Annotation of imach/src/ChangeLog, revision 1.65
1.63 brouard 1: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
2:
3: * imach.c (Module): Inverting the model equation and fixingg bugs
4: in the drawings
5: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
6:
7: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
8:
9: * imach.c (Module): some bugs in printinggnuplot
10:
1.62 brouard 11: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
12:
13: * imach.c (Module): Version 0.99r42 needed a newer version of
14: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
15: version 5.0 or 5.1 distributed with IMaCh.
16:
1.61 brouard 17: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
18:
19: * imach.c (Module): Fixing when a state in the data is 0 or higher
20: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
21:
1.63 brouard 22: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
23:
24: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
25:
26: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
27:
28: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
29:
1.61 brouard 30: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
31:
32: * imach.c (Module): Version 0.99r39 with colored dummy covariates
33: (fixed or time varying), using new last columns of
34: ILK_parameter.txt file.
35:
1.60 brouard 36: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
37:
38: * imach.c (Module): Adding timevarying products of any kinds,
39: should work before shifting cotvar from ncovcol+nqv columns in
40: order to have a correspondance between the column of cotvar and
41: the id of column.
1.61 brouard 42: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 43:
44: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
45:
46: * imach.c (Module): Many improvements for fixing products of fixed
47: timevarying as well as fixed * fixed, and test with quantitative
48: covariate.
49:
1.59 brouard 50: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
51:
52: * imach.c (Module): Now the easy runs i.e. without result or
53: model=1+age only did not work. The defautl combination should be 1
54: and not 0 because everything hasn't been tranformed yet.
55:
56: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
57:
58: * imach.c: Version 0.99r35 because it outputs same results with
59: 1+age+V1+V1*age for females and 1+age for females only
60: (education=1 noweight)
61:
1.58 brouard 62: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
63:
64: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
65:
1.56 brouard 66: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
67:
68: * imach.c (Module): Version 0.99r33 A lot of changes in
69: reassigning covariates: my first idea was that people will always
70: use the first covariate V1 into the model but in fact they are
71: producing data with many covariates and can use an equation model
72: with some of the covariate; it means that in a model V2+V3 instead
73: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
74: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
75: the equation model is restricted to two variables only (V2, V3)
76: and the combination for V2 should be codtabm(k,1) instead of
77: (codtabm(k,2), and the code should be
78: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
79: made. All of these should be simplified once a day like we did in
80: hpxij() for example by using precov[nres] which is computed in
81: decoderesult for each nres of each resultline. Loop should be done
82: on the equation model globally by distinguishing only product with
83: age (which are changing with age) and no more on type of
84: covariates, single dummies, single covariates.
85:
86: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
87:
88: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
89:
90: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
91:
92: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
93:
1.55 brouard 94: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
95:
96: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
97: coredumped, revealed by Feiuno, thank you.
1.57 brouard 98:
99: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
100:
101: * r29 W and not sqrt(Wald)
102:
103: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
104:
105: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
106:
1.55 brouard 107: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
108:
109: * imach.c (Module): Adding the Wald tests from the log to the main
1.65 ! brouard 110: htm for better display of the maximum likelihood estimators.
1.57 brouard 111:
1.65 ! brouard 112: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
! 113:
! 114: * imach.c: With products of covariates (age or dummies or
! 115: quantitatives), estimates of parameters were good but when
! 116: estimating variances the positions of newly created covariates
! 117: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
! 118:
! 119: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
! 120:
! 121: * imach.c (Module): Some attempts to find a bug of wrong estimates
! 122: of confidencce intervals with product in the equation modelC
! 123:
! 124: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
! 125:
! 126: * imach.c (Module): Some minor improvements
! 127:
! 128: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
! 129:
! 130: * imach.c (Module): Adding link to text data files
! 131:
! 132: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
! 133:
! 134: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
! 135:
! 136: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
! 137:
! 138: * imach.c (Module): Fixed covariates (dummy or quantitative)
! 139: with missing values have never been allowed but are ERRORS and
! 140: program quits. Standard deviations of fixed covariates were
! 141: wrongly computed. Mean and standard deviations of time varying
! 142: covariates are still not computed.
! 143:
! 144: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
! 145:
! 146: * 99r25 Improvements in fixing discrepancies between covariates
! 147: missing in result line but in model.
! 148:
! 149: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
! 150: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
! 151:
! 152: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
! 153:
! 154: * ./ (Module): Fixed bug on result:
! 155:
! 156: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
! 157:
! 158: * imach.c (Module): Fix bug on quitting after result lines!
! 159: (Module): Version 0.99r21
! 160:
! 161: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
! 162:
! 163: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
! 164:
! 165:
! 166: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
! 167:
! 168: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
! 169:
! 170: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
! 171:
! 172: * (Module): imach.c Update mle=-3 (for computing Life expectancy
! 173: and life table from the data without any state)
! 174:
! 175: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
! 176:
! 177: * version.h: Summary: version 0.99.r19
! 178:
! 179: * imach.c: Summary: Projection syntax simplified
! 180: We can now start projections, forward or backward, from the mean date
! 181: of inteviews up to or down to a number of years of projection:
! 182: prevforecast=1 yearsfproj=15.3 mobil_average=0
! 183: or
! 184: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
! 185: or
! 186: prevbackcast=1 yearsbproj=12.3 mobil_average=1
! 187: or
! 188: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
! 189:
! 190: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
! 191:
! 192: * imach.c: Summary: doxygen tex bug
! 193:
! 194: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
! 195:
! 196: * imach.c: Summary: There was some wrong lines added
! 197:
! 198: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
! 199:
! 200: * Makefile, imach.c: *** empty log message ***
! 201:
! 202: * ChangeLog: Summary: C=
! 203:
! 204: * imach.c: Summary: Some updates
! 205:
! 206: * imach.c: Summary: Before ncovmax
! 207:
! 208: * version.h: *** empty log message ***
! 209:
! 210: * imach.c: Summary: 0.99r18 unlimited number of individuals
! 211: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
! 212:
! 213: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
! 214:
! 215: * imach.c: Summary: Bug for young ages (<-30) will be in r17
! 216:
! 217: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
! 218:
! 219: * Makefile: Summary: 0.99r16
! 220:
! 221: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
! 222:
! 223: * imach.c: Summary: Some bugs fixed
! 224:
! 225: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
! 226:
! 227: * imach.c: Summary: Bug for young ages (<-30) will be in r17
! 228:
! 229: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
! 230:
! 231: * imach.c: Summary: Some bugs fixed
! 232:
! 233: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
! 234:
! 235: * imach.c:
! 236: Summary: Bug fixed by providing frequencies only for non missing covariates
! 237:
! 238: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
! 239:
! 240: * imach.c: Summary: some minor bugs
! 241:
! 242: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
! 243:
! 244: * README.txt: *** empty log message ***
! 245:
! 246: * imach.c: Summary: Some bugs fixed, valgrind tested
! 247:
! 248: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
! 249:
! 250: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
! 251:
! 252: * imach.c:
! 253: Summary: Computing mean and stdeviation of fixed quantitative variables
! 254:
! 255: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
! 256:
! 257: * imach.c: Summary: Some minor bugs fixed
! 258:
! 259: * version.h: *** empty log message ***
! 260:
! 261: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
! 262:
! 263: * imach.c: *** empty log message ***
! 264:
! 265: * imach.c: Summary: Adding second argument for quitting
! 266:
! 267: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
! 268:
! 269: * Makefile, README.txt, imach.c: Summary: 0.99r15
! 270: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
! 271:
! 272: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
! 273:
! 274: * imach.c: Summary: temporary working
! 275:
! 276: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
! 277:
! 278: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
! 279:
! 280: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
! 281:
! 282: * imach.c: Summary: BOM files can be read now
! 283:
! 284: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
! 285:
! 286: * imach.c: Summary: Graphs improvements
! 287:
! 288: * imach.c: Summary: Saito's color
! 289:
! 290: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
! 291:
! 292: * imach.c: Summary: Version 0.99r14
! 293:
! 294: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
! 295:
! 296: * imach.c: Summary: More documentation on projections
! 297:
! 298: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
! 299:
! 300: * imach.c: Summary: Some bug with rint
! 301:
! 302: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
! 303:
! 304: * imach.c: *** empty log message ***
! 305:
! 306: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
! 307:
! 308: * imach.c: Summary: Code into subroutine, cleanings
! 309:
! 310: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
! 311:
! 312: * imach.c:
! 313: Summary: backprojection and confidence intervals of backprevalence
! 314:
! 315: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
! 316:
! 317: * imach.c: Summary: temporary save for backprojection
! 318:
! 319: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
! 320:
! 321: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
! 322:
! 323: * imach.c: Summary: imach 0.99r13 Some bugs fixed
! 324:
! 325: * imach.c: Summary: Labels in graphs
! 326:
! 327: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
! 328:
! 329: * imach.c: Summary: to save
! 330:
! 331: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
! 332:
! 333: * imach.c: *** empty log message ***
! 334:
! 335: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
! 336:
! 337: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
! 338:
! 339: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
! 340:
! 341: * imach.c: Summary: Gnuplot indexations fixed (humm)
! 342:
! 343: * imach.c:
! 344: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
! 345:
! 346: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
! 347:
! 348: * imach.c: Summary: Version 0.99r12
! 349: Some cleanings, conformed with updated documentation.
! 350:
! 351: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
! 352:
! 353: * version.h: *** empty log message ***
! 354:
! 355: * version.h: Summary:0.99r11
! 356:
! 357: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
! 358:
! 359: * imach.c: Summary: Temp
! 360:
! 361: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
! 362:
! 363: * imach.c: Summary: Temporary
! 364:
! 365: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
! 366:
! 367: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
! 368:
! 369: * imach.c: Summary: Fixing data parameter line
! 370:
! 371: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
! 372:
! 373: * imach.c: Summary: 0.99 in progress
! 374:
! 375: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
! 376:
! 377: * imach.c: *** empty log message ***
! 378:
! 379: * imach.c: Summary: not working
! 380:
! 381: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
! 382:
! 383: * imach.c: Summary: continue
! 384:
! 385: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
! 386:
! 387: * imach.c: Summary: Starting values from frequencies
! 388:
! 389: * imach.c: *** empty log message ***
! 390:
! 391: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
! 392:
! 393: * imach.c: *** empty log message ***
! 394:
! 395: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
! 396:
! 397: * imach.c: Summary: Fixing a lots
! 398:
! 399: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
! 400:
! 401: * imach.c: Summary: gnuplot problem in Back projection to fix
! 402:
! 403: * imach.c: Summary: Better
! 404:
! 405: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
! 406:
! 407: * imach.c:
! 408: Summary: Improvement in Powell output in order to copy and paste
! 409:
! 410: * imach.c: Summary: Starting tests of 0.99
! 411:
! 412: * imach.c: Summary: to valgrind
! 413:
! 414: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
! 415:
! 416: * imach.c: *** empty log message ***
! 417:
! 418: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
! 419:
! 420: * imach.c: *** empty log message ***
! 421:
! 422: * imach.c: Summary: not working
! 423:
! 424: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
! 425:
! 426: * imach.c: Summary: not working
! 427:
! 428: * imach.c: Summary: Not working
! 429:
! 430: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
! 431:
! 432: * imach.c: Summary: Completing for func too
! 433:
! 434: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
! 435:
! 436: * imach.c: Summary: Fixing some arrays, still debugging
! 437:
! 438: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
! 439:
! 440: * imach.c:
! 441: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
! 442:
! 443: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
! 444:
! 445: * imach.c: Summary: temp
! 446:
! 447: * imach.c: Summary: saving but not running
! 448:
! 449: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
! 450:
! 451: * imach.c: Summary: Fixes
! 452:
! 453: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
! 454:
! 455: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
! 456:
! 457: * setup.iss, Makefile, version.h: *** empty log message ***
! 458:
! 459: * imach.c: Summary: temporary
! 460:
! 461: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
! 462:
! 463: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
! 464:
! 465: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
! 466:
! 467: * imach.c: Summary: minor bug
! 468:
! 469: * imach.c: Summary: 0.99r2
! 470:
! 471: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
! 472:
! 473: * imach.c: *** empty log message ***
! 474:
! 475: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
! 476:
! 477: * imach.c: Summary: 0.99 Back projections
! 478:
! 479: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
! 480:
! 481: * imach.c: Summary: Experimental backcast
! 482:
! 483: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
! 484:
! 485: * imach.c: Summary: 0.98r4 Warning and status=-2
! 486:
! 487: Version 0.98r4 is now:
! 488: - displaying an error when status is -1, date of interview unknown and date of death known;
! 489: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
! 490: Older changes concerning s=-2, dating from 2005 have been supersed.
! 491:
! 492: * Makefile: *** empty log message ***
! 493:
! 494: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
! 495:
! 496: * Makefile: *** empty log message ***
! 497:
! 498: * imach.c: Summary: 0.98r4 working
! 499:
! 500: * Makefile: Summary: linuxrpm added
! 501:
! 502: * Makefile: *** empty log message ***
! 503:
! 504: * imach.c: Summary: temporary not working
! 505:
! 506: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
! 507:
! 508: * imach.c: Summary: 0.98r4
! 509:
! 510: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
! 511:
! 512: * Makefile: *** empty log message ***
! 513:
! 514: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
! 515:
! 516: * Makefile:
! 517: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
! 518:
! 519: * imach.c: Summary: minor typo
! 520:
! 521: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
! 522:
! 523: Author: Nicolas Brouard
! 524:
! 525: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
! 526:
! 527: * imach.c: Summary: Start working on projected prevalences
! 528:
! 529: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
! 530:
! 531: * imach.c: Summary: Adding ftolpl parameter
! 532: Author: N Brouard
! 533:
! 534: We had difficulties to get smoothed confidence intervals. It was due
! 535: to the period prevalence which wasn't computed accurately. The inner
! 536: parameter ftolpl is now an outer parameter of the .imach parameter
! 537: file after estepm. If ftolpl is small 1.e-4 and estepm too,
! 538: computation are long.
! 539:
! 540: * version.h: *** empty log message ***
! 541:
! 542: * imach.c: Summary: temporary
! 543:
! 544: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
! 545:
! 546: * Makefile: *** empty log message ***
! 547:
! 548: * setup.iss.in: Summary: some new subdirs
! 549:
! 550: * imach.c: *** empty log message ***
! 551:
! 552: * setup.iss.in:
! 553: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
! 554:
! 555: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
! 556:
! 557: * imach.c: *** empty log message ***
! 558:
! 559: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
! 560:
! 561: * imach.c:
! 562: Summary: 0.98r3 some clarification for graphs on likelihood contributions
! 563:
! 564: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
! 565:
! 566: * imach.c: Summary: Some new graphs of contribution to likelihood
! 567:
! 568: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
! 569:
! 570: * Makefile:
! 571: Summary: Version read from version.h, itself read with cmake
! 572:
! 573: * imach.c: Summary: looking at better estimation of the hessian
! 574:
! 575: Also a better criteria for convergence to the period prevalence And
! 576: therefore adding the number of years needed to converge. (The
! 577: prevalence in any alive state shold sum to one
! 578:
! 579: * Makefile: *** empty log message ***
! 580:
! 581: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
! 582:
! 583: * imach.c:
! 584: Summary: Adding some overall graph on contribution to likelihood. Might change
! 585:
! 586: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
! 587:
! 588: * Makefile: *** empty log message ***
! 589:
! 590: * imach.c: Summary: 0.98r0
! 591:
! 592: - Some new graphs like survival functions
! 593: - Some bugs fixed like model=1+age+V2.
! 594:
! 595: * ChangeLog, Makefile: Summary: 0.98r0
! 596:
! 597: * CMakeLists.txt: Summary: Some tests for setup.iss
! 598:
! 599: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
! 600:
! 601: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
! 602:
! 603: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
! 604:
! 605: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
! 606:
! 607: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
! 608:
! 609: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
! 610:
! 611: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
! 612:
! 613: * imach.c (Module): Merging 1.61 to 1.162
! 614:
! 615: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
! 616:
! 617: * prevlim.h (Module):
! 618:
! 619: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
! 620:
! 621: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
! 622: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
! 623:
! 624: 2010-04-29 brouard <brouard@ined.fr>
! 625:
! 626: * imach.c (Module): Checking covariates for more complex models
! 627: than V1+V2. A lot of change to be done. Unstable.
! 628:
! 629: 2010-04-26 brouard <brouard@ined.fr>
! 630:
! 631: * imach.c (Module): merging some libgsl code. Fixing computation
! 632: of likelione (using inter/intrapolation if mle = 0) in order to
! 633: get same likelihood as if mle=1.
! 634: Some cleaning of code and comments added.
! 635:
! 636: 2009-10-29 brouard <brouard@ined.fr>
! 637:
! 638: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
! 639:
! 640: 2006-06-30 Brouard Nicolas <brouard@localhost>
! 641:
! 642: * imach.c (Module): Clarifications on computing e.j
! 643:
! 644: 2006-04-28 Brouard Nicolas <brouard@localhost>
! 645:
! 646: * imach.c (Module): Yes the sum of survivors was wrong since
! 647: imach-114 because nhstepm was no more computed in the age
! 648: loop. Now we define nhstepma in the age loop.
! 649: (Module): In order to speed up (in case of numerous covariates) we
! 650: compute health expectancies (without variances) in a first step
! 651: and then all the health expectancies with variances or standard
! 652: deviation (needs data from the Hessian matrices) which slows the
! 653: computation.
! 654: In the future we should be able to stop the program is only health
! 655: expectancies and graph are needed without standard deviations.
! 656:
! 657: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 658:
! 659: * imach.iss (Module):
! 660:
! 661: * imach.c (Module): bugs in evsi + population file added in htm output file
! 662:
! 663: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 664:
! 665: * imach.c (Module):
! 666:
! 667: 2006-03-20 Brouard Nicolas <brouard@localhost>
! 668:
! 669: * imach.c (Module): <title> changed, corresponds to .htm file
! 670: name. <head> headers where missing.
! 671:
! 672: * Makefile (Module): 0.98g
! 673:
! 674: * imach.c (Module): Weights can have a decimal point as for
! 675: English (a comma might work with a correct LC_NUMERIC environment,
! 676: otherwise the weight is truncated).
! 677: Modification of warning when the covariates values are not 0 or
! 678: 1.
! 679: Version 0.98g
! 680:
! 681: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 682:
! 683: * imach.c (Module): Comments concerning covariates added
! 684:
! 685: * noreg-setup.iss (Module): Version 0.98f
! 686:
! 687: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
! 688:
! 689: * imach.c (Module): refinements in the computation of lli if
! 690: status=-2 in order to have more reliable computation if stepm is
! 691: not 1 month. Version 0.98f
! 692:
! 693: 2006-03-15 Brouard Nicolas <brouard@localhost>
! 694:
! 695: * imach.c (Module): Bug if status = -2, the loglikelihood was
! 696: computed as likelihood omitting the logarithm. Version O.98e
! 697:
! 698: 2006-03-14 Brouard Nicolas <brouard@localhost>
! 699:
! 700: * imach.c (Module): varevsij Comments added explaining the second
! 701: table of variances if popbased=1 .
! 702: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
! 703: (Module): Function pstamp added
! 704: (Module): Version 0.98d
! 705:
! 706: 2006-03-06 Brouard Nicolas <brouard@localhost>
! 707:
! 708: * imach.c (Module): Variance-covariance wrong links and
! 709: varian-covariance of ej. is needed (Saito).
! 710:
! 711: 2006-02-27 Brouard Nicolas <brouard@localhost>
! 712:
! 713: * imach.c (Module): One freematrix added in mlikeli!
! 714:
! 715: 2006-02-26 Brouard Nicolas <brouard@localhost>
! 716:
! 717: * imach.c (Module): Some improvements in processing parameter
! 718: filename with strsep.
! 719:
! 720: 2006-02-24 Brouard Nicolas <brouard@localhost>
! 721:
! 722: * imach.c (Module): Memory leaks checks with valgrind and:
! 723: datafile was not closed, some imatrix were not freed and on matrix
! 724: allocation too.
! 725:
! 726: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
! 727:
! 728: * strsep.c (Module): Inclusion because not in mingw32!!!
! 729:
! 730: * setup.iss.in (Module): IMACHSETUPVERSION added
! 731:
! 732: * noreg-setup.iss (Module): added to cvs tree
! 733:
! 734: * Makefile (Module): IMACHSETUPVERSION added
! 735:
! 736: 2006-01-30 BROUARD Nicolas <brouard@localhost>
! 737:
! 738: * Makefile (Module, Module): Latest Makefile
! 739:
! 740: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
! 741:
! 742: 2006-01-27 BROUARD Nicolas <brouard@localhost>
! 743:
! 744: * noreg-setup.iss (Module): ADDED
! 745:
! 746: 2006-01-24 BROUARD Nicolas <brouard@localhost>
! 747:
! 748: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
! 749:
! 750: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
! 751:
! 752: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
! 753:
! 754: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
! 755:
! 756: 2005-09-30 <lievre@PC_00595>
! 757:
! 758: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
! 759: (Module): If the status is missing at the last wave but we know
! 760: that the person is alive, then we can code his/her status as -2
! 761: (instead of missing=-1 in earlier versions) and his/her
! 762: contributions to the likelihood is 1 - Prob of dying from last
! 763: health status (= 1-p13= p11+p12 in the easiest case of somebody in
! 764: the healthy state at last known wave). Version is 0.98
! 765:
! 766: 2004-05-20 Brouard Nicolas <brouard@localhost>
! 767:
! 768: * imach.c (Repository):
! 769: Agnes added a direct estimation of mortality (without the need of
! 770: computing period prevalence and differential mortality). Thus here
! 771: is version 0.97a which has been distributed to some people at
! 772: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
! 773: mortality using covariates is not done today. Estimating direct
! 774: mortality is a very different process because it doesn't need
! 775: interpolation because it is easy to get the lx from the force of
! 776: the mortality mux in the simplest case as for a Gompertz (log mux
! 777: = a + b*x . But we have been able to incorporate the new code
! 778: within former imach program (0.96d) without deteriorating too much
! 779: the understanding of the program.
! 780:
! 781: 2003-06-25 <brouard@BROUARD>
! 782:
! 783: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
! 784: exist so I changed back to asctime which exists.
! 785: (Module): Version 0.96b
! 786:
! 787: 2003-06-24 <brouard@BROUARD>
! 788:
! 789: * imach.c (Module): Some bugs corrected for windows. Also, when
! 790: mle=-1 a template is output in file "or"mypar.txt with the design
! 791: of the covariance matrix to be input.
! 792:
! 793: 2003-06-25 Brouard Nicolas <brouard@homebrou>
! 794:
! 795: * imach.c (Repository): Duplicated warning errors corrected.
! 796: (Repository): Elapsed time after each iteration is now output. It
! 797: helps to forecast when convergence will be reached. Elapsed time
! 798: is stamped in powell. We created a new html file for the graphs
! 799: concerning matrix of covariance. It has extension -cov.htm.
! 800:
! 801: 2003-06-23 Brouard Nicolas <brouard@homebrou>
! 802:
! 803: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
! 804:
! 805: 2003-06-18 Brouard Nicolas <brouard@homebrou>
! 806:
! 807: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
! 808:
! 809: 2003-06-17 Brouard Nicolas <brouard@homebrou>
! 810:
! 811:
! 812: * imach.c (Repository): Check when date of death was earlier that
! 813: current date of interview. It may happen when the death was just
! 814: prior to the death. In this case, dh was negative and likelihood
! 815: was wrong (infinity). We still send an "Error" but patch by
! 816: assuming that the date of death was just one stepm after the
! 817: interview.
! 818: (Repository): Because some people have very long ID (first column)
! 819: we changed int to long in num[] and we added a new lvector for
! 820: memory allocation. But we also truncated to 8 characters (left
! 821: truncation)
! 822:
! 823: (Repository): No more line truncation errors.
! 824:
! 825: 2003-06-14 Brouard Nicolas <brouard@homebrou>
! 826:
! 827: * imach.c (Repository): Add of a routine likelione (likelihood
! 828: only once) which prints on a text file
! 829: (ilk) the contributions to the likelihood for each
! 830: individual/wave.
! 831:
! 832: 2003-06-13 Brouard Nicolas <brouard@homebrou>
! 833: * imach.c (Repository): Replace "freqsummary" at a correct
! 834: place. It differs from routine "prevalence" which may be called
! 835: many times. Probs is memory consuming and must be used with
! 836: parcimony.
! 837:
! 838: 2003-06-17 <brouard@BROUARD>
! 839:
! 840: * timeval.h (Module): Added included file to make use of
! 841: gettimeofday working on win32 with cygwin.
! 842:
! 843: 2003-05-16 Brouard Nicolas <brouard@brouard>
! 844: * imach.c (Module): Insert of a warning if the delay between two
! 845: waves is negative.
! 846:
! 847: * imach.c (Module):
! 848:
! 849: 2003-05-03 <brouard@BROUARD>
! 850:
! 851: * imach.c: Some cleaning
! 852:
! 853: 2003-03-28 <brouard@BROUARD>
! 854: * imach.c (Module): In version up to 0.92 likelihood was computed
! 855: as if date of death was unknown. Death was treated as any other
! 856: health state: the date of the interview describes the actual state
! 857: and not the date of a change in health state. The former idea was
! 858: to consider that at each interview the state was recorded
! 859: (healthy, disable or death) and IMaCh was corrected; but when we
! 860: introduced the exact date of death then we should have modified
! 861: the contribution of an exact death to the likelihood. This new
! 862: contribution is smaller and very dependent of the step unit
! 863: stepm. It is no more the probability to die between last interview
! 864: and month of death but the probability to survive from last
! 865: interview up to one month before death multiplied by the
! 866: probability to die within a month. Thanks to Chris
! 867: Jackson for correcting this bug. Former versions increased
! 868: mortality artificially. The bad side is that we add another loop
! 869: which slows down the processing. The difference can be up to 10%
! 870: lower mortality.
! 871:
! 872: 2002-05-30 <brouard@BROUARD>
! 873:
! 874: * imach.c (Module): Add correlation matrix of one-step
! 875: probabilities and covariance matrix
1.54 brouard 876:
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