Annotation of imach/src/ChangeLog, revision 1.64
1.63 brouard 1: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
2:
3: * imach.c (Module): Inverting the model equation and fixingg bugs
4: in the drawings
5: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
6:
7: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
8:
9: * imach.c (Module): some bugs in printinggnuplot
10:
1.62 brouard 11: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
12:
13: * imach.c (Module): Version 0.99r42 needed a newer version of
14: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
15: version 5.0 or 5.1 distributed with IMaCh.
16:
1.61 brouard 17: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
18:
19: * imach.c (Module): Fixing when a state in the data is 0 or higher
20: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
21:
1.63 brouard 22: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
23:
24: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
25:
26: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
27:
28: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
29:
1.61 brouard 30: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
31:
32: * imach.c (Module): Version 0.99r39 with colored dummy covariates
33: (fixed or time varying), using new last columns of
34: ILK_parameter.txt file.
35:
1.60 brouard 36: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
37:
38: * imach.c (Module): Adding timevarying products of any kinds,
39: should work before shifting cotvar from ncovcol+nqv columns in
40: order to have a correspondance between the column of cotvar and
41: the id of column.
1.61 brouard 42: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 43:
44: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
45:
46: * imach.c (Module): Many improvements for fixing products of fixed
47: timevarying as well as fixed * fixed, and test with quantitative
48: covariate.
49:
1.59 brouard 50: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
51:
52: * imach.c (Module): Now the easy runs i.e. without result or
53: model=1+age only did not work. The defautl combination should be 1
54: and not 0 because everything hasn't been tranformed yet.
55:
56: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
57:
58: * imach.c: Version 0.99r35 because it outputs same results with
59: 1+age+V1+V1*age for females and 1+age for females only
60: (education=1 noweight)
61:
1.58 brouard 62: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
63:
64: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
65:
1.56 brouard 66: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
67:
68: * imach.c (Module): Version 0.99r33 A lot of changes in
69: reassigning covariates: my first idea was that people will always
70: use the first covariate V1 into the model but in fact they are
71: producing data with many covariates and can use an equation model
72: with some of the covariate; it means that in a model V2+V3 instead
73: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
74: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
75: the equation model is restricted to two variables only (V2, V3)
76: and the combination for V2 should be codtabm(k,1) instead of
77: (codtabm(k,2), and the code should be
78: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
79: made. All of these should be simplified once a day like we did in
80: hpxij() for example by using precov[nres] which is computed in
81: decoderesult for each nres of each resultline. Loop should be done
82: on the equation model globally by distinguishing only product with
83: age (which are changing with age) and no more on type of
84: covariates, single dummies, single covariates.
85:
86: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
87:
88: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
89:
90: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
91:
92: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
93:
1.55 brouard 94: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
95:
96: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
97: coredumped, revealed by Feiuno, thank you.
1.57 brouard 98:
99: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
100:
101: * r29 W and not sqrt(Wald)
102:
103: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
104:
105: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
106:
1.55 brouard 107: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
108:
109: * imach.c (Module): Adding the Wald tests from the log to the main
110: htm for better display of the maximum likelihood estimators.
111:
112: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
113:
114: * imach.c: With products of covariates (age or dummies or
115: quantitatives), estimates of parameters were good but when
116: estimating variances the positions of newly created covariates
117: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
118:
119: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
120:
121: * imach.c (Module): Some attempts to find a bug of wrong estimates
122: of confidencce intervals with product in the equation modelC
123:
124: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
125:
126: * imach.c (Module): Some minor improvements
127:
128: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
129:
130: * imach.c (Module): Adding link to text data files
131:
132: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
133:
134: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
135:
136: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
137:
138: * imach.c (Module): Fixed covariates (dummy or quantitative)
139: with missing values have never been allowed but are ERRORS and
140: program quits. Standard deviations of fixed covariates were
141: wrongly computed. Mean and standard deviations of time varying
142: covariates are still not computed.
143:
144: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
145:
146: * 99r25 Improvements in fixing discrepancies between covariates
147: missing in result line but in model.
148:
149: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
150: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
151:
152: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
153:
154: * ./ (Module): Fixed bug on result:
155:
156: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
157:
158: * imach.c (Module): Fix bug on quitting after result lines!
159: (Module): Version 0.99r21
160:
161: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
162:
163: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
164:
165:
166: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
167:
168: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
169:
170: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
171:
172: * (Module): imach.c Update mle=-3 (for computing Life expectancy
173: and life table from the data without any state)
174:
175: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
176:
177: * version.h: Summary: version 0.99.r19
178:
179: * imach.c: Summary: Projection syntax simplified
180: We can now start projections, forward or backward, from the mean date
181: of inteviews up to or down to a number of years of projection:
182: prevforecast=1 yearsfproj=15.3 mobil_average=0
183: or
184: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
185: or
186: prevbackcast=1 yearsbproj=12.3 mobil_average=1
187: or
188: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
189:
190: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
191:
192: * imach.c: Summary: doxygen tex bug
193:
194: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
195:
196: * imach.c: Summary: There was some wrong lines added
197:
198: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
199:
200: * Makefile, imach.c: *** empty log message ***
201:
202: * ChangeLog: Summary: C=
203:
204: * imach.c: Summary: Some updates
205:
206: * imach.c: Summary: Before ncovmax
207:
208: * version.h: *** empty log message ***
209:
210: * imach.c: Summary: 0.99r18 unlimited number of individuals
211: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
212:
213: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
214:
215: * imach.c: Summary: Bug for young ages (<-30) will be in r17
216:
217: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
218:
219: * Makefile: Summary: 0.99r16
220:
221: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
222:
223: * imach.c: Summary: Some bugs fixed
224:
225: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
226:
227: * imach.c: Summary: Bug for young ages (<-30) will be in r17
228:
229: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
230:
231: * imach.c: Summary: Some bugs fixed
232:
233: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
234:
235: * imach.c:
236: Summary: Bug fixed by providing frequencies only for non missing covariates
237:
238: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
239:
240: * imach.c: Summary: some minor bugs
241:
242: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
243:
244: * README.txt: *** empty log message ***
245:
246: * imach.c: Summary: Some bugs fixed, valgrind tested
247:
248: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
249:
250: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
251:
252: * imach.c:
253: Summary: Computing mean and stdeviation of fixed quantitative variables
254:
255: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
256:
257: * imach.c: Summary: Some minor bugs fixed
258:
259: * version.h: *** empty log message ***
260:
261: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
262:
263: * imach.c: *** empty log message ***
264:
265: * imach.c: Summary: Adding second argument for quitting
266:
267: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
268:
269: * Makefile, README.txt, imach.c: Summary: 0.99r15
270: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
271:
272: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
273:
274: * imach.c: Summary: temporary working
275:
276: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
277:
278: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
279:
280: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
281:
282: * imach.c: Summary: BOM files can be read now
283:
284: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
285:
286: * imach.c: Summary: Graphs improvements
287:
288: * imach.c: Summary: Saito's color
289:
290: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
291:
292: * imach.c: Summary: Version 0.99r14
293:
294: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
295:
296: * imach.c: Summary: More documentation on projections
297:
298: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
299:
300: * imach.c: Summary: Some bug with rint
301:
302: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
303:
304: * imach.c: *** empty log message ***
305:
306: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
307:
308: * imach.c: Summary: Code into subroutine, cleanings
309:
310: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
311:
312: * imach.c:
313: Summary: backprojection and confidence intervals of backprevalence
314:
315: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
316:
317: * imach.c: Summary: temporary save for backprojection
318:
319: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
320:
321: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
322:
323: * imach.c: Summary: imach 0.99r13 Some bugs fixed
324:
325: * imach.c: Summary: Labels in graphs
326:
327: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
328:
329: * imach.c: Summary: to save
330:
331: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
332:
333: * imach.c: *** empty log message ***
334:
335: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
336:
337: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
338:
339: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
340:
341: * imach.c: Summary: Gnuplot indexations fixed (humm)
342:
343: * imach.c:
344: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
345:
346: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
347:
348: * imach.c: Summary: Version 0.99r12
349: Some cleanings, conformed with updated documentation.
350:
351: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
352:
353: * version.h: *** empty log message ***
354:
355: * version.h: Summary:0.99r11
356:
357: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
358:
359: * imach.c: Summary: Temp
360:
361: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
362:
363: * imach.c: Summary: Temporary
364:
365: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
366:
367: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
368:
369: * imach.c: Summary: Fixing data parameter line
370:
371: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
372:
373: * imach.c: Summary: 0.99 in progress
374:
375: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
376:
377: * imach.c: *** empty log message ***
378:
379: * imach.c: Summary: not working
380:
381: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
382:
383: * imach.c: Summary: continue
384:
385: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
386:
387: * imach.c: Summary: Starting values from frequencies
388:
389: * imach.c: *** empty log message ***
390:
391: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
392:
393: * imach.c: *** empty log message ***
394:
395: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
396:
397: * imach.c: Summary: Fixing a lots
398:
399: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
400:
401: * imach.c: Summary: gnuplot problem in Back projection to fix
402:
403: * imach.c: Summary: Better
404:
405: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
406:
407: * imach.c:
408: Summary: Improvement in Powell output in order to copy and paste
409:
410: * imach.c: Summary: Starting tests of 0.99
411:
412: * imach.c: Summary: to valgrind
413:
414: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
415:
416: * imach.c: *** empty log message ***
417:
418: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
419:
420: * imach.c: *** empty log message ***
421:
422: * imach.c: Summary: not working
423:
424: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
425:
426: * imach.c: Summary: not working
427:
428: * imach.c: Summary: Not working
429:
430: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
431:
432: * imach.c: Summary: Completing for func too
433:
434: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
435:
436: * imach.c: Summary: Fixing some arrays, still debugging
437:
438: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
439:
440: * imach.c:
441: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
442:
443: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
444:
445: * imach.c: Summary: temp
446:
447: * imach.c: Summary: saving but not running
448:
449: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
450:
451: * imach.c: Summary: Fixes
452:
453: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
454:
455: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
456:
457: * setup.iss, Makefile, version.h: *** empty log message ***
458:
459: * imach.c: Summary: temporary
460:
461: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
462:
463: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
464:
465: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
466:
467: * imach.c: Summary: minor bug
468:
469: * imach.c: Summary: 0.99r2
470:
471: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
472:
473: * imach.c: *** empty log message ***
474:
475: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
476:
477: * imach.c: Summary: 0.99 Back projections
478:
479: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
480:
481: * imach.c: Summary: Experimental backcast
482:
483: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
484:
485: * imach.c: Summary: 0.98r4 Warning and status=-2
486:
487: Version 0.98r4 is now:
488: - displaying an error when status is -1, date of interview unknown and date of death known;
489: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
490: Older changes concerning s=-2, dating from 2005 have been supersed.
491:
492: * Makefile: *** empty log message ***
493:
494: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
495:
496: * Makefile: *** empty log message ***
497:
498: * imach.c: Summary: 0.98r4 working
499:
500: * Makefile: Summary: linuxrpm added
501:
502: * Makefile: *** empty log message ***
503:
504: * imach.c: Summary: temporary not working
505:
506: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
507:
508: * imach.c: Summary: 0.98r4
509:
510: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
511:
512: * Makefile: *** empty log message ***
513:
514: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
515:
516: * Makefile:
517: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
518:
519: * imach.c: Summary: minor typo
520:
521: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
522:
523: Author: Nicolas Brouard
524:
525: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
526:
527: * imach.c: Summary: Start working on projected prevalences
528:
529: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
530:
531: * imach.c: Summary: Adding ftolpl parameter
532: Author: N Brouard
533:
534: We had difficulties to get smoothed confidence intervals. It was due
535: to the period prevalence which wasn't computed accurately. The inner
536: parameter ftolpl is now an outer parameter of the .imach parameter
537: file after estepm. If ftolpl is small 1.e-4 and estepm too,
538: computation are long.
539:
540: * version.h: *** empty log message ***
541:
542: * imach.c: Summary: temporary
543:
544: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
545:
546: * Makefile: *** empty log message ***
547:
548: * setup.iss.in: Summary: some new subdirs
549:
550: * imach.c: *** empty log message ***
551:
552: * setup.iss.in:
553: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
554:
555: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
556:
557: * imach.c: *** empty log message ***
558:
559: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
560:
561: * imach.c:
562: Summary: 0.98r3 some clarification for graphs on likelihood contributions
563:
564: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
565:
566: * imach.c: Summary: Some new graphs of contribution to likelihood
567:
568: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
569:
570: * Makefile:
571: Summary: Version read from version.h, itself read with cmake
572:
573: * imach.c: Summary: looking at better estimation of the hessian
574:
575: Also a better criteria for convergence to the period prevalence And
576: therefore adding the number of years needed to converge. (The
577: prevalence in any alive state shold sum to one
578:
579: * Makefile: *** empty log message ***
580:
581: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
582:
583: * imach.c:
584: Summary: Adding some overall graph on contribution to likelihood. Might change
585:
586: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
587:
588: * Makefile: *** empty log message ***
589:
590: * imach.c: Summary: 0.98r0
591:
592: - Some new graphs like survival functions
593: - Some bugs fixed like model=1+age+V2.
594:
595: * ChangeLog, Makefile: Summary: 0.98r0
596:
597: * CMakeLists.txt: Summary: Some tests for setup.iss
598:
599: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
600:
601: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
602:
603: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
604:
605: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
606:
607: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
608:
609: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
610:
611: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
612:
613: * imach.c (Module): Merging 1.61 to 1.162
614:
615: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
616:
617: * prevlim.h (Module):
618:
619: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
620:
621: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
622: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
623:
624: 2010-04-29 brouard <brouard@ined.fr>
625:
626: * imach.c (Module): Checking covariates for more complex models
627: than V1+V2. A lot of change to be done. Unstable.
628:
629: 2010-04-26 brouard <brouard@ined.fr>
630:
631: * imach.c (Module): merging some libgsl code. Fixing computation
632: of likelione (using inter/intrapolation if mle = 0) in order to
633: get same likelihood as if mle=1.
634: Some cleaning of code and comments added.
635:
636: 2009-10-29 brouard <brouard@ined.fr>
637:
638: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
639:
640: 2006-06-30 Brouard Nicolas <brouard@localhost>
641:
642: * imach.c (Module): Clarifications on computing e.j
643:
644: 2006-04-28 Brouard Nicolas <brouard@localhost>
645:
646: * imach.c (Module): Yes the sum of survivors was wrong since
647: imach-114 because nhstepm was no more computed in the age
648: loop. Now we define nhstepma in the age loop.
649: (Module): In order to speed up (in case of numerous covariates) we
650: compute health expectancies (without variances) in a first step
651: and then all the health expectancies with variances or standard
652: deviation (needs data from the Hessian matrices) which slows the
653: computation.
654: In the future we should be able to stop the program is only health
655: expectancies and graph are needed without standard deviations.
656:
657: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
658:
659: * imach.iss (Module):
660:
661: * imach.c (Module): bugs in evsi + population file added in htm output file
662:
663: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
664:
665: * imach.c (Module):
666:
667: 2006-03-20 Brouard Nicolas <brouard@localhost>
668:
669: * imach.c (Module): <title> changed, corresponds to .htm file
670: name. <head> headers where missing.
671:
672: * Makefile (Module): 0.98g
673:
674: * imach.c (Module): Weights can have a decimal point as for
675: English (a comma might work with a correct LC_NUMERIC environment,
676: otherwise the weight is truncated).
677: Modification of warning when the covariates values are not 0 or
678: 1.
679: Version 0.98g
680:
681: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
682:
683: * imach.c (Module): Comments concerning covariates added
684:
685: * noreg-setup.iss (Module): Version 0.98f
686:
687: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
688:
689: * imach.c (Module): refinements in the computation of lli if
690: status=-2 in order to have more reliable computation if stepm is
691: not 1 month. Version 0.98f
692:
693: 2006-03-15 Brouard Nicolas <brouard@localhost>
694:
695: * imach.c (Module): Bug if status = -2, the loglikelihood was
696: computed as likelihood omitting the logarithm. Version O.98e
697:
698: 2006-03-14 Brouard Nicolas <brouard@localhost>
699:
700: * imach.c (Module): varevsij Comments added explaining the second
701: table of variances if popbased=1 .
702: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
703: (Module): Function pstamp added
704: (Module): Version 0.98d
705:
706: 2006-03-06 Brouard Nicolas <brouard@localhost>
707:
708: * imach.c (Module): Variance-covariance wrong links and
709: varian-covariance of ej. is needed (Saito).
710:
711: 2006-02-27 Brouard Nicolas <brouard@localhost>
712:
713: * imach.c (Module): One freematrix added in mlikeli!
714:
715: 2006-02-26 Brouard Nicolas <brouard@localhost>
716:
717: * imach.c (Module): Some improvements in processing parameter
718: filename with strsep.
719:
720: 2006-02-24 Brouard Nicolas <brouard@localhost>
721:
722: * imach.c (Module): Memory leaks checks with valgrind and:
723: datafile was not closed, some imatrix were not freed and on matrix
724: allocation too.
725:
726: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
727:
728: * strsep.c (Module): Inclusion because not in mingw32!!!
729:
730: * setup.iss.in (Module): IMACHSETUPVERSION added
731:
732: * noreg-setup.iss (Module): added to cvs tree
733:
734: * Makefile (Module): IMACHSETUPVERSION added
735:
736: 2006-01-30 BROUARD Nicolas <brouard@localhost>
737:
738: * Makefile (Module, Module): Latest Makefile
739:
740: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
741:
742: 2006-01-27 BROUARD Nicolas <brouard@localhost>
743:
744: * noreg-setup.iss (Module): ADDED
745:
746: 2006-01-24 BROUARD Nicolas <brouard@localhost>
747:
748: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
749:
750: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
751:
752: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
753:
754: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
755:
756: 2005-09-30 <lievre@PC_00595>
757:
758: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
759: (Module): If the status is missing at the last wave but we know
760: that the person is alive, then we can code his/her status as -2
761: (instead of missing=-1 in earlier versions) and his/her
762: contributions to the likelihood is 1 - Prob of dying from last
763: health status (= 1-p13= p11+p12 in the easiest case of somebody in
764: the healthy state at last known wave). Version is 0.98
765:
766: 2004-05-20 Brouard Nicolas <brouard@localhost>
767:
768: * imach.c (Repository):
769: Agnes added a direct estimation of mortality (without the need of
770: computing period prevalence and differential mortality). Thus here
771: is version 0.97a which has been distributed to some people at
772: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
773: mortality using covariates is not done today. Estimating direct
774: mortality is a very different process because it doesn't need
775: interpolation because it is easy to get the lx from the force of
776: the mortality mux in the simplest case as for a Gompertz (log mux
777: = a + b*x . But we have been able to incorporate the new code
778: within former imach program (0.96d) without deteriorating too much
779: the understanding of the program.
780:
781: 2003-06-25 <brouard@BROUARD>
782:
783: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
784: exist so I changed back to asctime which exists.
785: (Module): Version 0.96b
786:
787: 2003-06-24 <brouard@BROUARD>
788:
789: * imach.c (Module): Some bugs corrected for windows. Also, when
790: mle=-1 a template is output in file "or"mypar.txt with the design
791: of the covariance matrix to be input.
792:
793: 2003-06-25 Brouard Nicolas <brouard@homebrou>
794:
795: * imach.c (Repository): Duplicated warning errors corrected.
796: (Repository): Elapsed time after each iteration is now output. It
797: helps to forecast when convergence will be reached. Elapsed time
798: is stamped in powell. We created a new html file for the graphs
799: concerning matrix of covariance. It has extension -cov.htm.
800:
801: 2003-06-23 Brouard Nicolas <brouard@homebrou>
802:
803: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
804:
805: 2003-06-18 Brouard Nicolas <brouard@homebrou>
806:
807: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
808:
809: 2003-06-17 Brouard Nicolas <brouard@homebrou>
810:
811:
812: * imach.c (Repository): Check when date of death was earlier that
813: current date of interview. It may happen when the death was just
814: prior to the death. In this case, dh was negative and likelihood
815: was wrong (infinity). We still send an "Error" but patch by
816: assuming that the date of death was just one stepm after the
817: interview.
818: (Repository): Because some people have very long ID (first column)
819: we changed int to long in num[] and we added a new lvector for
820: memory allocation. But we also truncated to 8 characters (left
821: truncation)
822:
823: (Repository): No more line truncation errors.
824:
825: 2003-06-14 Brouard Nicolas <brouard@homebrou>
826:
827: * imach.c (Repository): Add of a routine likelione (likelihood
828: only once) which prints on a text file
829: (ilk) the contributions to the likelihood for each
830: individual/wave.
831:
832: 2003-06-13 Brouard Nicolas <brouard@homebrou>
833: * imach.c (Repository): Replace "freqsummary" at a correct
834: place. It differs from routine "prevalence" which may be called
835: many times. Probs is memory consuming and must be used with
836: parcimony.
837:
838: 2003-06-17 <brouard@BROUARD>
839:
840: * timeval.h (Module): Added included file to make use of
841: gettimeofday working on win32 with cygwin.
842:
843: 2003-05-16 Brouard Nicolas <brouard@brouard>
844: * imach.c (Module): Insert of a warning if the delay between two
845: waves is negative.
846:
847: * imach.c (Module):
848:
849: 2003-05-03 <brouard@BROUARD>
850:
851: * imach.c: Some cleaning
852:
853: 2003-03-28 <brouard@BROUARD>
854: * imach.c (Module): In version up to 0.92 likelihood was computed
855: as if date of death was unknown. Death was treated as any other
856: health state: the date of the interview describes the actual state
857: and not the date of a change in health state. The former idea was
858: to consider that at each interview the state was recorded
859: (healthy, disable or death) and IMaCh was corrected; but when we
860: introduced the exact date of death then we should have modified
861: the contribution of an exact death to the likelihood. This new
862: contribution is smaller and very dependent of the step unit
863: stepm. It is no more the probability to die between last interview
864: and month of death but the probability to survive from last
865: interview up to one month before death multiplied by the
866: probability to die within a month. Thanks to Chris
867: Jackson for correcting this bug. Former versions increased
868: mortality artificially. The bad side is that we add another loop
869: which slows down the processing. The difference can be up to 10%
870: lower mortality.
871:
872: 2002-05-30 <brouard@BROUARD>
1.57 brouard 873:
1.55 brouard 874: * imach.c (Module): Add correlation matrix of one-step
875: probabilities and covariance matrix
1.54 brouard 876:
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