Annotation of imach/src/ChangeLog, revision 1.66
1.66 ! brouard 1: 2023-05-08 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * (Module): Error V0 when result:. and model 1+age+V1: fixed
! 4:
1.63 brouard 5: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
6:
7: * imach.c (Module): Inverting the model equation and fixingg bugs
8: in the drawings
9: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
10:
11: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
12:
13: * imach.c (Module): some bugs in printinggnuplot
14:
1.62 brouard 15: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
16:
17: * imach.c (Module): Version 0.99r42 needed a newer version of
18: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
19: version 5.0 or 5.1 distributed with IMaCh.
20:
1.61 brouard 21: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
22:
23: * imach.c (Module): Fixing when a state in the data is 0 or higher
24: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
25:
1.63 brouard 26: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
27:
28: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
29:
30: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
31:
32: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
33:
1.61 brouard 34: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
35:
36: * imach.c (Module): Version 0.99r39 with colored dummy covariates
37: (fixed or time varying), using new last columns of
38: ILK_parameter.txt file.
39:
1.60 brouard 40: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
41:
42: * imach.c (Module): Adding timevarying products of any kinds,
43: should work before shifting cotvar from ncovcol+nqv columns in
44: order to have a correspondance between the column of cotvar and
45: the id of column.
1.61 brouard 46: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 47:
48: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
49:
50: * imach.c (Module): Many improvements for fixing products of fixed
51: timevarying as well as fixed * fixed, and test with quantitative
52: covariate.
53:
1.59 brouard 54: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
55:
56: * imach.c (Module): Now the easy runs i.e. without result or
57: model=1+age only did not work. The defautl combination should be 1
58: and not 0 because everything hasn't been tranformed yet.
59:
60: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
61:
62: * imach.c: Version 0.99r35 because it outputs same results with
63: 1+age+V1+V1*age for females and 1+age for females only
64: (education=1 noweight)
65:
1.58 brouard 66: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
67:
68: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
69:
1.56 brouard 70: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
71:
72: * imach.c (Module): Version 0.99r33 A lot of changes in
73: reassigning covariates: my first idea was that people will always
74: use the first covariate V1 into the model but in fact they are
75: producing data with many covariates and can use an equation model
76: with some of the covariate; it means that in a model V2+V3 instead
77: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
78: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
79: the equation model is restricted to two variables only (V2, V3)
80: and the combination for V2 should be codtabm(k,1) instead of
81: (codtabm(k,2), and the code should be
82: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
83: made. All of these should be simplified once a day like we did in
84: hpxij() for example by using precov[nres] which is computed in
85: decoderesult for each nres of each resultline. Loop should be done
86: on the equation model globally by distinguishing only product with
87: age (which are changing with age) and no more on type of
88: covariates, single dummies, single covariates.
89:
90: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
91:
92: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
93:
94: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
95:
96: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
97:
1.55 brouard 98: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
99:
100: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
101: coredumped, revealed by Feiuno, thank you.
1.57 brouard 102:
103: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
104:
105: * r29 W and not sqrt(Wald)
106:
107: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
108:
109: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
110:
1.55 brouard 111: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
112:
113: * imach.c (Module): Adding the Wald tests from the log to the main
1.65 brouard 114: htm for better display of the maximum likelihood estimators.
1.57 brouard 115:
1.65 brouard 116: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
117:
118: * imach.c: With products of covariates (age or dummies or
119: quantitatives), estimates of parameters were good but when
120: estimating variances the positions of newly created covariates
121: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
122:
123: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
124:
125: * imach.c (Module): Some attempts to find a bug of wrong estimates
126: of confidencce intervals with product in the equation modelC
127:
128: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
129:
130: * imach.c (Module): Some minor improvements
131:
132: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
133:
134: * imach.c (Module): Adding link to text data files
135:
136: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
137:
138: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
139:
140: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
141:
142: * imach.c (Module): Fixed covariates (dummy or quantitative)
143: with missing values have never been allowed but are ERRORS and
144: program quits. Standard deviations of fixed covariates were
145: wrongly computed. Mean and standard deviations of time varying
146: covariates are still not computed.
147:
148: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
149:
150: * 99r25 Improvements in fixing discrepancies between covariates
151: missing in result line but in model.
152:
153: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
154: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
155:
156: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
157:
158: * ./ (Module): Fixed bug on result:
159:
160: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
161:
162: * imach.c (Module): Fix bug on quitting after result lines!
163: (Module): Version 0.99r21
164:
165: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
166:
167: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
168:
169:
170: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
171:
172: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
173:
174: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
175:
176: * (Module): imach.c Update mle=-3 (for computing Life expectancy
177: and life table from the data without any state)
178:
179: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
180:
181: * version.h: Summary: version 0.99.r19
182:
183: * imach.c: Summary: Projection syntax simplified
184: We can now start projections, forward or backward, from the mean date
185: of inteviews up to or down to a number of years of projection:
186: prevforecast=1 yearsfproj=15.3 mobil_average=0
187: or
188: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
189: or
190: prevbackcast=1 yearsbproj=12.3 mobil_average=1
191: or
192: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
193:
194: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
195:
196: * imach.c: Summary: doxygen tex bug
197:
198: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
199:
200: * imach.c: Summary: There was some wrong lines added
201:
202: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
203:
204: * Makefile, imach.c: *** empty log message ***
205:
206: * ChangeLog: Summary: C=
207:
208: * imach.c: Summary: Some updates
209:
210: * imach.c: Summary: Before ncovmax
211:
212: * version.h: *** empty log message ***
213:
214: * imach.c: Summary: 0.99r18 unlimited number of individuals
215: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
216:
217: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
218:
219: * imach.c: Summary: Bug for young ages (<-30) will be in r17
220:
221: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
222:
223: * Makefile: Summary: 0.99r16
224:
225: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
226:
227: * imach.c: Summary: Some bugs fixed
228:
229: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
230:
231: * imach.c: Summary: Bug for young ages (<-30) will be in r17
232:
233: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
234:
235: * imach.c: Summary: Some bugs fixed
236:
237: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
238:
239: * imach.c:
240: Summary: Bug fixed by providing frequencies only for non missing covariates
241:
242: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
243:
244: * imach.c: Summary: some minor bugs
245:
246: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
247:
248: * README.txt: *** empty log message ***
249:
250: * imach.c: Summary: Some bugs fixed, valgrind tested
251:
252: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
253:
254: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
255:
256: * imach.c:
257: Summary: Computing mean and stdeviation of fixed quantitative variables
258:
259: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
260:
261: * imach.c: Summary: Some minor bugs fixed
262:
263: * version.h: *** empty log message ***
264:
265: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
266:
267: * imach.c: *** empty log message ***
268:
269: * imach.c: Summary: Adding second argument for quitting
270:
271: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
272:
273: * Makefile, README.txt, imach.c: Summary: 0.99r15
274: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
275:
276: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
277:
278: * imach.c: Summary: temporary working
279:
280: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
281:
282: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
283:
284: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
285:
286: * imach.c: Summary: BOM files can be read now
287:
288: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
289:
290: * imach.c: Summary: Graphs improvements
291:
292: * imach.c: Summary: Saito's color
293:
294: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
295:
296: * imach.c: Summary: Version 0.99r14
297:
298: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
299:
300: * imach.c: Summary: More documentation on projections
301:
302: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
303:
304: * imach.c: Summary: Some bug with rint
305:
306: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
307:
308: * imach.c: *** empty log message ***
309:
310: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
311:
312: * imach.c: Summary: Code into subroutine, cleanings
313:
314: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
315:
316: * imach.c:
317: Summary: backprojection and confidence intervals of backprevalence
318:
319: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
320:
321: * imach.c: Summary: temporary save for backprojection
322:
323: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
324:
325: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
326:
327: * imach.c: Summary: imach 0.99r13 Some bugs fixed
328:
329: * imach.c: Summary: Labels in graphs
330:
331: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
332:
333: * imach.c: Summary: to save
334:
335: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
336:
337: * imach.c: *** empty log message ***
338:
339: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
340:
341: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
342:
343: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
344:
345: * imach.c: Summary: Gnuplot indexations fixed (humm)
346:
347: * imach.c:
348: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
349:
350: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
351:
352: * imach.c: Summary: Version 0.99r12
353: Some cleanings, conformed with updated documentation.
354:
355: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
356:
357: * version.h: *** empty log message ***
358:
359: * version.h: Summary:0.99r11
360:
361: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
362:
363: * imach.c: Summary: Temp
364:
365: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
366:
367: * imach.c: Summary: Temporary
368:
369: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
370:
371: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
372:
373: * imach.c: Summary: Fixing data parameter line
374:
375: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
376:
377: * imach.c: Summary: 0.99 in progress
378:
379: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
380:
381: * imach.c: *** empty log message ***
382:
383: * imach.c: Summary: not working
384:
385: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
386:
387: * imach.c: Summary: continue
388:
389: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
390:
391: * imach.c: Summary: Starting values from frequencies
392:
393: * imach.c: *** empty log message ***
394:
395: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
396:
397: * imach.c: *** empty log message ***
398:
399: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
400:
401: * imach.c: Summary: Fixing a lots
402:
403: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
404:
405: * imach.c: Summary: gnuplot problem in Back projection to fix
406:
407: * imach.c: Summary: Better
408:
409: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
410:
411: * imach.c:
412: Summary: Improvement in Powell output in order to copy and paste
413:
414: * imach.c: Summary: Starting tests of 0.99
415:
416: * imach.c: Summary: to valgrind
417:
418: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
419:
420: * imach.c: *** empty log message ***
421:
422: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
423:
424: * imach.c: *** empty log message ***
425:
426: * imach.c: Summary: not working
427:
428: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
429:
430: * imach.c: Summary: not working
431:
432: * imach.c: Summary: Not working
433:
434: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
435:
436: * imach.c: Summary: Completing for func too
437:
438: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
439:
440: * imach.c: Summary: Fixing some arrays, still debugging
441:
442: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
443:
444: * imach.c:
445: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
446:
447: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
448:
449: * imach.c: Summary: temp
450:
451: * imach.c: Summary: saving but not running
452:
453: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
454:
455: * imach.c: Summary: Fixes
456:
457: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
458:
459: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
460:
461: * setup.iss, Makefile, version.h: *** empty log message ***
462:
463: * imach.c: Summary: temporary
464:
465: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
466:
467: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
468:
469: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
470:
471: * imach.c: Summary: minor bug
472:
473: * imach.c: Summary: 0.99r2
474:
475: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
476:
477: * imach.c: *** empty log message ***
478:
479: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
480:
481: * imach.c: Summary: 0.99 Back projections
482:
483: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
484:
485: * imach.c: Summary: Experimental backcast
486:
487: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
488:
489: * imach.c: Summary: 0.98r4 Warning and status=-2
490:
491: Version 0.98r4 is now:
492: - displaying an error when status is -1, date of interview unknown and date of death known;
493: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
494: Older changes concerning s=-2, dating from 2005 have been supersed.
495:
496: * Makefile: *** empty log message ***
497:
498: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
499:
500: * Makefile: *** empty log message ***
501:
502: * imach.c: Summary: 0.98r4 working
503:
504: * Makefile: Summary: linuxrpm added
505:
506: * Makefile: *** empty log message ***
507:
508: * imach.c: Summary: temporary not working
509:
510: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
511:
512: * imach.c: Summary: 0.98r4
513:
514: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
515:
516: * Makefile: *** empty log message ***
517:
518: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
519:
520: * Makefile:
521: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
522:
523: * imach.c: Summary: minor typo
524:
525: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
526:
527: Author: Nicolas Brouard
528:
529: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
530:
531: * imach.c: Summary: Start working on projected prevalences
532:
533: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
534:
535: * imach.c: Summary: Adding ftolpl parameter
536: Author: N Brouard
537:
538: We had difficulties to get smoothed confidence intervals. It was due
539: to the period prevalence which wasn't computed accurately. The inner
540: parameter ftolpl is now an outer parameter of the .imach parameter
541: file after estepm. If ftolpl is small 1.e-4 and estepm too,
542: computation are long.
543:
544: * version.h: *** empty log message ***
545:
546: * imach.c: Summary: temporary
547:
548: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
549:
550: * Makefile: *** empty log message ***
551:
552: * setup.iss.in: Summary: some new subdirs
553:
554: * imach.c: *** empty log message ***
555:
556: * setup.iss.in:
557: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
558:
559: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
560:
561: * imach.c: *** empty log message ***
562:
563: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
564:
565: * imach.c:
566: Summary: 0.98r3 some clarification for graphs on likelihood contributions
567:
568: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
569:
570: * imach.c: Summary: Some new graphs of contribution to likelihood
571:
572: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
573:
574: * Makefile:
575: Summary: Version read from version.h, itself read with cmake
576:
577: * imach.c: Summary: looking at better estimation of the hessian
578:
579: Also a better criteria for convergence to the period prevalence And
580: therefore adding the number of years needed to converge. (The
581: prevalence in any alive state shold sum to one
582:
583: * Makefile: *** empty log message ***
584:
585: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
586:
587: * imach.c:
588: Summary: Adding some overall graph on contribution to likelihood. Might change
589:
590: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
591:
592: * Makefile: *** empty log message ***
593:
594: * imach.c: Summary: 0.98r0
595:
596: - Some new graphs like survival functions
597: - Some bugs fixed like model=1+age+V2.
598:
599: * ChangeLog, Makefile: Summary: 0.98r0
600:
601: * CMakeLists.txt: Summary: Some tests for setup.iss
602:
603: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
604:
605: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
606:
607: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
608:
609: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
610:
611: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
612:
613: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
614:
615: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
616:
617: * imach.c (Module): Merging 1.61 to 1.162
618:
619: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
620:
621: * prevlim.h (Module):
622:
623: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
624:
625: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
626: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
627:
628: 2010-04-29 brouard <brouard@ined.fr>
629:
630: * imach.c (Module): Checking covariates for more complex models
631: than V1+V2. A lot of change to be done. Unstable.
632:
633: 2010-04-26 brouard <brouard@ined.fr>
634:
635: * imach.c (Module): merging some libgsl code. Fixing computation
636: of likelione (using inter/intrapolation if mle = 0) in order to
637: get same likelihood as if mle=1.
638: Some cleaning of code and comments added.
639:
640: 2009-10-29 brouard <brouard@ined.fr>
641:
642: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
643:
644: 2006-06-30 Brouard Nicolas <brouard@localhost>
645:
646: * imach.c (Module): Clarifications on computing e.j
647:
648: 2006-04-28 Brouard Nicolas <brouard@localhost>
649:
650: * imach.c (Module): Yes the sum of survivors was wrong since
651: imach-114 because nhstepm was no more computed in the age
652: loop. Now we define nhstepma in the age loop.
653: (Module): In order to speed up (in case of numerous covariates) we
654: compute health expectancies (without variances) in a first step
655: and then all the health expectancies with variances or standard
656: deviation (needs data from the Hessian matrices) which slows the
657: computation.
658: In the future we should be able to stop the program is only health
659: expectancies and graph are needed without standard deviations.
660:
661: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
662:
663: * imach.iss (Module):
664:
665: * imach.c (Module): bugs in evsi + population file added in htm output file
666:
667: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
668:
669: * imach.c (Module):
670:
671: 2006-03-20 Brouard Nicolas <brouard@localhost>
672:
673: * imach.c (Module): <title> changed, corresponds to .htm file
674: name. <head> headers where missing.
675:
676: * Makefile (Module): 0.98g
677:
678: * imach.c (Module): Weights can have a decimal point as for
679: English (a comma might work with a correct LC_NUMERIC environment,
680: otherwise the weight is truncated).
681: Modification of warning when the covariates values are not 0 or
682: 1.
683: Version 0.98g
684:
685: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
686:
687: * imach.c (Module): Comments concerning covariates added
688:
689: * noreg-setup.iss (Module): Version 0.98f
690:
691: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
692:
693: * imach.c (Module): refinements in the computation of lli if
694: status=-2 in order to have more reliable computation if stepm is
695: not 1 month. Version 0.98f
696:
697: 2006-03-15 Brouard Nicolas <brouard@localhost>
698:
699: * imach.c (Module): Bug if status = -2, the loglikelihood was
700: computed as likelihood omitting the logarithm. Version O.98e
701:
702: 2006-03-14 Brouard Nicolas <brouard@localhost>
703:
704: * imach.c (Module): varevsij Comments added explaining the second
705: table of variances if popbased=1 .
706: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
707: (Module): Function pstamp added
708: (Module): Version 0.98d
709:
710: 2006-03-06 Brouard Nicolas <brouard@localhost>
711:
712: * imach.c (Module): Variance-covariance wrong links and
713: varian-covariance of ej. is needed (Saito).
714:
715: 2006-02-27 Brouard Nicolas <brouard@localhost>
716:
717: * imach.c (Module): One freematrix added in mlikeli!
718:
719: 2006-02-26 Brouard Nicolas <brouard@localhost>
720:
721: * imach.c (Module): Some improvements in processing parameter
722: filename with strsep.
723:
724: 2006-02-24 Brouard Nicolas <brouard@localhost>
725:
726: * imach.c (Module): Memory leaks checks with valgrind and:
727: datafile was not closed, some imatrix were not freed and on matrix
728: allocation too.
729:
730: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
731:
732: * strsep.c (Module): Inclusion because not in mingw32!!!
733:
734: * setup.iss.in (Module): IMACHSETUPVERSION added
735:
736: * noreg-setup.iss (Module): added to cvs tree
737:
738: * Makefile (Module): IMACHSETUPVERSION added
739:
740: 2006-01-30 BROUARD Nicolas <brouard@localhost>
741:
742: * Makefile (Module, Module): Latest Makefile
743:
744: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
745:
746: 2006-01-27 BROUARD Nicolas <brouard@localhost>
747:
748: * noreg-setup.iss (Module): ADDED
749:
750: 2006-01-24 BROUARD Nicolas <brouard@localhost>
751:
752: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
753:
754: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
755:
756: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
757:
758: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
759:
760: 2005-09-30 <lievre@PC_00595>
761:
762: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
763: (Module): If the status is missing at the last wave but we know
764: that the person is alive, then we can code his/her status as -2
765: (instead of missing=-1 in earlier versions) and his/her
766: contributions to the likelihood is 1 - Prob of dying from last
767: health status (= 1-p13= p11+p12 in the easiest case of somebody in
768: the healthy state at last known wave). Version is 0.98
769:
770: 2004-05-20 Brouard Nicolas <brouard@localhost>
771:
772: * imach.c (Repository):
773: Agnes added a direct estimation of mortality (without the need of
774: computing period prevalence and differential mortality). Thus here
775: is version 0.97a which has been distributed to some people at
776: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
777: mortality using covariates is not done today. Estimating direct
778: mortality is a very different process because it doesn't need
779: interpolation because it is easy to get the lx from the force of
780: the mortality mux in the simplest case as for a Gompertz (log mux
781: = a + b*x . But we have been able to incorporate the new code
782: within former imach program (0.96d) without deteriorating too much
783: the understanding of the program.
784:
785: 2003-06-25 <brouard@BROUARD>
786:
787: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
788: exist so I changed back to asctime which exists.
789: (Module): Version 0.96b
790:
791: 2003-06-24 <brouard@BROUARD>
792:
793: * imach.c (Module): Some bugs corrected for windows. Also, when
794: mle=-1 a template is output in file "or"mypar.txt with the design
795: of the covariance matrix to be input.
796:
797: 2003-06-25 Brouard Nicolas <brouard@homebrou>
798:
799: * imach.c (Repository): Duplicated warning errors corrected.
800: (Repository): Elapsed time after each iteration is now output. It
801: helps to forecast when convergence will be reached. Elapsed time
802: is stamped in powell. We created a new html file for the graphs
803: concerning matrix of covariance. It has extension -cov.htm.
804:
805: 2003-06-23 Brouard Nicolas <brouard@homebrou>
806:
807: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
808:
809: 2003-06-18 Brouard Nicolas <brouard@homebrou>
810:
811: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
812:
813: 2003-06-17 Brouard Nicolas <brouard@homebrou>
814:
815:
816: * imach.c (Repository): Check when date of death was earlier that
817: current date of interview. It may happen when the death was just
818: prior to the death. In this case, dh was negative and likelihood
819: was wrong (infinity). We still send an "Error" but patch by
820: assuming that the date of death was just one stepm after the
821: interview.
822: (Repository): Because some people have very long ID (first column)
823: we changed int to long in num[] and we added a new lvector for
824: memory allocation. But we also truncated to 8 characters (left
825: truncation)
826:
827: (Repository): No more line truncation errors.
828:
829: 2003-06-14 Brouard Nicolas <brouard@homebrou>
830:
831: * imach.c (Repository): Add of a routine likelione (likelihood
832: only once) which prints on a text file
833: (ilk) the contributions to the likelihood for each
834: individual/wave.
835:
836: 2003-06-13 Brouard Nicolas <brouard@homebrou>
837: * imach.c (Repository): Replace "freqsummary" at a correct
838: place. It differs from routine "prevalence" which may be called
839: many times. Probs is memory consuming and must be used with
840: parcimony.
841:
842: 2003-06-17 <brouard@BROUARD>
843:
844: * timeval.h (Module): Added included file to make use of
845: gettimeofday working on win32 with cygwin.
846:
847: 2003-05-16 Brouard Nicolas <brouard@brouard>
848: * imach.c (Module): Insert of a warning if the delay between two
849: waves is negative.
850:
851: * imach.c (Module):
852:
853: 2003-05-03 <brouard@BROUARD>
854:
855: * imach.c: Some cleaning
856:
857: 2003-03-28 <brouard@BROUARD>
858: * imach.c (Module): In version up to 0.92 likelihood was computed
859: as if date of death was unknown. Death was treated as any other
860: health state: the date of the interview describes the actual state
861: and not the date of a change in health state. The former idea was
862: to consider that at each interview the state was recorded
863: (healthy, disable or death) and IMaCh was corrected; but when we
864: introduced the exact date of death then we should have modified
865: the contribution of an exact death to the likelihood. This new
866: contribution is smaller and very dependent of the step unit
867: stepm. It is no more the probability to die between last interview
868: and month of death but the probability to survive from last
869: interview up to one month before death multiplied by the
870: probability to die within a month. Thanks to Chris
871: Jackson for correcting this bug. Former versions increased
872: mortality artificially. The bad side is that we add another loop
873: which slows down the processing. The difference can be up to 10%
874: lower mortality.
875:
876: 2002-05-30 <brouard@BROUARD>
877:
878: * imach.c (Module): Add correlation matrix of one-step
879: probabilities and covariance matrix
1.54 brouard 880:
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