
191: * imach.c: Summary: some minor bugs
192:
193: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
194:
195: * README.txt: *** empty log message ***
196:
197: * imach.c: Summary: Some bugs fixed, valgrind tested
198:
199: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
200:
201: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
202:
203: * imach.c:
204: Summary: Computing mean and stdeviation of fixed quantitative variables
205:
206: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
207:
208: * imach.c: Summary: Some minor bugs fixed
209:
210: * version.h: *** empty log message ***
211:
212: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
213:
214: * imach.c: *** empty log message ***
215:
216: * imach.c: Summary: Adding second argument for quitting
217:
218: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
219:
220: * Makefile, README.txt, imach.c: Summary: 0.99r15
221: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
222:
223: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
224:
225: * imach.c: Summary: temporary working
226:
227: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
228:
229: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
230:
231: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
232:
233: * imach.c: Summary: BOM files can be read now
234:
235: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
236:
237: * imach.c: Summary: Graphs improvements
238:
239: * imach.c: Summary: Saito's color
240:
241: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
242:
243: * imach.c: Summary: Version 0.99r14
244:
245: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
246:
247: * imach.c: Summary: More documentation on projections
248:
249: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
250:
251: * imach.c: Summary: Some bug with rint
252:
253: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
254:
255: * imach.c: *** empty log message ***
256:
257: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
258:
259: * imach.c: Summary: Code into subroutine, cleanings
260:
261: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
262:
263: * imach.c:
264: Summary: backprojection and confidence intervals of backprevalence
265:
266: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
267:
268: * imach.c: Summary: temporary save for backprojection
269:
270: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
271:
272: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
273:
274: * imach.c: Summary: imach 0.99r13 Some bugs fixed
275:
276: * imach.c: Summary: Labels in graphs
277:
278: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
279:
280: * imach.c: Summary: to save
281:
282: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
283:
284: * imach.c: *** empty log message ***
285:
286: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
287:
288: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
289:
290: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
291:
292: * imach.c: Summary: Gnuplot indexations fixed (humm)
293:
294: * imach.c:
295: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
296:
297: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
298:
299: * imach.c: Summary: Version 0.99r12
300: Some cleanings, conformed with updated documentation.
301:
302: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
303:
304: * version.h: *** empty log message ***
305:
306: * version.h: Summary:0.99r11
307:
308: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
309:
310: * imach.c: Summary: Temp
311:
312: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
313:
314: * imach.c: Summary: Temporary
315:
316: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
317:
318: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
319:
320: * imach.c: Summary: Fixing data parameter line
321:
322: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
323:
324: * imach.c: Summary: 0.99 in progress
325:
326: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
327:
328: * imach.c: *** empty log message ***
329:
330: * imach.c: Summary: not working
331:
332: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
333:
334: * imach.c: Summary: continue
335:
336: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
337:
338: * imach.c: Summary: Starting values from frequencies
339:
340: * imach.c: *** empty log message ***
341:
342: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
343:
344: * imach.c: *** empty log message ***
345:
346: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
347:
348: * imach.c: Summary: Fixing a lots
349:
350: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
351:
352: * imach.c: Summary: gnuplot problem in Back projection to fix
353:
354: * imach.c: Summary: Better
355:
356: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
357:
358: * imach.c:
359: Summary: Improvement in Powell output in order to copy and paste
360:
361: * imach.c: Summary: Starting tests of 0.99
362:
363: * imach.c: Summary: to valgrind
364:
365: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
366:
367: * imach.c: *** empty log message ***
368:
369: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
370:
371: * imach.c: *** empty log message ***
372:
373: * imach.c: Summary: not working
374:
375: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
376:
377: * imach.c: Summary: not working
378:
379: * imach.c: Summary: Not working
380:
381: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
382:
383: * imach.c: Summary: Completing for func too
384:
385: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
386:
387: * imach.c: Summary: Fixing some arrays, still debugging
388:
389: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
390:
391: * imach.c:
392: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
393:
394: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
395:
396: * imach.c: Summary: temp
397:
398: * imach.c: Summary: saving but not running
399:
400: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
401:
402: * imach.c: Summary: Fixes
403:
404: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
405:
406: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
407:
408: * setup.iss, Makefile, version.h: *** empty log message ***
409:
410: * imach.c: Summary: temporary
411:
412: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
413:
414: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
415:
416: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
417:
418: * imach.c: Summary: minor bug
419:
420: * imach.c: Summary: 0.99r2
421:
422: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
423:
424: * imach.c: *** empty log message ***
425:
426: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
427:
428: * imach.c: Summary: 0.99 Back projections
429:
430: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
431:
432: * imach.c: Summary: Experimental backcast
433:
434: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
435:
436: * imach.c: Summary: 0.98r4 Warning and status=-2
437:
438: Version 0.98r4 is now:
439: - displaying an error when status is -1, date of interview unknown and date of death known;
440: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
441: Older changes concerning s=-2, dating from 2005 have been supersed.
442:
443: * Makefile: *** empty log message ***
444:
445: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
446:
447: * Makefile: *** empty log message ***
448:
449: * imach.c: Summary: 0.98r4 working
450:
451: * Makefile: Summary: linuxrpm added
452:
453: * Makefile: *** empty log message ***
454:
455: * imach.c: Summary: temporary not working
456:
457: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
458:
459: * imach.c: Summary: 0.98r4
460:
461: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
462:
463: * Makefile: *** empty log message ***
464:
465: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
466:
467: * Makefile:
468: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
469:
470: * imach.c: Summary: minor typo
471:
472: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
473:
474: Author: Nicolas Brouard
475:
476: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
477:
478: * imach.c: Summary: Start working on projected prevalences
479:
480: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
481:
482: * imach.c: Summary: Adding ftolpl parameter
483: Author: N Brouard
484:
485: We had difficulties to get smoothed confidence intervals. It was due
486: to the period prevalence which wasn't computed accurately. The inner
487: parameter ftolpl is now an outer parameter of the .imach parameter
488: file after estepm. If ftolpl is small 1.e-4 and estepm too,
489: computation are long.
490:
491: * version.h: *** empty log message ***
492:
493: * imach.c: Summary: temporary
494:
495: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
496:
497: * Makefile: *** empty log message ***
498:
499: * setup.iss.in: Summary: some new subdirs
500:
501: * imach.c: *** empty log message ***
502:
503: * setup.iss.in:
504: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
505:
506: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
507:
508: * imach.c: *** empty log message ***
509:
510: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
511:
512: * imach.c:
513: Summary: 0.98r3 some clarification for graphs on likelihood contributions
514:
515: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
516:
517: * imach.c: Summary: Some new graphs of contribution to likelihood
518:
519: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
520:
521: * Makefile:
522: Summary: Version read from version.h, itself read with cmake
523:
524: * imach.c: Summary: looking at better estimation of the hessian
525:
526: Also a better criteria for convergence to the period prevalence And
527: therefore adding the number of years needed to converge. (The
528: prevalence in any alive state shold sum to one
529:
530: * Makefile: *** empty log message ***
531:
532: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
533:
534: * imach.c:
535: Summary: Adding some overall graph on contribution to likelihood. Might change
536:
537: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
538:
539: * Makefile: *** empty log message ***
540:
541: * imach.c: Summary: 0.98r0
542:
543: - Some new graphs like survival functions
544: - Some bugs fixed like model=1+age+V2.
545:
546: * ChangeLog, Makefile: Summary: 0.98r0
547:
548: * CMakeLists.txt: Summary: Some tests for setup.iss
549:
550: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
551:
552: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
553:
554: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
555:
556: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
557:
558: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
559:
560: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
561:
562: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
563:
564: * imach.c (Module): Merging 1.61 to 1.162
565:
566: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
567:
568: * prevlim.h (Module):
569:
570: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
571:
572: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
573: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
574:
575: 2010-04-29 brouard <brouard@ined.fr>
576:
577: * imach.c (Module): Checking covariates for more complex models
578: than V1+V2. A lot of change to be done. Unstable.
579:
580: 2010-04-26 brouard <brouard@ined.fr>
581:
582: * imach.c (Module): merging some libgsl code. Fixing computation
583: of likelione (using inter/intrapolation if mle = 0) in order to
584: get same likelihood as if mle=1.
585: Some cleaning of code and comments added.
586:
587: 2009-10-29 brouard <brouard@ined.fr>
588:
589: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
590:
591: 2006-06-30 Brouard Nicolas <brouard@localhost>
592:
593: * imach.c (Module): Clarifications on computing e.j
594:
595: 2006-04-28 Brouard Nicolas <brouard@localhost>
596:
597: * imach.c (Module): Yes the sum of survivors was wrong since
598: imach-114 because nhstepm was no more computed in the age
599: loop. Now we define nhstepma in the age loop.
600: (Module): In order to speed up (in case of numerous covariates) we
601: compute health expectancies (without variances) in a first step
602: and then all the health expectancies with variances or standard
603: deviation (needs data from the Hessian matrices) which slows the
604: computation.
605: In the future we should be able to stop the program is only health
606: expectancies and graph are needed without standard deviations.
607:
608: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
609:
610: * imach.iss (Module):
611:
612: * imach.c (Module): bugs in evsi + population file added in htm output file
613:
614: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
615:
616: * imach.c (Module):
617:
618: 2006-03-20 Brouard Nicolas <brouard@localhost>
619:
620: * imach.c (Module): <title> changed, corresponds to .htm file
621: name. <head> headers where missing.
622:
623: * Makefile (Module): 0.98g
624:
625: * imach.c (Module): Weights can have a decimal point as for
626: English (a comma might work with a correct LC_NUMERIC environment,
627: otherwise the weight is truncated).
628: Modification of warning when the covariates values are not 0 or
629: 1.
630: Version 0.98g
631:
632: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
633:
634: * imach.c (Module): Comments concerning covariates added
635:
636: * noreg-setup.iss (Module): Version 0.98f
637:
638: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
639:
640: * imach.c (Module): refinements in the computation of lli if
641: status=-2 in order to have more reliable computation if stepm is
642: not 1 month. Version 0.98f
643:
644: 2006-03-15 Brouard Nicolas <brouard@localhost>
645:
646: * imach.c (Module): Bug if status = -2, the loglikelihood was
647: computed as likelihood omitting the logarithm. Version O.98e
648:
649: 2006-03-14 Brouard Nicolas <brouard@localhost>
650:
651: * imach.c (Module): varevsij Comments added explaining the second
652: table of variances if popbased=1 .
653: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
654: (Module): Function pstamp added
655: (Module): Version 0.98d
656:
657: 2006-03-06 Brouard Nicolas <brouard@localhost>
658:
659: * imach.c (Module): Variance-covariance wrong links and
660: varian-covariance of ej. is needed (Saito).
661:
662: 2006-02-27 Brouard Nicolas <brouard@localhost>
663:
664: * imach.c (Module): One freematrix added in mlikeli!
665:
666: 2006-02-26 Brouard Nicolas <brouard@localhost>
667:
668: * imach.c (Module): Some improvements in processing parameter
669: filename with strsep.
670:
671: 2006-02-24 Brouard Nicolas <brouard@localhost>
672:
673: * imach.c (Module): Memory leaks checks with valgrind and:
674: datafile was not closed, some imatrix were not freed and on matrix
675: allocation too.
676:
677: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
678:
679: * strsep.c (Module): Inclusion because not in mingw32!!!
680:
681: * setup.iss.in (Module): IMACHSETUPVERSION added
682:
683: * noreg-setup.iss (Module): added to cvs tree
684:
685: * Makefile (Module): IMACHSETUPVERSION added
686:
687: 2006-01-30 BROUARD Nicolas <brouard@localhost>
688:
689: * Makefile (Module, Module): Latest Makefile
690:
691: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
692:
693: 2006-01-27 BROUARD Nicolas <brouard@localhost>
694:
695: * noreg-setup.iss (Module): ADDED
696:
697: 2006-01-24 BROUARD Nicolas <brouard@localhost>
698:
699: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
700:
701: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
702:
703: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
704:
705: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
706:
707: 2005-09-30 <lievre@PC_00595>
708:
709: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
710: (Module): If the status is missing at the last wave but we know
711: that the person is alive, then we can code his/her status as -2
712: (instead of missing=-1 in earlier versions) and his/her
713: contributions to the likelihood is 1 - Prob of dying from last
714: health status (= 1-p13= p11+p12 in the easiest case of somebody in
715: the healthy state at last known wave). Version is 0.98
716:
717: 2004-05-20 Brouard Nicolas <brouard@localhost>
718:
719: * imach.c (Repository):
720: Agnes added a direct estimation of mortality (without the need of
721: computing period prevalence and differential mortality). Thus here
722: is version 0.97a which has been distributed to some people at
723: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
724: mortality using covariates is not done today. Estimating direct
725: mortality is a very different process because it doesn't need
726: interpolation because it is easy to get the lx from the force of
727: the mortality mux in the simplest case as for a Gompertz (log mux
728: = a + b*x . But we have been able to incorporate the new code
729: within former imach program (0.96d) without deteriorating too much
730: the understanding of the program.
731:
732: 2003-06-25 <brouard@BROUARD>
733:
734: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
735: exist so I changed back to asctime which exists.
736: (Module): Version 0.96b
737:
738: 2003-06-24 <brouard@BROUARD>
739:
740: * imach.c (Module): Some bugs corrected for windows. Also, when
741: mle=-1 a template is output in file "or"mypar.txt with the design
742: of the covariance matrix to be input.
743:
744: 2003-06-25 Brouard Nicolas <brouard@homebrou>
745:
746: * imach.c (Repository): Duplicated warning errors corrected.
747: (Repository): Elapsed time after each iteration is now output. It
748: helps to forecast when convergence will be reached. Elapsed time
749: is stamped in powell. We created a new html file for the graphs
750: concerning matrix of covariance. It has extension -cov.htm.
751:
752: 2003-06-23 Brouard Nicolas <brouard@homebrou>
753:
754: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
755:
756: 2003-06-18 Brouard Nicolas <brouard@homebrou>
757:
758: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
759:
760: 2003-06-17 Brouard Nicolas <brouard@homebrou>
761:
762:
763: * imach.c (Repository): Check when date of death was earlier that
764: current date of interview. It may happen when the death was just
765: prior to the death. In this case, dh was negative and likelihood
766: was wrong (infinity). We still send an "Error" but patch by
767: assuming that the date of death was just one stepm after the
768: interview.
769: (Repository): Because some people have very long ID (first column)
770: we changed int to long in num[] and we added a new lvector for
771: memory allocation. But we also truncated to 8 characters (left
772: truncation)
773:
774: (Repository): No more line truncation errors.
775:
776: 2003-06-14 Brouard Nicolas <brouard@homebrou>
777:
778: * imach.c (Repository): Add of a routine likelione (likelihood
779: only once) which prints on a text file
780: (ilk) the contributions to the likelihood for each
781: individual/wave.
782:
783: 2003-06-13 Brouard Nicolas <brouard@homebrou>
784: * imach.c (Repository): Replace "freqsummary" at a correct
785: place. It differs from routine "prevalence" which may be called
786: many times. Probs is memory consuming and must be used with
787: parcimony.
788:
789: 2003-06-17 <brouard@BROUARD>
790:
791: * timeval.h (Module): Added included file to make use of
792: gettimeofday working on win32 with cygwin.
793:
794: 2003-05-16 Brouard Nicolas <brouard@brouard>
795: * imach.c (Module): Insert of a warning if the delay between two
796: waves is negative.
797:
798: * imach.c (Module):
799:
800: 2003-05-03 <brouard@BROUARD>
801:
802: * imach.c: Some cleaning
803:
804: 2003-03-28 <brouard@BROUARD>
805: * imach.c (Module): In version up to 0.92 likelihood was computed
806: as if date of death was unknown. Death was treated as any other
807: health state: the date of the interview describes the actual state
808: and not the date of a change in health state. The former idea was
809: to consider that at each interview the state was recorded
810: (healthy, disable or death) and IMaCh was corrected; but when we
811: introduced the exact date of death then we should have modified
812: the contribution of an exact death to the likelihood. This new
813: contribution is smaller and very dependent of the step unit
814: stepm. It is no more the probability to die between last interview
815: and month of death but the probability to survive from last
816: interview up to one month before death multiplied by the
817: probability to die within a month. Thanks to Chris
818: Jackson for correcting this bug. Former versions increased
819: mortality artificially. The bad side is that we add another loop
820: which slows down the processing. The difference can be up to 10%
821: lower mortality.
822:
823: 2002-05-30 <brouard@BROUARD>
1.57 brouard 824:
1.55 brouard 825: * imach.c (Module): Add correlation matrix of one-step
826: probabilities and covariance matrix
1.54 brouard 827:
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