Annotation of imach/src/ChangeLog, revision 1.60
1.60 ! brouard 1: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Adding timevarying products of any kinds,
! 4: should work before shifting cotvar from ncovcol+nqv columns in
! 5: order to have a correspondance between the column of cotvar and
! 6: the id of column.
! 7:
! 8: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
! 9:
! 10: * imach.c (Module): Many improvements for fixing products of fixed
! 11: timevarying as well as fixed * fixed, and test with quantitative
! 12: covariate.
! 13:
1.59 brouard 14: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
15:
16: * imach.c (Module): Now the easy runs i.e. without result or
17: model=1+age only did not work. The defautl combination should be 1
18: and not 0 because everything hasn't been tranformed yet.
19:
20: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
21:
22: * imach.c: Version 0.99r35 because it outputs same results with
23: 1+age+V1+V1*age for females and 1+age for females only
24: (education=1 noweight)
25:
1.58 brouard 26: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
27:
28: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
29:
1.56 brouard 30: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
31:
32: * imach.c (Module): Version 0.99r33 A lot of changes in
33: reassigning covariates: my first idea was that people will always
34: use the first covariate V1 into the model but in fact they are
35: producing data with many covariates and can use an equation model
36: with some of the covariate; it means that in a model V2+V3 instead
37: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
38: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
39: the equation model is restricted to two variables only (V2, V3)
40: and the combination for V2 should be codtabm(k,1) instead of
41: (codtabm(k,2), and the code should be
42: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
43: made. All of these should be simplified once a day like we did in
44: hpxij() for example by using precov[nres] which is computed in
45: decoderesult for each nres of each resultline. Loop should be done
46: on the equation model globally by distinguishing only product with
47: age (which are changing with age) and no more on type of
48: covariates, single dummies, single covariates.
49:
50: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
51:
52: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
53:
54: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
55:
56: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
57:
1.55 brouard 58: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
59:
60: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
61: coredumped, revealed by Feiuno, thank you.
1.57 brouard 62:
63: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
64:
65: * r29 W and not sqrt(Wald)
66:
67: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
68:
69: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
70:
1.55 brouard 71: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
72:
73: * imach.c (Module): Adding the Wald tests from the log to the main
74: htm for better display of the maximum likelihood estimators.
75:
76: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
77:
78: * imach.c: With products of covariates (age or dummies or
79: quantitatives), estimates of parameters were good but when
80: estimating variances the positions of newly created covariates
81: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
82:
83: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
84:
85: * imach.c (Module): Some attempts to find a bug of wrong estimates
86: of confidencce intervals with product in the equation modelC
87:
88: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
89:
90: * imach.c (Module): Some minor improvements
91:
92: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
93:
94: * imach.c (Module): Adding link to text data files
95:
96: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
97:
98: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
99:
100: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
101:
102: * imach.c (Module): Fixed covariates (dummy or quantitative)
103: with missing values have never been allowed but are ERRORS and
104: program quits. Standard deviations of fixed covariates were
105: wrongly computed. Mean and standard deviations of time varying
106: covariates are still not computed.
107:
108: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
109:
110: * 99r25 Improvements in fixing discrepancies between covariates
111: missing in result line but in model.
112:
113: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
114: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
115:
116: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
117:
118: * ./ (Module): Fixed bug on result:
119:
120: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
121:
122: * imach.c (Module): Fix bug on quitting after result lines!
123: (Module): Version 0.99r21
124:
125: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
126:
127: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
128:
129:
130: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
131:
132: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
133:
134: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
135:
136: * (Module): imach.c Update mle=-3 (for computing Life expectancy
137: and life table from the data without any state)
138:
139: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
140:
141: * version.h: Summary: version 0.99.r19
142:
143: * imach.c: Summary: Projection syntax simplified
144: We can now start projections, forward or backward, from the mean date
145: of inteviews up to or down to a number of years of projection:
146: prevforecast=1 yearsfproj=15.3 mobil_average=0
147: or
148: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
149: or
150: prevbackcast=1 yearsbproj=12.3 mobil_average=1
151: or
152: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
153:
154: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
155:
156: * imach.c: Summary: doxygen tex bug
157:
158: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
159:
160: * imach.c: Summary: There was some wrong lines added
161:
162: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
163:
164: * Makefile, imach.c: *** empty log message ***
165:
166: * ChangeLog: Summary: C=
167:
168: * imach.c: Summary: Some updates
169:
170: * imach.c: Summary: Before ncovmax
171:
172: * version.h: *** empty log message ***
173:
174: * imach.c: Summary: 0.99r18 unlimited number of individuals
175: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
176:
177: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
178:
179: * imach.c: Summary: Bug for young ages (<-30) will be in r17
180:
181: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
182:
183: * Makefile: Summary: 0.99r16
184:
185: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
186:
187: * imach.c: Summary: Some bugs fixed
188:
189: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
190:
191: * imach.c: Summary: Bug for young ages (<-30) will be in r17
192:
193: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
194:
195: * imach.c: Summary: Some bugs fixed
196:
197: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
198:
199: * imach.c:
200: Summary: Bug fixed by providing frequencies only for non missing covariates
201:
202: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
203:
204: * imach.c: Summary: some minor bugs
205:
206: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
207:
208: * README.txt: *** empty log message ***
209:
210: * imach.c: Summary: Some bugs fixed, valgrind tested
211:
212: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
213:
214: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
215:
216: * imach.c:
217: Summary: Computing mean and stdeviation of fixed quantitative variables
218:
219: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
220:
221: * imach.c: Summary: Some minor bugs fixed
222:
223: * version.h: *** empty log message ***
224:
225: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
226:
227: * imach.c: *** empty log message ***
228:
229: * imach.c: Summary: Adding second argument for quitting
230:
231: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
232:
233: * Makefile, README.txt, imach.c: Summary: 0.99r15
234: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
235:
236: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
237:
238: * imach.c: Summary: temporary working
239:
240: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
241:
242: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
243:
244: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
245:
246: * imach.c: Summary: BOM files can be read now
247:
248: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
249:
250: * imach.c: Summary: Graphs improvements
251:
252: * imach.c: Summary: Saito's color
253:
254: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
255:
256: * imach.c: Summary: Version 0.99r14
257:
258: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
259:
260: * imach.c: Summary: More documentation on projections
261:
262: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
263:
264: * imach.c: Summary: Some bug with rint
265:
266: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
267:
268: * imach.c: *** empty log message ***
269:
270: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
271:
272: * imach.c: Summary: Code into subroutine, cleanings
273:
274: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
275:
276: * imach.c:
277: Summary: backprojection and confidence intervals of backprevalence
278:
279: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
280:
281: * imach.c: Summary: temporary save for backprojection
282:
283: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
284:
285: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
286:
287: * imach.c: Summary: imach 0.99r13 Some bugs fixed
288:
289: * imach.c: Summary: Labels in graphs
290:
291: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
292:
293: * imach.c: Summary: to save
294:
295: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
296:
297: * imach.c: *** empty log message ***
298:
299: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
300:
301: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
302:
303: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
304:
305: * imach.c: Summary: Gnuplot indexations fixed (humm)
306:
307: * imach.c:
308: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
309:
310: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
311:
312: * imach.c: Summary: Version 0.99r12
313: Some cleanings, conformed with updated documentation.
314:
315: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
316:
317: * version.h: *** empty log message ***
318:
319: * version.h: Summary:0.99r11
320:
321: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
322:
323: * imach.c: Summary: Temp
324:
325: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
326:
327: * imach.c: Summary: Temporary
328:
329: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
330:
331: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
332:
333: * imach.c: Summary: Fixing data parameter line
334:
335: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
336:
337: * imach.c: Summary: 0.99 in progress
338:
339: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
340:
341: * imach.c: *** empty log message ***
342:
343: * imach.c: Summary: not working
344:
345: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
346:
347: * imach.c: Summary: continue
348:
349: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
350:
351: * imach.c: Summary: Starting values from frequencies
352:
353: * imach.c: *** empty log message ***
354:
355: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
356:
357: * imach.c: *** empty log message ***
358:
359: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
360:
361: * imach.c: Summary: Fixing a lots
362:
363: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
364:
365: * imach.c: Summary: gnuplot problem in Back projection to fix
366:
367: * imach.c: Summary: Better
368:
369: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
370:
371: * imach.c:
372: Summary: Improvement in Powell output in order to copy and paste
373:
374: * imach.c: Summary: Starting tests of 0.99
375:
376: * imach.c: Summary: to valgrind
377:
378: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
379:
380: * imach.c: *** empty log message ***
381:
382: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
383:
384: * imach.c: *** empty log message ***
385:
386: * imach.c: Summary: not working
387:
388: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
389:
390: * imach.c: Summary: not working
391:
392: * imach.c: Summary: Not working
393:
394: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
395:
396: * imach.c: Summary: Completing for func too
397:
398: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
399:
400: * imach.c: Summary: Fixing some arrays, still debugging
401:
402: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
403:
404: * imach.c:
405: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
406:
407: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
408:
409: * imach.c: Summary: temp
410:
411: * imach.c: Summary: saving but not running
412:
413: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
414:
415: * imach.c: Summary: Fixes
416:
417: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
418:
419: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
420:
421: * setup.iss, Makefile, version.h: *** empty log message ***
422:
423: * imach.c: Summary: temporary
424:
425: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
426:
427: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
428:
429: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
430:
431: * imach.c: Summary: minor bug
432:
433: * imach.c: Summary: 0.99r2
434:
435: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
436:
437: * imach.c: *** empty log message ***
438:
439: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
440:
441: * imach.c: Summary: 0.99 Back projections
442:
443: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
444:
445: * imach.c: Summary: Experimental backcast
446:
447: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
448:
449: * imach.c: Summary: 0.98r4 Warning and status=-2
450:
451: Version 0.98r4 is now:
452: - displaying an error when status is -1, date of interview unknown and date of death known;
453: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
454: Older changes concerning s=-2, dating from 2005 have been supersed.
455:
456: * Makefile: *** empty log message ***
457:
458: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
459:
460: * Makefile: *** empty log message ***
461:
462: * imach.c: Summary: 0.98r4 working
463:
464: * Makefile: Summary: linuxrpm added
465:
466: * Makefile: *** empty log message ***
467:
468: * imach.c: Summary: temporary not working
469:
470: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
471:
472: * imach.c: Summary: 0.98r4
473:
474: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
475:
476: * Makefile: *** empty log message ***
477:
478: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
479:
480: * Makefile:
481: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
482:
483: * imach.c: Summary: minor typo
484:
485: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
486:
487: Author: Nicolas Brouard
488:
489: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
490:
491: * imach.c: Summary: Start working on projected prevalences
492:
493: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
494:
495: * imach.c: Summary: Adding ftolpl parameter
496: Author: N Brouard
497:
498: We had difficulties to get smoothed confidence intervals. It was due
499: to the period prevalence which wasn't computed accurately. The inner
500: parameter ftolpl is now an outer parameter of the .imach parameter
501: file after estepm. If ftolpl is small 1.e-4 and estepm too,
502: computation are long.
503:
504: * version.h: *** empty log message ***
505:
506: * imach.c: Summary: temporary
507:
508: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
509:
510: * Makefile: *** empty log message ***
511:
512: * setup.iss.in: Summary: some new subdirs
513:
514: * imach.c: *** empty log message ***
515:
516: * setup.iss.in:
517: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
518:
519: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
520:
521: * imach.c: *** empty log message ***
522:
523: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
524:
525: * imach.c:
526: Summary: 0.98r3 some clarification for graphs on likelihood contributions
527:
528: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
529:
530: * imach.c: Summary: Some new graphs of contribution to likelihood
531:
532: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
533:
534: * Makefile:
535: Summary: Version read from version.h, itself read with cmake
536:
537: * imach.c: Summary: looking at better estimation of the hessian
538:
539: Also a better criteria for convergence to the period prevalence And
540: therefore adding the number of years needed to converge. (The
541: prevalence in any alive state shold sum to one
542:
543: * Makefile: *** empty log message ***
544:
545: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
546:
547: * imach.c:
548: Summary: Adding some overall graph on contribution to likelihood. Might change
549:
550: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
551:
552: * Makefile: *** empty log message ***
553:
554: * imach.c: Summary: 0.98r0
555:
556: - Some new graphs like survival functions
557: - Some bugs fixed like model=1+age+V2.
558:
559: * ChangeLog, Makefile: Summary: 0.98r0
560:
561: * CMakeLists.txt: Summary: Some tests for setup.iss
562:
563: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
564:
565: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
566:
567: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
568:
569: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
570:
571: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
572:
573: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
574:
575: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
576:
577: * imach.c (Module): Merging 1.61 to 1.162
578:
579: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
580:
581: * prevlim.h (Module):
582:
583: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
584:
585: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
586: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
587:
588: 2010-04-29 brouard <brouard@ined.fr>
589:
590: * imach.c (Module): Checking covariates for more complex models
591: than V1+V2. A lot of change to be done. Unstable.
592:
593: 2010-04-26 brouard <brouard@ined.fr>
594:
595: * imach.c (Module): merging some libgsl code. Fixing computation
596: of likelione (using inter/intrapolation if mle = 0) in order to
597: get same likelihood as if mle=1.
598: Some cleaning of code and comments added.
599:
600: 2009-10-29 brouard <brouard@ined.fr>
601:
602: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
603:
604: 2006-06-30 Brouard Nicolas <brouard@localhost>
605:
606: * imach.c (Module): Clarifications on computing e.j
607:
608: 2006-04-28 Brouard Nicolas <brouard@localhost>
609:
610: * imach.c (Module): Yes the sum of survivors was wrong since
611: imach-114 because nhstepm was no more computed in the age
612: loop. Now we define nhstepma in the age loop.
613: (Module): In order to speed up (in case of numerous covariates) we
614: compute health expectancies (without variances) in a first step
615: and then all the health expectancies with variances or standard
616: deviation (needs data from the Hessian matrices) which slows the
617: computation.
618: In the future we should be able to stop the program is only health
619: expectancies and graph are needed without standard deviations.
620:
621: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
622:
623: * imach.iss (Module):
624:
625: * imach.c (Module): bugs in evsi + population file added in htm output file
626:
627: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
628:
629: * imach.c (Module):
630:
631: 2006-03-20 Brouard Nicolas <brouard@localhost>
632:
633: * imach.c (Module): <title> changed, corresponds to .htm file
634: name. <head> headers where missing.
635:
636: * Makefile (Module): 0.98g
637:
638: * imach.c (Module): Weights can have a decimal point as for
639: English (a comma might work with a correct LC_NUMERIC environment,
640: otherwise the weight is truncated).
641: Modification of warning when the covariates values are not 0 or
642: 1.
643: Version 0.98g
644:
645: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
646:
647: * imach.c (Module): Comments concerning covariates added
648:
649: * noreg-setup.iss (Module): Version 0.98f
650:
651: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
652:
653: * imach.c (Module): refinements in the computation of lli if
654: status=-2 in order to have more reliable computation if stepm is
655: not 1 month. Version 0.98f
656:
657: 2006-03-15 Brouard Nicolas <brouard@localhost>
658:
659: * imach.c (Module): Bug if status = -2, the loglikelihood was
660: computed as likelihood omitting the logarithm. Version O.98e
661:
662: 2006-03-14 Brouard Nicolas <brouard@localhost>
663:
664: * imach.c (Module): varevsij Comments added explaining the second
665: table of variances if popbased=1 .
666: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
667: (Module): Function pstamp added
668: (Module): Version 0.98d
669:
670: 2006-03-06 Brouard Nicolas <brouard@localhost>
671:
672: * imach.c (Module): Variance-covariance wrong links and
673: varian-covariance of ej. is needed (Saito).
674:
675: 2006-02-27 Brouard Nicolas <brouard@localhost>
676:
677: * imach.c (Module): One freematrix added in mlikeli!
678:
679: 2006-02-26 Brouard Nicolas <brouard@localhost>
680:
681: * imach.c (Module): Some improvements in processing parameter
682: filename with strsep.
683:
684: 2006-02-24 Brouard Nicolas <brouard@localhost>
685:
686: * imach.c (Module): Memory leaks checks with valgrind and:
687: datafile was not closed, some imatrix were not freed and on matrix
688: allocation too.
689:
690: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
691:
692: * strsep.c (Module): Inclusion because not in mingw32!!!
693:
694: * setup.iss.in (Module): IMACHSETUPVERSION added
695:
696: * noreg-setup.iss (Module): added to cvs tree
697:
698: * Makefile (Module): IMACHSETUPVERSION added
699:
700: 2006-01-30 BROUARD Nicolas <brouard@localhost>
701:
702: * Makefile (Module, Module): Latest Makefile
703:
704: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
705:
706: 2006-01-27 BROUARD Nicolas <brouard@localhost>
707:
708: * noreg-setup.iss (Module): ADDED
709:
710: 2006-01-24 BROUARD Nicolas <brouard@localhost>
711:
712: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
713:
714: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
715:
716: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
717:
718: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
719:
720: 2005-09-30 <lievre@PC_00595>
721:
722: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
723: (Module): If the status is missing at the last wave but we know
724: that the person is alive, then we can code his/her status as -2
725: (instead of missing=-1 in earlier versions) and his/her
726: contributions to the likelihood is 1 - Prob of dying from last
727: health status (= 1-p13= p11+p12 in the easiest case of somebody in
728: the healthy state at last known wave). Version is 0.98
729:
730: 2004-05-20 Brouard Nicolas <brouard@localhost>
731:
732: * imach.c (Repository):
733: Agnes added a direct estimation of mortality (without the need of
734: computing period prevalence and differential mortality). Thus here
735: is version 0.97a which has been distributed to some people at
736: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
737: mortality using covariates is not done today. Estimating direct
738: mortality is a very different process because it doesn't need
739: interpolation because it is easy to get the lx from the force of
740: the mortality mux in the simplest case as for a Gompertz (log mux
741: = a + b*x . But we have been able to incorporate the new code
742: within former imach program (0.96d) without deteriorating too much
743: the understanding of the program.
744:
745: 2003-06-25 <brouard@BROUARD>
746:
747: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
748: exist so I changed back to asctime which exists.
749: (Module): Version 0.96b
750:
751: 2003-06-24 <brouard@BROUARD>
752:
753: * imach.c (Module): Some bugs corrected for windows. Also, when
754: mle=-1 a template is output in file "or"mypar.txt with the design
755: of the covariance matrix to be input.
756:
757: 2003-06-25 Brouard Nicolas <brouard@homebrou>
758:
759: * imach.c (Repository): Duplicated warning errors corrected.
760: (Repository): Elapsed time after each iteration is now output. It
761: helps to forecast when convergence will be reached. Elapsed time
762: is stamped in powell. We created a new html file for the graphs
763: concerning matrix of covariance. It has extension -cov.htm.
764:
765: 2003-06-23 Brouard Nicolas <brouard@homebrou>
766:
767: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
768:
769: 2003-06-18 Brouard Nicolas <brouard@homebrou>
770:
771: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
772:
773: 2003-06-17 Brouard Nicolas <brouard@homebrou>
774:
775:
776: * imach.c (Repository): Check when date of death was earlier that
777: current date of interview. It may happen when the death was just
778: prior to the death. In this case, dh was negative and likelihood
779: was wrong (infinity). We still send an "Error" but patch by
780: assuming that the date of death was just one stepm after the
781: interview.
782: (Repository): Because some people have very long ID (first column)
783: we changed int to long in num[] and we added a new lvector for
784: memory allocation. But we also truncated to 8 characters (left
785: truncation)
786:
787: (Repository): No more line truncation errors.
788:
789: 2003-06-14 Brouard Nicolas <brouard@homebrou>
790:
791: * imach.c (Repository): Add of a routine likelione (likelihood
792: only once) which prints on a text file
793: (ilk) the contributions to the likelihood for each
794: individual/wave.
795:
796: 2003-06-13 Brouard Nicolas <brouard@homebrou>
797: * imach.c (Repository): Replace "freqsummary" at a correct
798: place. It differs from routine "prevalence" which may be called
799: many times. Probs is memory consuming and must be used with
800: parcimony.
801:
802: 2003-06-17 <brouard@BROUARD>
803:
804: * timeval.h (Module): Added included file to make use of
805: gettimeofday working on win32 with cygwin.
806:
807: 2003-05-16 Brouard Nicolas <brouard@brouard>
808: * imach.c (Module): Insert of a warning if the delay between two
809: waves is negative.
810:
811: * imach.c (Module):
812:
813: 2003-05-03 <brouard@BROUARD>
814:
815: * imach.c: Some cleaning
816:
817: 2003-03-28 <brouard@BROUARD>
818: * imach.c (Module): In version up to 0.92 likelihood was computed
819: as if date of death was unknown. Death was treated as any other
820: health state: the date of the interview describes the actual state
821: and not the date of a change in health state. The former idea was
822: to consider that at each interview the state was recorded
823: (healthy, disable or death) and IMaCh was corrected; but when we
824: introduced the exact date of death then we should have modified
825: the contribution of an exact death to the likelihood. This new
826: contribution is smaller and very dependent of the step unit
827: stepm. It is no more the probability to die between last interview
828: and month of death but the probability to survive from last
829: interview up to one month before death multiplied by the
830: probability to die within a month. Thanks to Chris
831: Jackson for correcting this bug. Former versions increased
832: mortality artificially. The bad side is that we add another loop
833: which slows down the processing. The difference can be up to 10%
834: lower mortality.
835:
836: 2002-05-30 <brouard@BROUARD>
1.57 brouard 837:
1.55 brouard 838: * imach.c (Module): Add correlation matrix of one-step
839: probabilities and covariance matrix
1.54 brouard 840:
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