Annotation of imach/src/ChangeLog, revision 1.62
1.62 ! brouard 1: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Version 0.99r42 needed a newer version of
! 4: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
! 5: version 5.0 or 5.1 distributed with IMaCh.
! 6:
1.61 brouard 7: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
8:
9: * imach.c (Module): Fixing when a state in the data is 0 or higher
10: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
11:
12: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
13:
14: * imach.c (Module): Version 0.99r39 with colored dummy covariates
15: (fixed or time varying), using new last columns of
16: ILK_parameter.txt file.
17:
1.60 brouard 18: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
19:
20: * imach.c (Module): Adding timevarying products of any kinds,
21: should work before shifting cotvar from ncovcol+nqv columns in
22: order to have a correspondance between the column of cotvar and
23: the id of column.
1.61 brouard 24: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 25:
26: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
27:
28: * imach.c (Module): Many improvements for fixing products of fixed
29: timevarying as well as fixed * fixed, and test with quantitative
30: covariate.
31:
1.59 brouard 32: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
33:
34: * imach.c (Module): Now the easy runs i.e. without result or
35: model=1+age only did not work. The defautl combination should be 1
36: and not 0 because everything hasn't been tranformed yet.
37:
38: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
39:
40: * imach.c: Version 0.99r35 because it outputs same results with
41: 1+age+V1+V1*age for females and 1+age for females only
42: (education=1 noweight)
43:
1.58 brouard 44: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
45:
46: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
47:
1.56 brouard 48: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
49:
50: * imach.c (Module): Version 0.99r33 A lot of changes in
51: reassigning covariates: my first idea was that people will always
52: use the first covariate V1 into the model but in fact they are
53: producing data with many covariates and can use an equation model
54: with some of the covariate; it means that in a model V2+V3 instead
55: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
56: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
57: the equation model is restricted to two variables only (V2, V3)
58: and the combination for V2 should be codtabm(k,1) instead of
59: (codtabm(k,2), and the code should be
60: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
61: made. All of these should be simplified once a day like we did in
62: hpxij() for example by using precov[nres] which is computed in
63: decoderesult for each nres of each resultline. Loop should be done
64: on the equation model globally by distinguishing only product with
65: age (which are changing with age) and no more on type of
66: covariates, single dummies, single covariates.
67:
68: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
69:
70: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
71:
72: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
73:
74: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
75:
1.55 brouard 76: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
77:
78: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
79: coredumped, revealed by Feiuno, thank you.
1.57 brouard 80:
81: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
82:
83: * r29 W and not sqrt(Wald)
84:
85: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
86:
87: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
88:
1.55 brouard 89: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
90:
91: * imach.c (Module): Adding the Wald tests from the log to the main
92: htm for better display of the maximum likelihood estimators.
93:
94: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
95:
96: * imach.c: With products of covariates (age or dummies or
97: quantitatives), estimates of parameters were good but when
98: estimating variances the positions of newly created covariates
99: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
100:
101: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
102:
103: * imach.c (Module): Some attempts to find a bug of wrong estimates
104: of confidencce intervals with product in the equation modelC
105:
106: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
107:
108: * imach.c (Module): Some minor improvements
109:
110: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
111:
112: * imach.c (Module): Adding link to text data files
113:
114: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
115:
116: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
117:
118: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
119:
120: * imach.c (Module): Fixed covariates (dummy or quantitative)
121: with missing values have never been allowed but are ERRORS and
122: program quits. Standard deviations of fixed covariates were
123: wrongly computed. Mean and standard deviations of time varying
124: covariates are still not computed.
125:
126: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
127:
128: * 99r25 Improvements in fixing discrepancies between covariates
129: missing in result line but in model.
130:
131: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
132: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
133:
134: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
135:
136: * ./ (Module): Fixed bug on result:
137:
138: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
139:
140: * imach.c (Module): Fix bug on quitting after result lines!
141: (Module): Version 0.99r21
142:
143: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
144:
145: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
146:
147:
148: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
149:
150: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
151:
152: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
153:
154: * (Module): imach.c Update mle=-3 (for computing Life expectancy
155: and life table from the data without any state)
156:
157: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
158:
159: * version.h: Summary: version 0.99.r19
160:
161: * imach.c: Summary: Projection syntax simplified
162: We can now start projections, forward or backward, from the mean date
163: of inteviews up to or down to a number of years of projection:
164: prevforecast=1 yearsfproj=15.3 mobil_average=0
165: or
166: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
167: or
168: prevbackcast=1 yearsbproj=12.3 mobil_average=1
169: or
170: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
171:
172: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
173:
174: * imach.c: Summary: doxygen tex bug
175:
176: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
177:
178: * imach.c: Summary: There was some wrong lines added
179:
180: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
181:
182: * Makefile, imach.c: *** empty log message ***
183:
184: * ChangeLog: Summary: C=
185:
186: * imach.c: Summary: Some updates
187:
188: * imach.c: Summary: Before ncovmax
189:
190: * version.h: *** empty log message ***
191:
192: * imach.c: Summary: 0.99r18 unlimited number of individuals
193: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
194:
195: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
196:
197: * imach.c: Summary: Bug for young ages (<-30) will be in r17
198:
199: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
200:
201: * Makefile: Summary: 0.99r16
202:
203: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
204:
205: * imach.c: Summary: Some bugs fixed
206:
207: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
208:
209: * imach.c: Summary: Bug for young ages (<-30) will be in r17
210:
211: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
212:
213: * imach.c: Summary: Some bugs fixed
214:
215: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
216:
217: * imach.c:
218: Summary: Bug fixed by providing frequencies only for non missing covariates
219:
220: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
221:
222: * imach.c: Summary: some minor bugs
223:
224: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
225:
226: * README.txt: *** empty log message ***
227:
228: * imach.c: Summary: Some bugs fixed, valgrind tested
229:
230: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
231:
232: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
233:
234: * imach.c:
235: Summary: Computing mean and stdeviation of fixed quantitative variables
236:
237: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
238:
239: * imach.c: Summary: Some minor bugs fixed
240:
241: * version.h: *** empty log message ***
242:
243: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
244:
245: * imach.c: *** empty log message ***
246:
247: * imach.c: Summary: Adding second argument for quitting
248:
249: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
250:
251: * Makefile, README.txt, imach.c: Summary: 0.99r15
252: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
253:
254: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
255:
256: * imach.c: Summary: temporary working
257:
258: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
259:
260: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
261:
262: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
263:
264: * imach.c: Summary: BOM files can be read now
265:
266: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
267:
268: * imach.c: Summary: Graphs improvements
269:
270: * imach.c: Summary: Saito's color
271:
272: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
273:
274: * imach.c: Summary: Version 0.99r14
275:
276: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
277:
278: * imach.c: Summary: More documentation on projections
279:
280: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
281:
282: * imach.c: Summary: Some bug with rint
283:
284: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
285:
286: * imach.c: *** empty log message ***
287:
288: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
289:
290: * imach.c: Summary: Code into subroutine, cleanings
291:
292: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
293:
294: * imach.c:
295: Summary: backprojection and confidence intervals of backprevalence
296:
297: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
298:
299: * imach.c: Summary: temporary save for backprojection
300:
301: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
302:
303: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
304:
305: * imach.c: Summary: imach 0.99r13 Some bugs fixed
306:
307: * imach.c: Summary: Labels in graphs
308:
309: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
310:
311: * imach.c: Summary: to save
312:
313: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
314:
315: * imach.c: *** empty log message ***
316:
317: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
318:
319: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
320:
321: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
322:
323: * imach.c: Summary: Gnuplot indexations fixed (humm)
324:
325: * imach.c:
326: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
327:
328: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
329:
330: * imach.c: Summary: Version 0.99r12
331: Some cleanings, conformed with updated documentation.
332:
333: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
334:
335: * version.h: *** empty log message ***
336:
337: * version.h: Summary:0.99r11
338:
339: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
340:
341: * imach.c: Summary: Temp
342:
343: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
344:
345: * imach.c: Summary: Temporary
346:
347: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
348:
349: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
350:
351: * imach.c: Summary: Fixing data parameter line
352:
353: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
354:
355: * imach.c: Summary: 0.99 in progress
356:
357: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
358:
359: * imach.c: *** empty log message ***
360:
361: * imach.c: Summary: not working
362:
363: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
364:
365: * imach.c: Summary: continue
366:
367: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
368:
369: * imach.c: Summary: Starting values from frequencies
370:
371: * imach.c: *** empty log message ***
372:
373: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
374:
375: * imach.c: *** empty log message ***
376:
377: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
378:
379: * imach.c: Summary: Fixing a lots
380:
381: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
382:
383: * imach.c: Summary: gnuplot problem in Back projection to fix
384:
385: * imach.c: Summary: Better
386:
387: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
388:
389: * imach.c:
390: Summary: Improvement in Powell output in order to copy and paste
391:
392: * imach.c: Summary: Starting tests of 0.99
393:
394: * imach.c: Summary: to valgrind
395:
396: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
397:
398: * imach.c: *** empty log message ***
399:
400: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
401:
402: * imach.c: *** empty log message ***
403:
404: * imach.c: Summary: not working
405:
406: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
407:
408: * imach.c: Summary: not working
409:
410: * imach.c: Summary: Not working
411:
412: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
413:
414: * imach.c: Summary: Completing for func too
415:
416: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
417:
418: * imach.c: Summary: Fixing some arrays, still debugging
419:
420: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
421:
422: * imach.c:
423: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
424:
425: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
426:
427: * imach.c: Summary: temp
428:
429: * imach.c: Summary: saving but not running
430:
431: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
432:
433: * imach.c: Summary: Fixes
434:
435: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
436:
437: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
438:
439: * setup.iss, Makefile, version.h: *** empty log message ***
440:
441: * imach.c: Summary: temporary
442:
443: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
444:
445: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
446:
447: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
448:
449: * imach.c: Summary: minor bug
450:
451: * imach.c: Summary: 0.99r2
452:
453: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
454:
455: * imach.c: *** empty log message ***
456:
457: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
458:
459: * imach.c: Summary: 0.99 Back projections
460:
461: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
462:
463: * imach.c: Summary: Experimental backcast
464:
465: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
466:
467: * imach.c: Summary: 0.98r4 Warning and status=-2
468:
469: Version 0.98r4 is now:
470: - displaying an error when status is -1, date of interview unknown and date of death known;
471: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
472: Older changes concerning s=-2, dating from 2005 have been supersed.
473:
474: * Makefile: *** empty log message ***
475:
476: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
477:
478: * Makefile: *** empty log message ***
479:
480: * imach.c: Summary: 0.98r4 working
481:
482: * Makefile: Summary: linuxrpm added
483:
484: * Makefile: *** empty log message ***
485:
486: * imach.c: Summary: temporary not working
487:
488: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
489:
490: * imach.c: Summary: 0.98r4
491:
492: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
493:
494: * Makefile: *** empty log message ***
495:
496: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
497:
498: * Makefile:
499: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
500:
501: * imach.c: Summary: minor typo
502:
503: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
504:
505: Author: Nicolas Brouard
506:
507: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
508:
509: * imach.c: Summary: Start working on projected prevalences
510:
511: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
512:
513: * imach.c: Summary: Adding ftolpl parameter
514: Author: N Brouard
515:
516: We had difficulties to get smoothed confidence intervals. It was due
517: to the period prevalence which wasn't computed accurately. The inner
518: parameter ftolpl is now an outer parameter of the .imach parameter
519: file after estepm. If ftolpl is small 1.e-4 and estepm too,
520: computation are long.
521:
522: * version.h: *** empty log message ***
523:
524: * imach.c: Summary: temporary
525:
526: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
527:
528: * Makefile: *** empty log message ***
529:
530: * setup.iss.in: Summary: some new subdirs
531:
532: * imach.c: *** empty log message ***
533:
534: * setup.iss.in:
535: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
536:
537: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
538:
539: * imach.c: *** empty log message ***
540:
541: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
542:
543: * imach.c:
544: Summary: 0.98r3 some clarification for graphs on likelihood contributions
545:
546: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
547:
548: * imach.c: Summary: Some new graphs of contribution to likelihood
549:
550: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
551:
552: * Makefile:
553: Summary: Version read from version.h, itself read with cmake
554:
555: * imach.c: Summary: looking at better estimation of the hessian
556:
557: Also a better criteria for convergence to the period prevalence And
558: therefore adding the number of years needed to converge. (The
559: prevalence in any alive state shold sum to one
560:
561: * Makefile: *** empty log message ***
562:
563: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
564:
565: * imach.c:
566: Summary: Adding some overall graph on contribution to likelihood. Might change
567:
568: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
569:
570: * Makefile: *** empty log message ***
571:
572: * imach.c: Summary: 0.98r0
573:
574: - Some new graphs like survival functions
575: - Some bugs fixed like model=1+age+V2.
576:
577: * ChangeLog, Makefile: Summary: 0.98r0
578:
579: * CMakeLists.txt: Summary: Some tests for setup.iss
580:
581: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
582:
583: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
584:
585: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
586:
587: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
588:
589: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
590:
591: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
592:
593: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
594:
595: * imach.c (Module): Merging 1.61 to 1.162
596:
597: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
598:
599: * prevlim.h (Module):
600:
601: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
602:
603: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
604: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
605:
606: 2010-04-29 brouard <brouard@ined.fr>
607:
608: * imach.c (Module): Checking covariates for more complex models
609: than V1+V2. A lot of change to be done. Unstable.
610:
611: 2010-04-26 brouard <brouard@ined.fr>
612:
613: * imach.c (Module): merging some libgsl code. Fixing computation
614: of likelione (using inter/intrapolation if mle = 0) in order to
615: get same likelihood as if mle=1.
616: Some cleaning of code and comments added.
617:
618: 2009-10-29 brouard <brouard@ined.fr>
619:
620: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
621:
622: 2006-06-30 Brouard Nicolas <brouard@localhost>
623:
624: * imach.c (Module): Clarifications on computing e.j
625:
626: 2006-04-28 Brouard Nicolas <brouard@localhost>
627:
628: * imach.c (Module): Yes the sum of survivors was wrong since
629: imach-114 because nhstepm was no more computed in the age
630: loop. Now we define nhstepma in the age loop.
631: (Module): In order to speed up (in case of numerous covariates) we
632: compute health expectancies (without variances) in a first step
633: and then all the health expectancies with variances or standard
634: deviation (needs data from the Hessian matrices) which slows the
635: computation.
636: In the future we should be able to stop the program is only health
637: expectancies and graph are needed without standard deviations.
638:
639: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
640:
641: * imach.iss (Module):
642:
643: * imach.c (Module): bugs in evsi + population file added in htm output file
644:
645: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
646:
647: * imach.c (Module):
648:
649: 2006-03-20 Brouard Nicolas <brouard@localhost>
650:
651: * imach.c (Module): <title> changed, corresponds to .htm file
652: name. <head> headers where missing.
653:
654: * Makefile (Module): 0.98g
655:
656: * imach.c (Module): Weights can have a decimal point as for
657: English (a comma might work with a correct LC_NUMERIC environment,
658: otherwise the weight is truncated).
659: Modification of warning when the covariates values are not 0 or
660: 1.
661: Version 0.98g
662:
663: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
664:
665: * imach.c (Module): Comments concerning covariates added
666:
667: * noreg-setup.iss (Module): Version 0.98f
668:
669: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
670:
671: * imach.c (Module): refinements in the computation of lli if
672: status=-2 in order to have more reliable computation if stepm is
673: not 1 month. Version 0.98f
674:
675: 2006-03-15 Brouard Nicolas <brouard@localhost>
676:
677: * imach.c (Module): Bug if status = -2, the loglikelihood was
678: computed as likelihood omitting the logarithm. Version O.98e
679:
680: 2006-03-14 Brouard Nicolas <brouard@localhost>
681:
682: * imach.c (Module): varevsij Comments added explaining the second
683: table of variances if popbased=1 .
684: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
685: (Module): Function pstamp added
686: (Module): Version 0.98d
687:
688: 2006-03-06 Brouard Nicolas <brouard@localhost>
689:
690: * imach.c (Module): Variance-covariance wrong links and
691: varian-covariance of ej. is needed (Saito).
692:
693: 2006-02-27 Brouard Nicolas <brouard@localhost>
694:
695: * imach.c (Module): One freematrix added in mlikeli!
696:
697: 2006-02-26 Brouard Nicolas <brouard@localhost>
698:
699: * imach.c (Module): Some improvements in processing parameter
700: filename with strsep.
701:
702: 2006-02-24 Brouard Nicolas <brouard@localhost>
703:
704: * imach.c (Module): Memory leaks checks with valgrind and:
705: datafile was not closed, some imatrix were not freed and on matrix
706: allocation too.
707:
708: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
709:
710: * strsep.c (Module): Inclusion because not in mingw32!!!
711:
712: * setup.iss.in (Module): IMACHSETUPVERSION added
713:
714: * noreg-setup.iss (Module): added to cvs tree
715:
716: * Makefile (Module): IMACHSETUPVERSION added
717:
718: 2006-01-30 BROUARD Nicolas <brouard@localhost>
719:
720: * Makefile (Module, Module): Latest Makefile
721:
722: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
723:
724: 2006-01-27 BROUARD Nicolas <brouard@localhost>
725:
726: * noreg-setup.iss (Module): ADDED
727:
728: 2006-01-24 BROUARD Nicolas <brouard@localhost>
729:
730: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
731:
732: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
733:
734: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
735:
736: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
737:
738: 2005-09-30 <lievre@PC_00595>
739:
740: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
741: (Module): If the status is missing at the last wave but we know
742: that the person is alive, then we can code his/her status as -2
743: (instead of missing=-1 in earlier versions) and his/her
744: contributions to the likelihood is 1 - Prob of dying from last
745: health status (= 1-p13= p11+p12 in the easiest case of somebody in
746: the healthy state at last known wave). Version is 0.98
747:
748: 2004-05-20 Brouard Nicolas <brouard@localhost>
749:
750: * imach.c (Repository):
751: Agnes added a direct estimation of mortality (without the need of
752: computing period prevalence and differential mortality). Thus here
753: is version 0.97a which has been distributed to some people at
754: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
755: mortality using covariates is not done today. Estimating direct
756: mortality is a very different process because it doesn't need
757: interpolation because it is easy to get the lx from the force of
758: the mortality mux in the simplest case as for a Gompertz (log mux
759: = a + b*x . But we have been able to incorporate the new code
760: within former imach program (0.96d) without deteriorating too much
761: the understanding of the program.
762:
763: 2003-06-25 <brouard@BROUARD>
764:
765: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
766: exist so I changed back to asctime which exists.
767: (Module): Version 0.96b
768:
769: 2003-06-24 <brouard@BROUARD>
770:
771: * imach.c (Module): Some bugs corrected for windows. Also, when
772: mle=-1 a template is output in file "or"mypar.txt with the design
773: of the covariance matrix to be input.
774:
775: 2003-06-25 Brouard Nicolas <brouard@homebrou>
776:
777: * imach.c (Repository): Duplicated warning errors corrected.
778: (Repository): Elapsed time after each iteration is now output. It
779: helps to forecast when convergence will be reached. Elapsed time
780: is stamped in powell. We created a new html file for the graphs
781: concerning matrix of covariance. It has extension -cov.htm.
782:
783: 2003-06-23 Brouard Nicolas <brouard@homebrou>
784:
785: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
786:
787: 2003-06-18 Brouard Nicolas <brouard@homebrou>
788:
789: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
790:
791: 2003-06-17 Brouard Nicolas <brouard@homebrou>
792:
793:
794: * imach.c (Repository): Check when date of death was earlier that
795: current date of interview. It may happen when the death was just
796: prior to the death. In this case, dh was negative and likelihood
797: was wrong (infinity). We still send an "Error" but patch by
798: assuming that the date of death was just one stepm after the
799: interview.
800: (Repository): Because some people have very long ID (first column)
801: we changed int to long in num[] and we added a new lvector for
802: memory allocation. But we also truncated to 8 characters (left
803: truncation)
804:
805: (Repository): No more line truncation errors.
806:
807: 2003-06-14 Brouard Nicolas <brouard@homebrou>
808:
809: * imach.c (Repository): Add of a routine likelione (likelihood
810: only once) which prints on a text file
811: (ilk) the contributions to the likelihood for each
812: individual/wave.
813:
814: 2003-06-13 Brouard Nicolas <brouard@homebrou>
815: * imach.c (Repository): Replace "freqsummary" at a correct
816: place. It differs from routine "prevalence" which may be called
817: many times. Probs is memory consuming and must be used with
818: parcimony.
819:
820: 2003-06-17 <brouard@BROUARD>
821:
822: * timeval.h (Module): Added included file to make use of
823: gettimeofday working on win32 with cygwin.
824:
825: 2003-05-16 Brouard Nicolas <brouard@brouard>
826: * imach.c (Module): Insert of a warning if the delay between two
827: waves is negative.
828:
829: * imach.c (Module):
830:
831: 2003-05-03 <brouard@BROUARD>
832:
833: * imach.c: Some cleaning
834:
835: 2003-03-28 <brouard@BROUARD>
836: * imach.c (Module): In version up to 0.92 likelihood was computed
837: as if date of death was unknown. Death was treated as any other
838: health state: the date of the interview describes the actual state
839: and not the date of a change in health state. The former idea was
840: to consider that at each interview the state was recorded
841: (healthy, disable or death) and IMaCh was corrected; but when we
842: introduced the exact date of death then we should have modified
843: the contribution of an exact death to the likelihood. This new
844: contribution is smaller and very dependent of the step unit
845: stepm. It is no more the probability to die between last interview
846: and month of death but the probability to survive from last
847: interview up to one month before death multiplied by the
848: probability to die within a month. Thanks to Chris
849: Jackson for correcting this bug. Former versions increased
850: mortality artificially. The bad side is that we add another loop
851: which slows down the processing. The difference can be up to 10%
852: lower mortality.
853:
854: 2002-05-30 <brouard@BROUARD>
1.57 brouard 855:
1.55 brouard 856: * imach.c (Module): Add correlation matrix of one-step
857: probabilities and covariance matrix
1.54 brouard 858:
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