Annotation of imach/src/ChangeLog, revision 1.67
1.67 ! brouard 1: 2023-05-23 Nicolas Brouard <brouard@ined.fr>
! 2:
! 3: * imach.c (Module): Fixed PROB_r
! 4:
! 5: 2023-05-22 Nicolas Brouard <brouard@ined.fr>
! 6:
! 7: * imach.c (Module): In the ILK....txt file, the number of columns
! 8: before the covariates values is dependent of the number of states (16+nlstate): 0.99r46
! 9:
1.66 brouard 10: 2023-05-08 Nicolas Brouard <brouard@ined.fr>
11:
12: * (Module): Error V0 when result:. and model 1+age+V1: fixed
13:
1.63 brouard 14: 2023-04-29 Nicolas Brouard <brouard@ined.fr>
15:
16: * imach.c (Module): Inverting the model equation and fixingg bugs
17: in the drawings
18: "1+age+V7*V4*age+V6*V4*age+V7*V3*age+V6*V3*age+V6*V2*age+V7*age+V6*age+V4*age+V3*age+V2*age+V7*V4+V6*V4+V7*V3+V6*V3+V7*V2+V6*V2+V7+V6+V4+V3+V2\000\0003+V2"
19:
20: 2023-04-24 Nicolas Brouard <brouard@ined.fr>
21:
22: * imach.c (Module): some bugs in printinggnuplot
23:
1.62 brouard 24: 2022-09-19 Nicolas Brouard <brouard@ined.fr>
25:
26: * imach.c (Module): Version 0.99r42 needed a newer version of
27: Gnuplot. But newer version 0.99r43 should run with the Gnuplot
28: version 5.0 or 5.1 distributed with IMaCh.
29:
1.61 brouard 30: 2022-09-18 Nicolas Brouard <brouard@ined.fr>
31:
32: * imach.c (Module): Fixing when a state in the data is 0 or higher
33: than lstate+ndeath. Fixing the plot of contribution to Likelihood.
34:
1.63 brouard 35: 2022-09-16 Nicolas Brouard <brouard@ined.fr>
36:
37: * imach.c (Module): 0.99r41 Was an error when product of timevarying and fixed. Using FixedV[of name] now. Thank you Feinuo
38:
39: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
40:
41: * imach.c (Module): Fixing names of variables in T_ (thanks to Feinuo)
42:
1.61 brouard 43: 2022-09-14 Nicolas Brouard <brouard@ined.fr>
44:
45: * imach.c (Module): Version 0.99r39 with colored dummy covariates
46: (fixed or time varying), using new last columns of
47: ILK_parameter.txt file.
48:
1.60 brouard 49: 2022-09-11 Nicolas Brouard <brouard@ined.fr>
50:
51: * imach.c (Module): Adding timevarying products of any kinds,
52: should work before shifting cotvar from ncovcol+nqv columns in
53: order to have a correspondance between the column of cotvar and
54: the id of column.
1.61 brouard 55: (Module): Some cleaning and adding covariates in ILK.txt
1.60 brouard 56:
57: 2022-09-09 Nicolas Brouard <brouard@ined.fr>
58:
59: * imach.c (Module): Many improvements for fixing products of fixed
60: timevarying as well as fixed * fixed, and test with quantitative
61: covariate.
62:
1.59 brouard 63: 2022-09-04 Nicolas Brouard <brouard@ined.fr>
64:
65: * imach.c (Module): Now the easy runs i.e. without result or
66: model=1+age only did not work. The defautl combination should be 1
67: and not 0 because everything hasn't been tranformed yet.
68:
69: 2022-09-02 Nicolas Brouard <brouard@ined.fr>
70:
71: * imach.c: Version 0.99r35 because it outputs same results with
72: 1+age+V1+V1*age for females and 1+age for females only
73: (education=1 noweight)
74:
1.58 brouard 75: 2022-08-31 Nicolas Brouard <brouard@ined.fr>
76:
77: * imach.c (Module): Some improvments in fichtm and many verifications 0.99r34
78:
1.56 brouard 79: 2022-08-21 Nicolas Brouard <brouard@ined.fr>
80:
81: * imach.c (Module): Version 0.99r33 A lot of changes in
82: reassigning covariates: my first idea was that people will always
83: use the first covariate V1 into the model but in fact they are
84: producing data with many covariates and can use an equation model
85: with some of the covariate; it means that in a model V2+V3 instead
86: of codtabm(k,Tvaraff[j]) which calculates for combination k, for
87: three covariates (V1, V2, V3) the value of Tvaraff[j], but in fact
88: the equation model is restricted to two variables only (V2, V3)
89: and the combination for V2 should be codtabm(k,1) instead of
90: (codtabm(k,2), and the code should be
91: codtabm(k,TnsdVar[Tvaraff[j]]. Many many changes have been
92: made. All of these should be simplified once a day like we did in
93: hpxij() for example by using precov[nres] which is computed in
94: decoderesult for each nres of each resultline. Loop should be done
95: on the equation model globally by distinguishing only product with
96: age (which are changing with age) and no more on type of
97: covariates, single dummies, single covariates.
98:
99: 2022-08-06 Nicolas Brouard <brouard@ined.fr>
100:
101: * imach.c (Module): Version of imach using partly decoderesult to rebuild xpxij function
102:
103: 2022-08-03 Nicolas Brouard <brouard@ined.fr>
104:
105: * imach.c (Module): Many errors in graphs fixed with Vn*age covariates.
106:
1.55 brouard 107: 2022-07-25 Brouard Nicolas <brouard@brouard.name>
108:
109: * imach.c (Module): Error cptcovn instead of nsd in bmij (was
110: coredumped, revealed by Feiuno, thank you.
1.57 brouard 111:
112: 2022-07-23 Nicolas Brouard <brouard@ined.fr>
113:
114: * r29 W and not sqrt(Wald)
115:
116: 2022-07-22 Nicolas Brouard <brouard@ined.fr>
117:
118: * imach.c (Module): Output of Wald test in the htm file and not only in the log.
119:
1.55 brouard 120: 2022-06-02 Brouard Nicolas <brouard@brouard.name>
121:
122: * imach.c (Module): Adding the Wald tests from the log to the main
1.65 brouard 123: htm for better display of the maximum likelihood estimators.
1.57 brouard 124:
1.65 brouard 125: 2022-05-30 Brouard Nicolas <brouard@brouard.name>
126:
127: * imach.c: With products of covariates (age or dummies or
128: quantitatives), estimates of parameters were good but when
129: estimating variances the positions of newly created covariates
130: were wrongly assigned and results were wrong. Thank to Feinua_Sun!
131:
132: 2022-05-24 Nicolas Brouard <brouard@ined.fr>
133:
134: * imach.c (Module): Some attempts to find a bug of wrong estimates
135: of confidencce intervals with product in the equation modelC
136:
137: 2022-05-15 Nicolas Brouard <brouard@ined.fr>
138:
139: * imach.c (Module): Some minor improvements
140:
141: 2022-04-13 Brouard Nicolas <brouard@brouard.name>
142:
143: * imach.c (Module): Adding link to text data files
144:
145: 2022-04-11 Nicolas Brouard <brouard@ined.fr>
146:
147: * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
148:
149: 2022-04-05 Brouard Nicolas <brouard@ined.fr>
150:
151: * imach.c (Module): Fixed covariates (dummy or quantitative)
152: with missing values have never been allowed but are ERRORS and
153: program quits. Standard deviations of fixed covariates were
154: wrongly computed. Mean and standard deviations of time varying
155: covariates are still not computed.
156:
157: 2022-03-17 Brouard Nicolas <brouard@ined.fr>
158:
159: * 99r25 Improvements in fixing discrepancies between covariates
160: missing in result line but in model.
161:
162: *Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
163: * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
164:
165: *2021-03-08 Nicolas Brouard <brouard@ined.fr>
166:
167: * ./ (Module): Fixed bug on result:
168:
169: *2021-02-20 Nicolas Brouard <brouard@ined.fr>
170:
171: * imach.c (Module): Fix bug on quitting after result lines!
172: (Module): Version 0.99r21
173:
174: 2021-02-12 Nicolas Brouard <brouard@ined.fr>
175:
176: * imach.c (Module): The use of a Windows BOM (huge) file is now an error
177:
178:
179: 2021-02-11 Nicolas Brouard <brouard@ined.fr>
180:
181: * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
182:
183: 2020-02-22 Brouard Nicolas <brouard@ined.fr>
184:
185: * (Module): imach.c Update mle=-3 (for computing Life expectancy
186: and life table from the data without any state)
187:
188: 2019-05-20 Brouard Nicolas <brouard@ined.fr>
189:
190: * version.h: Summary: version 0.99.r19
191:
192: * imach.c: Summary: Projection syntax simplified
193: We can now start projections, forward or backward, from the mean date
194: of inteviews up to or down to a number of years of projection:
195: prevforecast=1 yearsfproj=15.3 mobil_average=0
196: or
197: prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
198: or
199: prevbackcast=1 yearsbproj=12.3 mobil_average=1
200: or
201: prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
202:
203: 2019-05-18 Brouard Nicolas <brouard@ined.fr>
204:
205: * imach.c: Summary: doxygen tex bug
206:
207: 2019-05-16 Brouard Nicolas <brouard@ined.fr>
208:
209: * imach.c: Summary: There was some wrong lines added
210:
211: 2019-05-09 Brouard Nicolas <brouard@ined.fr>
212:
213: * Makefile, imach.c: *** empty log message ***
214:
215: * ChangeLog: Summary: C=
216:
217: * imach.c: Summary: Some updates
218:
219: * imach.c: Summary: Before ncovmax
220:
221: * version.h: *** empty log message ***
222:
223: * imach.c: Summary: 0.99r18 unlimited number of individuals
224: The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
225:
226: 2018-12-13 Brouard Nicolas <brouard@ined.fr>
227:
228: * imach.c: Summary: Bug for young ages (<-30) will be in r17
229:
230: 2018-12-05 Brouard Nicolas <brouard@ined.fr>
231:
232: * Makefile: Summary: 0.99r16
233:
234: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
235:
236: * imach.c: Summary: Some bugs fixed
237:
238: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
239:
240: * imach.c: Summary: Bug for young ages (<-30) will be in r17
241:
242: 2018-05-02 Brouard Nicolas <brouard@ined.fr>
243:
244: * imach.c: Summary: Some bugs fixed
245:
246: 2018-05-01 Brouard Nicolas <brouard@ined.fr>
247:
248: * imach.c:
249: Summary: Bug fixed by providing frequencies only for non missing covariates
250:
251: 2018-04-27 Brouard Nicolas <brouard@ined.fr>
252:
253: * imach.c: Summary: some minor bugs
254:
255: 2018-04-21 Brouard Nicolas <brouard@ined.fr>
256:
257: * README.txt: *** empty log message ***
258:
259: * imach.c: Summary: Some bugs fixed, valgrind tested
260:
261: 2018-04-20 Brouard Nicolas <brouard@ined.fr>
262:
263: * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
264:
265: * imach.c:
266: Summary: Computing mean and stdeviation of fixed quantitative variables
267:
268: 2018-04-19 Brouard Nicolas <brouard@ined.fr>
269:
270: * imach.c: Summary: Some minor bugs fixed
271:
272: * version.h: *** empty log message ***
273:
274: 2018-02-27 Brouard Nicolas <brouard@ined.fr>
275:
276: * imach.c: *** empty log message ***
277:
278: * imach.c: Summary: Adding second argument for quitting
279:
280: 2018-02-21 Brouard Nicolas <brouard@ined.fr>
281:
282: * Makefile, README.txt, imach.c: Summary: 0.99r15
283: New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
284:
285: 2017-07-20 Brouard Nicolas <brouard@ined.fr>
286:
287: * imach.c: Summary: temporary working
288:
289: 2017-07-19 Brouard Nicolas <brouard@ined.fr>
290:
291: * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
292:
293: 2017-07-17 Brouard Nicolas <brouard@ined.fr>
294:
295: * imach.c: Summary: BOM files can be read now
296:
297: 2017-06-30 Brouard Nicolas <brouard@ined.fr>
298:
299: * imach.c: Summary: Graphs improvements
300:
301: * imach.c: Summary: Saito's color
302:
303: 2017-06-29 Brouard Nicolas <brouard@ined.fr>
304:
305: * imach.c: Summary: Version 0.99r14
306:
307: 2017-06-27 Brouard Nicolas <brouard@ined.fr>
308:
309: * imach.c: Summary: More documentation on projections
310:
311: * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
312:
313: * imach.c: Summary: Some bug with rint
314:
315: 2017-05-24 Brouard Nicolas <brouard@ined.fr>
316:
317: * imach.c: *** empty log message ***
318:
319: 2017-05-23 Brouard Nicolas <brouard@ined.fr>
320:
321: * imach.c: Summary: Code into subroutine, cleanings
322:
323: 2017-05-18 Brouard Nicolas <brouard@ined.fr>
324:
325: * imach.c:
326: Summary: backprojection and confidence intervals of backprevalence
327:
328: 2017-05-13 Brouard Nicolas <brouard@ined.fr>
329:
330: * imach.c: Summary: temporary save for backprojection
331:
332: * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
333:
334: 2017-04-26 Brouard Nicolas <brouard@ined.fr>
335:
336: * imach.c: Summary: imach 0.99r13 Some bugs fixed
337:
338: * imach.c: Summary: Labels in graphs
339:
340: 2017-04-24 Brouard Nicolas <brouard@ined.fr>
341:
342: * imach.c: Summary: to save
343:
344: 2017-04-18 Brouard Nicolas <brouard@ined.fr>
345:
346: * imach.c: *** empty log message ***
347:
348: 2017-04-05 Brouard Nicolas <brouard@ined.fr>
349:
350: * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
351:
352: 2017-04-04 Brouard Nicolas <brouard@ined.fr>
353:
354: * imach.c: Summary: Gnuplot indexations fixed (humm)
355:
356: * imach.c:
357: Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
358:
359: 2017-04-03 Brouard Nicolas <brouard@ined.fr>
360:
361: * imach.c: Summary: Version 0.99r12
362: Some cleanings, conformed with updated documentation.
363:
364: 2017-03-30 Brouard Nicolas <brouard@ined.fr>
365:
366: * version.h: *** empty log message ***
367:
368: * version.h: Summary:0.99r11
369:
370: 2017-03-29 Brouard Nicolas <brouard@ined.fr>
371:
372: * imach.c: Summary: Temp
373:
374: 2017-03-27 Brouard Nicolas <brouard@ined.fr>
375:
376: * imach.c: Summary: Temporary
377:
378: 2017-03-08 Brouard Nicolas <brouard@ined.fr>
379:
380: * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
381:
382: * imach.c: Summary: Fixing data parameter line
383:
384: 2016-12-15 Brouard Nicolas <brouard@ined.fr>
385:
386: * imach.c: Summary: 0.99 in progress
387:
388: 2016-09-15 Brouard Nicolas <brouard@ined.fr>
389:
390: * imach.c: *** empty log message ***
391:
392: * imach.c: Summary: not working
393:
394: 2016-09-08 Brouard Nicolas <brouard@ined.fr>
395:
396: * imach.c: Summary: continue
397:
398: 2016-09-07 Brouard Nicolas <brouard@ined.fr>
399:
400: * imach.c: Summary: Starting values from frequencies
401:
402: * imach.c: *** empty log message ***
403:
404: 2016-09-02 Brouard Nicolas <brouard@ined.fr>
405:
406: * imach.c: *** empty log message ***
407:
408: 2016-08-30 Brouard Nicolas <brouard@ined.fr>
409:
410: * imach.c: Summary: Fixing a lots
411:
412: 2016-08-29 Brouard Nicolas <brouard@ined.fr>
413:
414: * imach.c: Summary: gnuplot problem in Back projection to fix
415:
416: * imach.c: Summary: Better
417:
418: 2016-08-26 Brouard Nicolas <brouard@ined.fr>
419:
420: * imach.c:
421: Summary: Improvement in Powell output in order to copy and paste
422:
423: * imach.c: Summary: Starting tests of 0.99
424:
425: * imach.c: Summary: to valgrind
426:
427: 2016-08-25 Brouard Nicolas <brouard@ined.fr>
428:
429: * imach.c: *** empty log message ***
430:
431: 2016-08-23 Brouard Nicolas <brouard@ined.fr>
432:
433: * imach.c: *** empty log message ***
434:
435: * imach.c: Summary: not working
436:
437: 2016-08-22 Brouard Nicolas <brouard@ined.fr>
438:
439: * imach.c: Summary: not working
440:
441: * imach.c: Summary: Not working
442:
443: 2016-07-23 Brouard Nicolas <brouard@ined.fr>
444:
445: * imach.c: Summary: Completing for func too
446:
447: 2016-07-22 Brouard Nicolas <brouard@ined.fr>
448:
449: * imach.c: Summary: Fixing some arrays, still debugging
450:
451: 2016-07-21 Brouard Nicolas <brouard@ined.fr>
452:
453: * imach.c:
454: Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
455:
456: 2016-07-12 Brouard Nicolas <brouard@ined.fr>
457:
458: * imach.c: Summary: temp
459:
460: * imach.c: Summary: saving but not running
461:
462: 2016-07-01 Brouard Nicolas <brouard@ined.fr>
463:
464: * imach.c: Summary: Fixes
465:
466: 2016-02-19 Brouard Nicolas <brouard@ined.fr>
467:
468: * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
469:
470: * setup.iss, Makefile, version.h: *** empty log message ***
471:
472: * imach.c: Summary: temporary
473:
474: 2016-02-17 Brouard Nicolas <brouard@ined.fr>
475:
476: * imach.c: Summary: Probably last 0.98 stable version 0.98r6
477:
478: 2016-02-16 Brouard Nicolas <brouard@ined.fr>
479:
480: * imach.c: Summary: minor bug
481:
482: * imach.c: Summary: 0.99r2
483:
484: 2016-02-15 Brouard Nicolas <brouard@ined.fr>
485:
486: * imach.c: *** empty log message ***
487:
488: 2016-02-12 Brouard Nicolas <brouard@ined.fr>
489:
490: * imach.c: Summary: 0.99 Back projections
491:
492: 2015-12-23 Brouard Nicolas <brouard@ined.fr>
493:
494: * imach.c: Summary: Experimental backcast
495:
496: 2015-12-18 Brouard Nicolas <brouard@ined.fr>
497:
498: * imach.c: Summary: 0.98r4 Warning and status=-2
499:
500: Version 0.98r4 is now:
501: - displaying an error when status is -1, date of interview unknown and date of death known;
502: - permitting a status -2 when the vital status is unknown at a known date of right truncation.
503: Older changes concerning s=-2, dating from 2005 have been supersed.
504:
505: * Makefile: *** empty log message ***
506:
507: 2015-12-16 Brouard Nicolas <brouard@ined.fr>
508:
509: * Makefile: *** empty log message ***
510:
511: * imach.c: Summary: 0.98r4 working
512:
513: * Makefile: Summary: linuxrpm added
514:
515: * Makefile: *** empty log message ***
516:
517: * imach.c: Summary: temporary not working
518:
519: 2015-12-11 Brouard Nicolas <brouard@ined.fr>
520:
521: * imach.c: Summary: 0.98r4
522:
523: 2015-12-08 Brouard Nicolas <brouard@ined.fr>
524:
525: * Makefile: *** empty log message ***
526:
527: 2015-11-21 Brouard Nicolas <brouard@ined.fr>
528:
529: * Makefile:
530: Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
531:
532: * imach.c: Summary: minor typo
533:
534: * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
535:
536: Author: Nicolas Brouard
537:
538: 2015-11-18 Brouard Nicolas <brouard@ined.fr>
539:
540: * imach.c: Summary: Start working on projected prevalences
541:
542: 2015-11-17 Brouard Nicolas <brouard@ined.fr>
543:
544: * imach.c: Summary: Adding ftolpl parameter
545: Author: N Brouard
546:
547: We had difficulties to get smoothed confidence intervals. It was due
548: to the period prevalence which wasn't computed accurately. The inner
549: parameter ftolpl is now an outer parameter of the .imach parameter
550: file after estepm. If ftolpl is small 1.e-4 and estepm too,
551: computation are long.
552:
553: * version.h: *** empty log message ***
554:
555: * imach.c: Summary: temporary
556:
557: 2015-10-27 Brouard Nicolas <brouard@ined.fr>
558:
559: * Makefile: *** empty log message ***
560:
561: * setup.iss.in: Summary: some new subdirs
562:
563: * imach.c: *** empty log message ***
564:
565: * setup.iss.in:
566: Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
567:
568: 2015-10-24 Brouard Nicolas <brouard@ined.fr>
569:
570: * imach.c: *** empty log message ***
571:
572: 2015-10-23 Brouard Nicolas <brouard@ined.fr>
573:
574: * imach.c:
575: Summary: 0.98r3 some clarification for graphs on likelihood contributions
576:
577: 2015-10-01 Brouard Nicolas <brouard@ined.fr>
578:
579: * imach.c: Summary: Some new graphs of contribution to likelihood
580:
581: 2015-09-30 Brouard Nicolas <brouard@ined.fr>
582:
583: * Makefile:
584: Summary: Version read from version.h, itself read with cmake
585:
586: * imach.c: Summary: looking at better estimation of the hessian
587:
588: Also a better criteria for convergence to the period prevalence And
589: therefore adding the number of years needed to converge. (The
590: prevalence in any alive state shold sum to one
591:
592: * Makefile: *** empty log message ***
593:
594: 2015-09-22 Brouard Nicolas <brouard@ined.fr>
595:
596: * imach.c:
597: Summary: Adding some overall graph on contribution to likelihood. Might change
598:
599: 2015-09-15 Brouard Nicolas <brouard@ined.fr>
600:
601: * Makefile: *** empty log message ***
602:
603: * imach.c: Summary: 0.98r0
604:
605: - Some new graphs like survival functions
606: - Some bugs fixed like model=1+age+V2.
607:
608: * ChangeLog, Makefile: Summary: 0.98r0
609:
610: * CMakeLists.txt: Summary: Some tests for setup.iss
611:
612: 2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
613:
614: * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
615:
616: 2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
617:
618: * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
619:
620: 2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
621:
622: * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
623:
624: 2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
625:
626: * imach.c (Module): Merging 1.61 to 1.162
627:
628: 2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
629:
630: * prevlim.h (Module):
631:
632: 2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
633:
634: * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
635: (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
636:
637: 2010-04-29 brouard <brouard@ined.fr>
638:
639: * imach.c (Module): Checking covariates for more complex models
640: than V1+V2. A lot of change to be done. Unstable.
641:
642: 2010-04-26 brouard <brouard@ined.fr>
643:
644: * imach.c (Module): merging some libgsl code. Fixing computation
645: of likelione (using inter/intrapolation if mle = 0) in order to
646: get same likelihood as if mle=1.
647: Some cleaning of code and comments added.
648:
649: 2009-10-29 brouard <brouard@ined.fr>
650:
651: * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
652:
653: 2006-06-30 Brouard Nicolas <brouard@localhost>
654:
655: * imach.c (Module): Clarifications on computing e.j
656:
657: 2006-04-28 Brouard Nicolas <brouard@localhost>
658:
659: * imach.c (Module): Yes the sum of survivors was wrong since
660: imach-114 because nhstepm was no more computed in the age
661: loop. Now we define nhstepma in the age loop.
662: (Module): In order to speed up (in case of numerous covariates) we
663: compute health expectancies (without variances) in a first step
664: and then all the health expectancies with variances or standard
665: deviation (needs data from the Hessian matrices) which slows the
666: computation.
667: In the future we should be able to stop the program is only health
668: expectancies and graph are needed without standard deviations.
669:
670: 2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
671:
672: * imach.iss (Module):
673:
674: * imach.c (Module): bugs in evsi + population file added in htm output file
675:
676: 2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
677:
678: * imach.c (Module):
679:
680: 2006-03-20 Brouard Nicolas <brouard@localhost>
681:
682: * imach.c (Module): <title> changed, corresponds to .htm file
683: name. <head> headers where missing.
684:
685: * Makefile (Module): 0.98g
686:
687: * imach.c (Module): Weights can have a decimal point as for
688: English (a comma might work with a correct LC_NUMERIC environment,
689: otherwise the weight is truncated).
690: Modification of warning when the covariates values are not 0 or
691: 1.
692: Version 0.98g
693:
694: 2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
695:
696: * imach.c (Module): Comments concerning covariates added
697:
698: * noreg-setup.iss (Module): Version 0.98f
699:
700: * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
701:
702: * imach.c (Module): refinements in the computation of lli if
703: status=-2 in order to have more reliable computation if stepm is
704: not 1 month. Version 0.98f
705:
706: 2006-03-15 Brouard Nicolas <brouard@localhost>
707:
708: * imach.c (Module): Bug if status = -2, the loglikelihood was
709: computed as likelihood omitting the logarithm. Version O.98e
710:
711: 2006-03-14 Brouard Nicolas <brouard@localhost>
712:
713: * imach.c (Module): varevsij Comments added explaining the second
714: table of variances if popbased=1 .
715: (Module): Covariances of eij, ekl added, graphs fixed, new html link.
716: (Module): Function pstamp added
717: (Module): Version 0.98d
718:
719: 2006-03-06 Brouard Nicolas <brouard@localhost>
720:
721: * imach.c (Module): Variance-covariance wrong links and
722: varian-covariance of ej. is needed (Saito).
723:
724: 2006-02-27 Brouard Nicolas <brouard@localhost>
725:
726: * imach.c (Module): One freematrix added in mlikeli!
727:
728: 2006-02-26 Brouard Nicolas <brouard@localhost>
729:
730: * imach.c (Module): Some improvements in processing parameter
731: filename with strsep.
732:
733: 2006-02-24 Brouard Nicolas <brouard@localhost>
734:
735: * imach.c (Module): Memory leaks checks with valgrind and:
736: datafile was not closed, some imatrix were not freed and on matrix
737: allocation too.
738:
739: 2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
740:
741: * strsep.c (Module): Inclusion because not in mingw32!!!
742:
743: * setup.iss.in (Module): IMACHSETUPVERSION added
744:
745: * noreg-setup.iss (Module): added to cvs tree
746:
747: * Makefile (Module): IMACHSETUPVERSION added
748:
749: 2006-01-30 BROUARD Nicolas <brouard@localhost>
750:
751: * Makefile (Module, Module): Latest Makefile
752:
753: * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
754:
755: 2006-01-27 BROUARD Nicolas <brouard@localhost>
756:
757: * noreg-setup.iss (Module): ADDED
758:
759: 2006-01-24 BROUARD Nicolas <brouard@localhost>
760:
761: * imach.c (Module): Comments (lines starting with a #) are allowed in data.
762:
763: 2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
764:
765: * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
766:
767: * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
768:
769: 2005-09-30 <lievre@PC_00595>
770:
771: * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
772: (Module): If the status is missing at the last wave but we know
773: that the person is alive, then we can code his/her status as -2
774: (instead of missing=-1 in earlier versions) and his/her
775: contributions to the likelihood is 1 - Prob of dying from last
776: health status (= 1-p13= p11+p12 in the easiest case of somebody in
777: the healthy state at last known wave). Version is 0.98
778:
779: 2004-05-20 Brouard Nicolas <brouard@localhost>
780:
781: * imach.c (Repository):
782: Agnes added a direct estimation of mortality (without the need of
783: computing period prevalence and differential mortality). Thus here
784: is version 0.97a which has been distributed to some people at
785: REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
786: mortality using covariates is not done today. Estimating direct
787: mortality is a very different process because it doesn't need
788: interpolation because it is easy to get the lx from the force of
789: the mortality mux in the simplest case as for a Gompertz (log mux
790: = a + b*x . But we have been able to incorporate the new code
791: within former imach program (0.96d) without deteriorating too much
792: the understanding of the program.
793:
794: 2003-06-25 <brouard@BROUARD>
795:
796: * imach.c (Module): On windows (cygwin) function asctime_r doesn't
797: exist so I changed back to asctime which exists.
798: (Module): Version 0.96b
799:
800: 2003-06-24 <brouard@BROUARD>
801:
802: * imach.c (Module): Some bugs corrected for windows. Also, when
803: mle=-1 a template is output in file "or"mypar.txt with the design
804: of the covariance matrix to be input.
805:
806: 2003-06-25 Brouard Nicolas <brouard@homebrou>
807:
808: * imach.c (Repository): Duplicated warning errors corrected.
809: (Repository): Elapsed time after each iteration is now output. It
810: helps to forecast when convergence will be reached. Elapsed time
811: is stamped in powell. We created a new html file for the graphs
812: concerning matrix of covariance. It has extension -cov.htm.
813:
814: 2003-06-23 Brouard Nicolas <brouard@homebrou>
815:
816: * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
817:
818: 2003-06-18 Brouard Nicolas <brouard@homebrou>
819:
820: * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
821:
822: 2003-06-17 Brouard Nicolas <brouard@homebrou>
823:
824:
825: * imach.c (Repository): Check when date of death was earlier that
826: current date of interview. It may happen when the death was just
827: prior to the death. In this case, dh was negative and likelihood
828: was wrong (infinity). We still send an "Error" but patch by
829: assuming that the date of death was just one stepm after the
830: interview.
831: (Repository): Because some people have very long ID (first column)
832: we changed int to long in num[] and we added a new lvector for
833: memory allocation. But we also truncated to 8 characters (left
834: truncation)
835:
836: (Repository): No more line truncation errors.
837:
838: 2003-06-14 Brouard Nicolas <brouard@homebrou>
839:
840: * imach.c (Repository): Add of a routine likelione (likelihood
841: only once) which prints on a text file
842: (ilk) the contributions to the likelihood for each
843: individual/wave.
844:
845: 2003-06-13 Brouard Nicolas <brouard@homebrou>
846: * imach.c (Repository): Replace "freqsummary" at a correct
847: place. It differs from routine "prevalence" which may be called
848: many times. Probs is memory consuming and must be used with
849: parcimony.
850:
851: 2003-06-17 <brouard@BROUARD>
852:
853: * timeval.h (Module): Added included file to make use of
854: gettimeofday working on win32 with cygwin.
855:
856: 2003-05-16 Brouard Nicolas <brouard@brouard>
857: * imach.c (Module): Insert of a warning if the delay between two
858: waves is negative.
859:
860: * imach.c (Module):
861:
862: 2003-05-03 <brouard@BROUARD>
863:
864: * imach.c: Some cleaning
865:
866: 2003-03-28 <brouard@BROUARD>
867: * imach.c (Module): In version up to 0.92 likelihood was computed
868: as if date of death was unknown. Death was treated as any other
869: health state: the date of the interview describes the actual state
870: and not the date of a change in health state. The former idea was
871: to consider that at each interview the state was recorded
872: (healthy, disable or death) and IMaCh was corrected; but when we
873: introduced the exact date of death then we should have modified
874: the contribution of an exact death to the likelihood. This new
875: contribution is smaller and very dependent of the step unit
876: stepm. It is no more the probability to die between last interview
877: and month of death but the probability to survive from last
878: interview up to one month before death multiplied by the
879: probability to die within a month. Thanks to Chris
880: Jackson for correcting this bug. Former versions increased
881: mortality artificially. The bad side is that we add another loop
882: which slows down the processing. The difference can be up to 10%
883: lower mortality.
884:
885: 2002-05-30 <brouard@BROUARD>
886:
887: * imach.c (Module): Add correlation matrix of one-step
888: probabilities and covariance matrix
1.54 brouard 889:
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