Annotation of imach/src/ChangeLog, revision 1.63
1.63 ! brouard 1: <<<<<<< ChangeLog
! 2: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
! 3:
! 4: * imach.c (Module): Inverting the model equation and fixingg bugs
! 5: in the drawings
! 6: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
! 7:
! 8: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
! 9:
! 10: * imach.c (Module): some bugs in printinggnuplot
! 11:
1.62 brouard 12: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
13:
14: * imach.c (Module): Version 0.99r42 needed a newer version of
15: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
16: version 5.0 or 5.1 distributed with IMaCh.
17:
1.61 brouard 18: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
19:
20: * imach.c (Module): Fixing when a state in the data is 0 or higher
21: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
22:
1.63 ! brouard 23: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
! 24:
! 25: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
! 26:
! 27: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
! 28:
! 29: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
! 30:
1.61 brouard 31: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
32:
33: * imach.c (Module): Version 0.99r39 with colored dummy covariates
34: (fixed or time varying), using new last columns of
35: ILK_parameter.txt file.
36:
1.60 brouard 37: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
38:
39: * imach.c (Module): Adding timevarying products of any kinds,
40: should work before shifting cotvar from ncovcol+nqv columns in
41: order to have a correspondance between the column of cotvar and
42: the id of column.
1.61 brouard 43: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 44:
45: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
46:
47: * imach.c (Module): Many improvements for fixing products of fixed
48: timevarying as well as fixed * fixed, and test with quantitative
49: covariate.
50:
1.59 brouard 51: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
52:
53: * imach.c (Module): Now the easy runs i.e. without result or
54: model=1+age only did not work. The defautl combination should be 1
55: and not 0 because everything hasn't been tranformed yet.
56:
57: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
58:
59: * imach.c: Version 0.99r35 because it outputs same results with
60: 1+age+V1+V1*age for females and 1+age for females only
61: (education=1 noweight)
62:
1.58 brouard 63: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
64:
65: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
66:
1.56 brouard 67: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
68:
69: * imach.c (Module): Version 0.99r33 A lot of changes in
70: reassigning covariates: my first idea was that people will always
71: use the first covariate V1 into the model but in fact they are
72: producing data with many covariates and can use an equation model
73: with some of the covariate; it means that in a model V2+V3 instead
74: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
75: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
76: the equation model is restricted to two variables only (V2, V3)
77: and the combination for V2 should be codtabm(k,1) instead of
78: (codtabm(k,2), and the code should be
79: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
80: made. All of these should be simplified once a day like we did in
81: hpxij() for example by using precov[nres] which is computed in
82: decoderesult for each nres of each resultline. Loop should be done
83: on the equation model globally by distinguishing only product with
84: age (which are changing with age) and no more on type of
85: covariates, single dummies, single covariates.
86:
87: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
88:
89: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
90:
91: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
92:
93: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
94:
1.55 brouard 95: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
96:
97: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
98: coredumped, revealed by Feiuno, thank you.
1.57 brouard 99:
100: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
101:
102: * r29 W and not sqrt(Wald)
103:
104: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
105:
106: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
107:
1.55 brouard 108: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
109:
110: * imach.c (Module): Adding the Wald tests from the log to the main
111: htm for better display of the maximum likelihood estimators.
112:
113: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
114:
115: * imach.c: With products of covariates (age or dummies or
116: quantitatives), estimates of parameters were good but when
117: estimating variances the positions of newly created covariates
118: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
119:
120: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
121:
122: * imach.c (Module): Some attempts to find a bug of wrong estimates
123: of confidencce intervals with product in the equation modelC
124:
125: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
126:
127: * imach.c (Module): Some minor improvements
128:
129: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
130:
131: * imach.c (Module): Adding link to text data files
132:
133: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
134:
135: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
136:
137: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
138:
139: * imach.c (Module): Fixed covariates (dummy or quantitative)
140: with missing values have never been allowed but are ERRORS and
141: program quits. Standard deviations of fixed covariates were
142: wrongly computed. Mean and standard deviations of time varying
143: covariates are still not computed.
144:
145: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
146:
147: * 99r25 Improvements in fixing discrepancies between covariates
148: missing in result line but in model.
149:
150: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
151: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
152:
153: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
154:
155: * ./ (Module): Fixed bug on result:
156:
157: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
158:
159: * imach.c (Module): Fix bug on quitting after result lines!
160: (Module): Version 0.99r21
161:
162: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
163:
164: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
165:
166:
167: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
168:
169: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
170:
171: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
172:
173: * (Module): imach.c Update mle=-3 (for computing Life expectancy
174: and life table from the data without any state)
175:
176: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
177:
178: * version.h: Summary: version 0.99.r19
179:
180: * imach.c: Summary: Projection syntax simplified
181: We can now start projections, forward or backward, from the mean date
182: of inteviews up to or down to a number of years of projection:
183: prevforecast=1 yearsfproj=15.3 mobil_average=0
184: or
185: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
186: or
187: prevbackcast=1 yearsbproj=12.3 mobil_average=1
188: or
189: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
190:
191: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
192:
193: * imach.c: Summary: doxygen tex bug
194:
195: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
196:
197: * imach.c: Summary: There was some wrong lines added
198:
199: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
200:
201: * Makefile, imach.c: *** empty log message ***
202:
203: * ChangeLog: Summary: C=
204:
205: * imach.c: Summary: Some updates
206:
207: * imach.c: Summary: Before ncovmax
208:
209: * version.h: *** empty log message ***
210:
211: * imach.c: Summary: 0.99r18 unlimited number of individuals
212: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
213:
214: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
215:
216: * imach.c: Summary: Bug for young ages (<-30) will be in r17
217:
218: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
219:
220: * Makefile: Summary: 0.99r16
221:
222: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
223:
224: * imach.c: Summary: Some bugs fixed
225:
226: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
227:
228: * imach.c: Summary: Bug for young ages (<-30) will be in r17
229:
230: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
231:
232: * imach.c: Summary: Some bugs fixed
233:
234: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
235:
236: * imach.c:
237: Summary: Bug fixed by providing frequencies only for non missing covariates
238:
239: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
240:
241: * imach.c: Summary: some minor bugs
242:
243: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
244:
245: * README.txt: *** empty log message ***
246:
247: * imach.c: Summary: Some bugs fixed, valgrind tested
248:
249: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
250:
251: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
252:
253: * imach.c:
254: Summary: Computing mean and stdeviation of fixed quantitative variables
255:
256: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
257:
258: * imach.c: Summary: Some minor bugs fixed
259:
260: * version.h: *** empty log message ***
261:
262: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
263:
264: * imach.c: *** empty log message ***
265:
266: * imach.c: Summary: Adding second argument for quitting
267:
268: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
269:
270: * Makefile, README.txt, imach.c: Summary: 0.99r15
271: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
272:
273: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
274:
275: * imach.c: Summary: temporary working
276:
277: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
278:
279: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
280:
281: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
282:
283: * imach.c: Summary: BOM files can be read now
284:
285: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
286:
287: * imach.c: Summary: Graphs improvements
288:
289: * imach.c: Summary: Saito's color
290:
291: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
292:
293: * imach.c: Summary: Version 0.99r14
294:
295: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
296:
297: * imach.c: Summary: More documentation on projections
298:
299: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
300:
301: * imach.c: Summary: Some bug with rint
302:
303: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
304:
305: * imach.c: *** empty log message ***
306:
307: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
308:
309: * imach.c: Summary: Code into subroutine, cleanings
310:
311: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
312:
313: * imach.c:
314: Summary: backprojection and confidence intervals of backprevalence
315:
316: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
317:
318: * imach.c: Summary: temporary save for backprojection
319:
320: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
321:
322: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
323:
324: * imach.c: Summary: imach 0.99r13 Some bugs fixed
325:
326: * imach.c: Summary: Labels in graphs
327:
328: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
329:
330: * imach.c: Summary: to save
331:
332: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
333:
334: * imach.c: *** empty log message ***
335:
336: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
337:
338: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
339:
340: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
341:
342: * imach.c: Summary: Gnuplot indexations fixed (humm)
343:
344: * imach.c:
345: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
346:
347: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
348:
349: * imach.c: Summary: Version 0.99r12
350: Some cleanings, conformed with updated documentation.
351:
352: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
353:
354: * version.h: *** empty log message ***
355:
356: * version.h: Summary:0.99r11
357:
358: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
359:
360: * imach.c: Summary: Temp
361:
362: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
363:
364: * imach.c: Summary: Temporary
365:
366: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
367:
368: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
369:
370: * imach.c: Summary: Fixing data parameter line
371:
372: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
373:
374: * imach.c: Summary: 0.99 in progress
375:
376: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
377:
378: * imach.c: *** empty log message ***
379:
380: * imach.c: Summary: not working
381:
382: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
383:
384: * imach.c: Summary: continue
385:
386: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
387:
388: * imach.c: Summary: Starting values from frequencies
389:
390: * imach.c: *** empty log message ***
391:
392: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
393:
394: * imach.c: *** empty log message ***
395:
396: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
397:
398: * imach.c: Summary: Fixing a lots
399:
400: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
401:
402: * imach.c: Summary: gnuplot problem in Back projection to fix
403:
404: * imach.c: Summary: Better
405:
406: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
407:
408: * imach.c:
409: Summary: Improvement in Powell output in order to copy and paste
410:
411: * imach.c: Summary: Starting tests of 0.99
412:
413: * imach.c: Summary: to valgrind
414:
415: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
416:
417: * imach.c: *** empty log message ***
418:
419: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
420:
421: * imach.c: *** empty log message ***
422:
423: * imach.c: Summary: not working
424:
425: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
426:
427: * imach.c: Summary: not working
428:
429: * imach.c: Summary: Not working
430:
431: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
432:
433: * imach.c: Summary: Completing for func too
434:
435: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
436:
437: * imach.c: Summary: Fixing some arrays, still debugging
438:
439: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
440:
441: * imach.c:
442: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
443:
444: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
445:
446: * imach.c: Summary: temp
447:
448: * imach.c: Summary: saving but not running
449:
450: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
451:
452: * imach.c: Summary: Fixes
453:
454: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
455:
456: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
457:
458: * setup.iss, Makefile, version.h: *** empty log message ***
459:
460: * imach.c: Summary: temporary
461:
462: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
463:
464: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
465:
466: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
467:
468: * imach.c: Summary: minor bug
469:
470: * imach.c: Summary: 0.99r2
471:
472: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
473:
474: * imach.c: *** empty log message ***
475:
476: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
477:
478: * imach.c: Summary: 0.99 Back projections
479:
480: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
481:
482: * imach.c: Summary: Experimental backcast
483:
484: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
485:
486: * imach.c: Summary: 0.98r4 Warning and status=-2
487:
488: Version 0.98r4 is now:
489: - displaying an error when status is -1, date of interview unknown and date of death known;
490: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
491: Older changes concerning s=-2, dating from 2005 have been supersed.
492:
493: * Makefile: *** empty log message ***
494:
495: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
496:
497: * Makefile: *** empty log message ***
498:
499: * imach.c: Summary: 0.98r4 working
500:
501: * Makefile: Summary: linuxrpm added
502:
503: * Makefile: *** empty log message ***
504:
505: * imach.c: Summary: temporary not working
506:
507: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
508:
509: * imach.c: Summary: 0.98r4
510:
511: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
512:
513: * Makefile: *** empty log message ***
514:
515: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
516:
517: * Makefile:
518: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
519:
520: * imach.c: Summary: minor typo
521:
522: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
523:
524: Author: Nicolas Brouard
525:
526: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
527:
528: * imach.c: Summary: Start working on projected prevalences
529:
530: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
531:
532: * imach.c: Summary: Adding ftolpl parameter
533: Author: N Brouard
534:
535: We had difficulties to get smoothed confidence intervals. It was due
536: to the period prevalence which wasn't computed accurately. The inner
537: parameter ftolpl is now an outer parameter of the .imach parameter
538: file after estepm. If ftolpl is small 1.e-4 and estepm too,
539: computation are long.
540:
541: * version.h: *** empty log message ***
542:
543: * imach.c: Summary: temporary
544:
545: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
546:
547: * Makefile: *** empty log message ***
548:
549: * setup.iss.in: Summary: some new subdirs
550:
551: * imach.c: *** empty log message ***
552:
553: * setup.iss.in:
554: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
555:
556: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
557:
558: * imach.c: *** empty log message ***
559:
560: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
561:
562: * imach.c:
563: Summary: 0.98r3 some clarification for graphs on likelihood contributions
564:
565: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
566:
567: * imach.c: Summary: Some new graphs of contribution to likelihood
568:
569: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
570:
571: * Makefile:
572: Summary: Version read from version.h, itself read with cmake
573:
574: * imach.c: Summary: looking at better estimation of the hessian
575:
576: Also a better criteria for convergence to the period prevalence And
577: therefore adding the number of years needed to converge. (The
578: prevalence in any alive state shold sum to one
579:
580: * Makefile: *** empty log message ***
581:
582: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
583:
584: * imach.c:
585: Summary: Adding some overall graph on contribution to likelihood. Might change
586:
587: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
588:
589: * Makefile: *** empty log message ***
590:
591: * imach.c: Summary: 0.98r0
592:
593: - Some new graphs like survival functions
594: - Some bugs fixed like model=1+age+V2.
595:
596: * ChangeLog, Makefile: Summary: 0.98r0
597:
598: * CMakeLists.txt: Summary: Some tests for setup.iss
599:
600: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
601:
602: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
603:
604: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
605:
606: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
607:
608: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
609:
610: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
611:
612: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
613:
614: * imach.c (Module): Merging 1.61 to 1.162
615:
616: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
617:
618: * prevlim.h (Module):
619:
620: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
621:
622: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
623: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
624:
625: 2010-04-29 brouard <brouard@ined.fr>
626:
627: * imach.c (Module): Checking covariates for more complex models
628: than V1+V2. A lot of change to be done. Unstable.
629:
630: 2010-04-26 brouard <brouard@ined.fr>
631:
632: * imach.c (Module): merging some libgsl code. Fixing computation
633: of likelione (using inter/intrapolation if mle = 0) in order to
634: get same likelihood as if mle=1.
635: Some cleaning of code and comments added.
636:
637: 2009-10-29 brouard <brouard@ined.fr>
638:
639: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
640:
641: 2006-06-30 Brouard Nicolas <brouard@localhost>
642:
643: * imach.c (Module): Clarifications on computing e.j
644:
645: 2006-04-28 Brouard Nicolas <brouard@localhost>
646:
647: * imach.c (Module): Yes the sum of survivors was wrong since
648: imach-114 because nhstepm was no more computed in the age
649: loop. Now we define nhstepma in the age loop.
650: (Module): In order to speed up (in case of numerous covariates) we
651: compute health expectancies (without variances) in a first step
652: and then all the health expectancies with variances or standard
653: deviation (needs data from the Hessian matrices) which slows the
654: computation.
655: In the future we should be able to stop the program is only health
656: expectancies and graph are needed without standard deviations.
657:
658: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
659:
660: * imach.iss (Module):
661:
662: * imach.c (Module): bugs in evsi + population file added in htm output file
663:
664: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
665:
666: * imach.c (Module):
667:
668: 2006-03-20 Brouard Nicolas <brouard@localhost>
669:
670: * imach.c (Module): <title> changed, corresponds to .htm file
671: name. <head> headers where missing.
672:
673: * Makefile (Module): 0.98g
674:
675: * imach.c (Module): Weights can have a decimal point as for
676: English (a comma might work with a correct LC_NUMERIC environment,
677: otherwise the weight is truncated).
678: Modification of warning when the covariates values are not 0 or
679: 1.
680: Version 0.98g
681:
682: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
683:
684: * imach.c (Module): Comments concerning covariates added
685:
686: * noreg-setup.iss (Module): Version 0.98f
687:
688: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
689:
690: * imach.c (Module): refinements in the computation of lli if
691: status=-2 in order to have more reliable computation if stepm is
692: not 1 month. Version 0.98f
693:
694: 2006-03-15 Brouard Nicolas <brouard@localhost>
695:
696: * imach.c (Module): Bug if status = -2, the loglikelihood was
697: computed as likelihood omitting the logarithm. Version O.98e
698:
699: 2006-03-14 Brouard Nicolas <brouard@localhost>
700:
701: * imach.c (Module): varevsij Comments added explaining the second
702: table of variances if popbased=1 .
703: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
704: (Module): Function pstamp added
705: (Module): Version 0.98d
706:
707: 2006-03-06 Brouard Nicolas <brouard@localhost>
708:
709: * imach.c (Module): Variance-covariance wrong links and
710: varian-covariance of ej. is needed (Saito).
711:
712: 2006-02-27 Brouard Nicolas <brouard@localhost>
713:
714: * imach.c (Module): One freematrix added in mlikeli!
715:
716: 2006-02-26 Brouard Nicolas <brouard@localhost>
717:
718: * imach.c (Module): Some improvements in processing parameter
719: filename with strsep.
720:
721: 2006-02-24 Brouard Nicolas <brouard@localhost>
722:
723: * imach.c (Module): Memory leaks checks with valgrind and:
724: datafile was not closed, some imatrix were not freed and on matrix
725: allocation too.
726:
727: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
728:
729: * strsep.c (Module): Inclusion because not in mingw32!!!
730:
731: * setup.iss.in (Module): IMACHSETUPVERSION added
732:
733: * noreg-setup.iss (Module): added to cvs tree
734:
735: * Makefile (Module): IMACHSETUPVERSION added
736:
737: 2006-01-30 BROUARD Nicolas <brouard@localhost>
738:
739: * Makefile (Module, Module): Latest Makefile
740:
741: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
742:
743: 2006-01-27 BROUARD Nicolas <brouard@localhost>
744:
745: * noreg-setup.iss (Module): ADDED
746:
747: 2006-01-24 BROUARD Nicolas <brouard@localhost>
748:
749: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
750:
751: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
752:
753: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
754:
755: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
756:
757: 2005-09-30 <lievre@PC_00595>
758:
759: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
760: (Module): If the status is missing at the last wave but we know
761: that the person is alive, then we can code his/her status as -2
762: (instead of missing=-1 in earlier versions) and his/her
763: contributions to the likelihood is 1 - Prob of dying from last
764: health status (= 1-p13= p11+p12 in the easiest case of somebody in
765: the healthy state at last known wave). Version is 0.98
766:
767: 2004-05-20 Brouard Nicolas <brouard@localhost>
768:
769: * imach.c (Repository):
770: Agnes added a direct estimation of mortality (without the need of
771: computing period prevalence and differential mortality). Thus here
772: is version 0.97a which has been distributed to some people at
773: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
774: mortality using covariates is not done today. Estimating direct
775: mortality is a very different process because it doesn't need
776: interpolation because it is easy to get the lx from the force of
777: the mortality mux in the simplest case as for a Gompertz (log mux
778: = a + b*x . But we have been able to incorporate the new code
779: within former imach program (0.96d) without deteriorating too much
780: the understanding of the program.
781:
782: 2003-06-25 <brouard@BROUARD>
783:
784: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
785: exist so I changed back to asctime which exists.
786: (Module): Version 0.96b
787:
788: 2003-06-24 <brouard@BROUARD>
789:
790: * imach.c (Module): Some bugs corrected for windows. Also, when
791: mle=-1 a template is output in file "or"mypar.txt with the design
792: of the covariance matrix to be input.
793:
794: 2003-06-25 Brouard Nicolas <brouard@homebrou>
795:
796: * imach.c (Repository): Duplicated warning errors corrected.
797: (Repository): Elapsed time after each iteration is now output. It
798: helps to forecast when convergence will be reached. Elapsed time
799: is stamped in powell. We created a new html file for the graphs
800: concerning matrix of covariance. It has extension -cov.htm.
801:
802: 2003-06-23 Brouard Nicolas <brouard@homebrou>
803:
804: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
805:
806: 2003-06-18 Brouard Nicolas <brouard@homebrou>
807:
808: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
809:
810: 2003-06-17 Brouard Nicolas <brouard@homebrou>
811:
812:
813: * imach.c (Repository): Check when date of death was earlier that
814: current date of interview. It may happen when the death was just
815: prior to the death. In this case, dh was negative and likelihood
816: was wrong (infinity). We still send an "Error" but patch by
817: assuming that the date of death was just one stepm after the
818: interview.
819: (Repository): Because some people have very long ID (first column)
820: we changed int to long in num[] and we added a new lvector for
821: memory allocation. But we also truncated to 8 characters (left
822: truncation)
823:
824: (Repository): No more line truncation errors.
825:
826: 2003-06-14 Brouard Nicolas <brouard@homebrou>
827:
828: * imach.c (Repository): Add of a routine likelione (likelihood
829: only once) which prints on a text file
830: (ilk) the contributions to the likelihood for each
831: individual/wave.
832:
833: 2003-06-13 Brouard Nicolas <brouard@homebrou>
834: * imach.c (Repository): Replace "freqsummary" at a correct
835: place. It differs from routine "prevalence" which may be called
836: many times. Probs is memory consuming and must be used with
837: parcimony.
838:
839: 2003-06-17 <brouard@BROUARD>
840:
841: * timeval.h (Module): Added included file to make use of
842: gettimeofday working on win32 with cygwin.
843:
844: 2003-05-16 Brouard Nicolas <brouard@brouard>
845: * imach.c (Module): Insert of a warning if the delay between two
846: waves is negative.
847:
848: * imach.c (Module):
849:
850: 2003-05-03 <brouard@BROUARD>
851:
852: * imach.c: Some cleaning
853:
854: 2003-03-28 <brouard@BROUARD>
855: * imach.c (Module): In version up to 0.92 likelihood was computed
856: as if date of death was unknown. Death was treated as any other
857: health state: the date of the interview describes the actual state
858: and not the date of a change in health state. The former idea was
859: to consider that at each interview the state was recorded
860: (healthy, disable or death) and IMaCh was corrected; but when we
861: introduced the exact date of death then we should have modified
862: the contribution of an exact death to the likelihood. This new
863: contribution is smaller and very dependent of the step unit
864: stepm. It is no more the probability to die between last interview
865: and month of death but the probability to survive from last
866: interview up to one month before death multiplied by the
867: probability to die within a month. Thanks to Chris
868: Jackson for correcting this bug. Former versions increased
869: mortality artificially. The bad side is that we add another loop
870: which slows down the processing. The difference can be up to 10%
871: lower mortality.
872:
873: 2002-05-30 <brouard@BROUARD>
1.57 brouard 874:
1.55 brouard 875: * imach.c (Module): Add correlation matrix of one-step
876: probabilities and covariance matrix
1.54 brouard 877:
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