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Diff for /imach/src/Makefile between versions 1.57 and 1.86

version 1.57, 2015/03/11 13:43:20 version 1.86, 2019/05/22 19:44:04
Line 1 Line 1
 VERSION=0.98q0  #Version has to be set in ../CMakeLists.txt too.
 COPYRIGHT=Copyright (C)  2002-2015 INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121) - Intel Software 2015  #VERSION=0.98r6
 IMACHSETUPVERSION=ilc  #VERSION=$(shell echo `grep IMACH_VERSION__ version.h | echo 'titi'`)
   VERSION=$(shell echo `grep IMACH_VERSION__ version.h | awk 'BEGIN { FS = "[ \t\n\"]+" }  { print $$3 }'`)
   OSTYPE = $(shell echo $$OSTYPE)
   # DRIVEG is for VirtualBox Windows 64bit 
   DRIVEG=f:
   #DIRG is the corresponding build directory for Virtual Windows
   DIRG=\imach\cvs\imach\build
   COPYRIGHT=Copyright (C)  2002-2016 INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121) - Intel Software 2016-18
   IMACHSETUPVERSION=icl
   # This is for Windows only
 #IMACHSETUPVERSION=mvc  #IMACHSETUPVERSION=mvc
   
 #       Linux  #       Linux
 # make _linux=1 imachopt  # make _linux=1 imachopt
 # make _linux=1 imach  # make _linux=1 imach
 #  # make _linux=1 imachrpm
   # cd to build/gnulinux ; cmake ../..; cpack -D CPACK_RPM_PACKAGE_DEBUG=1 -D CPACK_RPM_SPEC_INSTALL_POST="/bin/true" -G RPM
 # make _linux32onosx=1 imachopt  # make _linux32onosx=1 imachopt
 # make _linux64onosx=1 imachopt  # make _linux64onosx=1 imachopt
   
 #       OS/X  #       OS/X
   # make _macosx=1 imachdmg
 # make _intel64onosx=1 imachopt  # make _intel64onosx=1 imachopt
 # make _intel32onosx=1 imachopt  # make _intel32onosx=1 imachopt
 # make _intelUNBonosx=1 imachdmg # Not implemented (not useful)  # make _intelUNBonosx=1 imachdmg # Not implemented (not useful)
 # make _macosx=1 imach  # make _macosx=1 imach
 # make _macosx=1 imachopt  # make _macosx=1 imachopt
 # make _macosx=1 imachdmg  
 #  valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ~/Documents/imachcvs/imach/src/imach-1.129cvsmac radlc-1.129.imach  #  valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ~/Documents/imachcvs/imach/src/imach-1.129cvsmac radlc-1.129.imach
   
 #        Windows  #        Windows
 # make _windowsonosx=1 imachILC-setup (touch setup.iss.in) #binary should have been compiled on Windows with Intel  # make _windowsonosx=1 imachICL-setup (touch setup.iss.in) #binary should have been compiled on Windows with Intel
 # make _windowsonosx=1 imachILC64-setup (touch setup.iss.in) #binary should have been compiled on Windows with Intel  
 # make _windowsonosx=1 imachMVC-setup (touch setup.iss.in) #binary should have been compiled on Windows with cl  # make _windowsonosx=1 imachMVC-setup (touch setup.iss.in) #binary should have been compiled on Windows with cl
 # make _windowsonosx=1 imachMVC-noreg-setup  # make _windowsonosx=1 imachMVC-noreg-setup
 #  #
Line 44  IMACHSETUPVERSION=ilc Line 53  IMACHSETUPVERSION=ilc
 #TESTFILE=$$HOME/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc-test-mac/adecode-1.142c.imach  #TESTFILE=$$HOME/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc-test-mac/adecode-1.142c.imach
 #TESTFILE=$(HOME)/Documents/Recherches/REVES/carol/carol-june2014/educadlmwt24.imach  #TESTFILE=$(HOME)/Documents/Recherches/REVES/carol/carol-june2014/educadlmwt24.imach
 #TESTFILE=$(HOME)/Documents/Recherches/REVES/Biaspar/biaspar-wopowell.imach  #TESTFILE=$(HOME)/Documents/Recherches/REVES/Biaspar/biaspar-wopowell.imach
 TESTFILE=$(HOME)/Documents/Recherches/REVES/Biaspar/rbiaspar-098p.imach  #TESTFILE=$(HOME)/Documents/Recherches/REVES/Biaspar/rbiaspar-098p.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Aaron/brouard/results/COVARAITE_94/rmypar24pis1cov1-age.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Flavia/rADL0w_V1V2b.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Yao/rrtest3b.imach
   #TESTFILE=$(HOME)//Documents/Recherches/REVES/Flavia/Flavia-nov-2015/rtest3c.imach
   #TESTFILE=/mnt/tugault/Documents/Recherches/REVES/Yao/rhrs-yao-test-back.imach
   #TESTFILE=/mnt/tugault/Documents/Recherches/REVES/Flavia/Flavia-nov-2015/rtest3bb.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Flavia/Flavia-nov-2015/rtest3bb.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/saito-12-feb-2016/rHRS_relig_import_M_NB.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Biaspar/biaspar-0.98r-powellf1f3linmnb-zeroes.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Yao/Yao-19-jan-2016/r2V4V3V5.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Yao/Yao-19-jan-2016/r2b4V4V3V5.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Yao/Yao-19-jan-2016/Vn1b.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Saito-PAA-2018/rrLvngArrgJapan-two-1b.imach
   TESTFILE=$(HOME)/Documents/Recherches/HRS/RAND_HRS/imachb.imach
   #TESTFILE=$(HOME)/Documents/Recherches/REVES/Yao/Yao-19-jan-2016/rrrV4V3V5-suite6.imach
 #TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc-test-mac/adecode-1.142c.imach  #TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc-test-mac/adecode-1.142c.imach
 #TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc_test_magei4/radlc_often.imach  #TESTFILE=$(HOME)/Documents/Recherches/REVES/SAITO/Tokyo2014/adlc_test_magei4/radlc_often.imach
 #CC= gcc -v  #CC= gcc -v
Line 54  GCC= gcc Line 78  GCC= gcc
 ifdef _macosx  ifdef _macosx
 # Mac OS/X version  # Mac OS/X version
 LFLAGS= -g -lm   LFLAGS= -g -lm 
 CFLAGS= -g -DDEBUG   #CFLAGS= -g -DDEBUG 
   CFLAGS= -g 
 LFLAGSOPT= -O3 -lm   LFLAGSOPT= -O3 -lm 
 CFLAGSOPT= -O3   CFLAGSOPT= -O3 
   CP= cp
 CROSSCOMPILATION= -DCROSS=0  CROSSCOMPILATION= -DCROSS=0
 UNIX2DOS= echo "Unix2dos "   UNIX2DOS= echo "Unix2dos " 
 DSYMUTIL= dsymutil  DSYMUTIL= dsymutil
Line 208  endif Line 234  endif
 ifdef _linux  ifdef _linux
 #CFLAGS= -g -DUNIX -DDEBUGHESS  #CFLAGS= -g -DUNIX -DDEBUGHESS
 #CFLAGS= -g -DDEBUG -DFIXMNBRAK  #CFLAGS= -g -DDEBUG -DFIXMNBRAK
 CFLAGS= -g -DDEBUG   #CFLAGS= -g -DDEBUG 
   CFLAGS= -g
 LFLAGS= -g -lm  LFLAGS= -g -lm
 IGSL= -I/usr/include/gsl  IGSL= -I/usr/include/gsl
 LGSL= -lgsl -lgslcblas  LGSL= -lgsl -lgslcblas
Line 234  TMPSCRIPTIN=setup.iss.in Line 261  TMPSCRIPTIN=setup.iss.in
 APPLICATION=IMaCh  APPLICATION=IMaCh
 APPNAME=$(APPLICATION)-$(VERSION)  APPNAME=$(APPLICATION)-$(VERSION)
 APPCOMPILATIONMODE=$(IMACHSETUPVERSION)  APPCOMPILATIONMODE=$(IMACHSETUPVERSION)
 GNUPLOTVERSION=4.6  GNUPLOTVERSION=5.1
 LICENSE=Copying  LICENSE=Copying
 TMPSETUPEXE=imach-$(VERSION)-$(IMACHSETUPVERSION)-setup.exe  TMPSETUPEXE=imach-$(VERSION)-$(IMACHSETUPVERSION)-setup.exe
 TMPNOREGSETUPEXE=imach-$(VERSION)-$(IMACHSETUPVERSION)-noreg-setup.exe  TMPNOREGSETUPEXE=imach-$(VERSION)-$(IMACHSETUPVERSION)-noreg-setup.exe
Line 276  $(TMPNOREGSETUPSCRIPT): $(TMPSCRIPTIN) Line 303  $(TMPNOREGSETUPSCRIPT): $(TMPSCRIPTIN)
 $(TMPSETUPEXE): $(TMPSETUPSCRIPT)  $(TMPSETUPEXE): $(TMPSETUPSCRIPT)
         $(SETUPCOMP) /cc $(TMPSETUPSCRIPT)          $(SETUPCOMP) /cc $(TMPSETUPSCRIPT)
   
 $(TMPNOREGSETUPEXE): $(TMPNOREGSETUPSCRIPT)  #$(TMPNOREGSETUPEXE): $(TMPNOREGSETUPSCRIPT)
         $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)  #       $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
   
 PARAM=mypar1  PARAM=mypar1
   
Line 295  imachcyg-noreg-setup: imachcygopt.exe no Line 322  imachcyg-noreg-setup: imachcygopt.exe no
         $(CP) imachcygopt.exe imach$(VERSION)-$(BINVERSION).exe          $(CP) imachcygopt.exe imach$(VERSION)-$(BINVERSION).exe
         $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)          $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
         cp Output/$(TMPNOREGSETUPEXE) imachcyg-noreg-setup          cp Output/$(TMPNOREGSETUPEXE) imachcyg-noreg-setup
   # ICL compiler 64
   imachICL-build: imach.c
           icl /GS /W3 /Zc:wchar_t /O2  /D "WIN32" /D "NDEBUG" /D "_CONSOLE" /D "UNICODE" /Qipo /Zc:forScope  /MT imach.c 
   #/GS /W3 /Gy /Zc:wchar_t /Zi /O2 /Fd"x64\Release\vc120.pdb" /D "WIN32" /D "NDEBUG" /D "_CONSOLE" /D "_LIB" /D "_UNICODE" /D "UNICODE" /Qipo /Zc:forScope /Oi /MT /Fa"x64\Release\" /EHsc /nologo /Fo"x64\Release\" /Qprof-dir "x64\Release\" /Fp"x64\Release\IMaCh-icl-x64-0.98q2.pch"
   #  /Users/nbrouard/Documents/imach/imach-gui/build/icl64/Release/imach.exe
 # both 32 and 64 executables should have been built on Windows with Intel compiler.  # both 32 and 64 executables should have been built on Windows with Intel compiler.
 imachILC-setup: IMaCh-ilc64-$(VERSION).exe IMaCh-ilc32-$(VERSION).exe setup.iss  
         pwd  
         $(SETUPCOMP) /cc setup.iss  
         $(CP) Output/$(TMPSETUPEXE) imachILC-setup  
   
 imachILC64-setup: IMaCh-ilc64-$(VERSION).exe setup.iss  imachICL-setup: ../build/icl64/Release/IMaCh-$(VERSION).exe ../build/icl32/Release/IMaCh-$(VERSION).exe setup.iss ../distributions/windows/mybuildicl64.bat ../distributions/windows/mybuildicl32.bat setup.iss 
         pwd          pwd
         $(CP) IMaCh-ilc64-$(VERSION).exe imach.exe          touch setup.iss.in
         $(SETUPCOMP) /cc setup.iss          $(SETUPCOMP) /cc setup.iss
         $(CP) Output/$(TMPSETUPEXE) imachILC64-setup          $(CP) Output/$(TMPSETUPEXE) imachICL-setup
   
 imachILC64-noreg-setup: IMaCh-ilc64-$(VERSION).exe noreg-setup.iss  # imachICL64-setup: IMaCh-icl64-$(VERSION).exe setup.iss
   #       pwd
   #       $(CP) IMaCh-icl64-$(VERSION).exe imach.exe
   #       $(SETUPCOMP) /cc setup.iss
   #       $(CP) Output/$(TMPSETUPEXE) imachICL64-setup
   
   imachICL64-noreg-setup: IMaCh-icl64-$(VERSION).exe noreg-setup.iss
         touch setup.iss.in          touch setup.iss.in
         $(CP) IMaCh-ilc64-$(VERSION).exe imach.exe  
         $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)          $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
         $(CP) Output/$(TMPSETUPEXE) imachILC64-noreg-setup          $(CP) Output/$(TMPSETUPEXE) imachICL64-noreg-setup
   
 imachILC32-setup: IMaCh-ilc32-$(VERSION).exe setup.iss  ../build/icl64/Release/IMaCh-$(VERSION).exe: imach.c ../distributions/windows/mybuildicl64.bat
         touch setup.iss.in          rm -rf ../build/icl64  && mkdir ../build/icl64
         $(CP) IMaCh-ilc32-$(VERSION).exe imach.exe          cp ../distributions/windows/mybuildicl64.bat ../build/icl64/
         $(SETUPCOMP) /cc setup.iss          cd ../build/icl64
         $(CP) Output/$(TMPSETUPEXE) imachILC32-setup          VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\System32\cmd.exe" \
    --username brouard  --verbose --wait-stdout  --wait-stderr -- "C:\Windows\SysWOW64\cmd.exe" "/c" "$(DRIVEG)$(DIRG)\icl64\mybuildicl64.bat" "$(VERSION)" "$(DRIVEG)" "$(DIRG)"
   
   #       VBoxManage --nologo guestcontrol "Windows7-64" run --exe "c:\\windows\\system32\\ipconfig.exe" --username brouard  --verbose  --wait-stdout  --wait-stderr -- "/all"
   #       VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\SysWOW64\cmd.exe" --username brouard  --verbose  --wait-stdout  --wait-stderr -- "/c" "DIR"
   
   #       VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\SysWOW64\cmd.exe" --username brouard  --verbose  --wait-stdout  --wait-stderr -- "/c" "DIR" 
   #       VBoxManage --nologo guestcontrol "Windows7-64" run --exe "c:\\windows\\system32\\ipconfig.exe" --username brouard  --verbose  --wait-stdout  --wait-stderr -- "/all"
   #VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\SysWOW64\cmd.exe" \
   #       --username brouard  --verbose  --wait-stdout  --wait-stderr -- "/c" "$(DRIVEG)$(DIRG)\icl64\mybuildicl64.bat" "$(VERSION)" "$(DRIVEG)" "$(DIRG)"
   
   ../build/icl32/Release/IMaCh-$(VERSION).exe: imach.c ../distributions/windows/mybuildicl32.bat
           rm -rf ../build/icl32 && mkdir -p ../build/icl32
           cp ../distributions/windows/mybuildicl32.bat ../build/icl32/
           cd ../build/icl32
           VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\System32\cmd.exe" \
     --username brouard  --verbose --wait-stdout -- "C:\Windows\SysWOW64\cmd.exe" "/c" "$(DRIVEG)$(DIRG)\icl32\mybuildicl32.bat" "$(VERSION)" "$(DRIVEG)" "$(DIRG)"
   
   #VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\SysWOW64\cmd.exe" \
   # --username brouard  --verbose  --wait-stdout -- "/c" "$(DRIVEG)$(DIRG)\icl32\mybuildicl32.bat" "$(VERSION)" "$(DRIVEG)" "$(DIRG)"
   
   ../build/vs32/Release/IMaCh-$(VERSION).exe: imach.c mybuildvs32.bat
           rm -rf ../build/vs32 && mkdir -p ../build/vs32
           cp mybuildvs32.bat ../build/vs32/
           cd ../build/vs32
           VBoxManage --nologo guestcontrol "Windows7-64" run --exe "C:\Windows\System32\cmd.exe" \
           --username brouard  --verbose  --wait-stdout --  "C:\Windows\SysWOW64\cmd.exe" "/c" "g:\imach\imach-gui\build\vs32\mybuildvs32.bat" "$(VERSION)"
   # C:\Windows\SysWOW64\cmd.exe /E:ON /V:ON /K "g:\imach\imach-gui\build\icl32\mybuild.bat"
   #WORK   --username brouard  --verbose --wait-exit --wait-stdout -- "/c" "c:\users\brouard\mybuild.bat"
   #       --username brouard  --verbose --wait-exit --wait-stdout -- "/c" "g: && cd \imach\imach-gui\build\icl32 && mybuild.bat"
   #       --username brouard  --verbose --wait-exit --wait-stdout -- "/c" "g: && cd \imach\imach-gui\build\icl32-xp  &&" "C:\Program Files (x86)\Microsoft Visual Studio 12.0\Common7\Tools\VsDevCmd.bat" "&&" "C:\Program Files (x86)\Intel\Composer XE 2015\bin\ipsxe-comp-vars.bat" "ia32" "vs2013" "&&" "msbuild imach-0.98q3.vcxproj /t:Build /p:Configuration=Release"
   #       --username brouard --wait-exit --wait-stdout -- "/c" "g: && cd \imach\imach-gui\build\icl32-xp\ &&C:\Windows\SysWOW64\cmd.exe /E:ON /V:ON /K ""C:\Program Files (x86)\Intel\Composer XE 2015\bin\ipsxe-comp-vars.bat" ia32 vs2013"&& msbuild imach.vcxproj >c:\users\brouard\totog.txt"
   #               --username brouard --wait-exit --wait-stdout -- "/c" "g: && dir >c:\users\brouard\totog.txt"
   #C:\Windows\SysWOW64\cmd.exe /E:ON /V:ON /K ""C:\Program Files (x86)\Intel\Composer XE 2015\bin\ipsxe-comp-vars.bat" ia32 vs2013"
   #C:\Windows\SysWOW64\cmd.exe /E:ON /V:ON /K ""C:\Program Files (x86)\Intel\Composer XE 2015\bin\ipsxe-comp-vars.bat" intel64 vs2013"
   
   imachICL64-setup: ../build/icl64/Release/IMaCh-$(VERSION).exe setup.iss mybuildicl64.bat
   
   imachICL32-setup: ../build/icl32/Release/IMaCh-$(VERSION).exe setup.iss mybuildicl32.bat
   
 imachILC32-noreg-setup: IMaCh-ilc32.exe noreg-setup.iss  imachVS32-setup: ../build/vs32/Release/IMaCh-$(VERSION).exe setup.iss mybuildvs32.bat
   
   imachICL32-noreg-setup: IMaCh-icl32.exe noreg-setup.iss
         touch setup.iss.in          touch setup.iss.in
         $(CP) IMaCh-ilc32.exe imach.exe          $(CP) IMaCh-icl32.exe imach.exe
         $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)          $(SETUPCOMP) /cc $(TMPNOREGSETUPSCRIPT)
         $(CP) Output/$(TMPSETUPEXE) imachILC32-noreg-setup          $(CP) Output/$(TMPSETUPEXE) imachICL32-noreg-setup
   
 imachMVC-setup: imachMVC.exe setup.iss  imachMVC-setup: imachMVC.exe setup.iss
         touch setup.iss.in          touch setup.iss.in
         $(CP) imachMVC.exe imach.exe          $(CP) imachMVC.exe imach.exe
         $(SETUPCOMP) /cc setup.iss          $(SETUPCOMP) /cc setup.iss
         $(CP) Output/$(TMPSETUPEXE) imachcyg-setup          $(CP) Output/$(TMPSETUPEXE) imachMVC-setup
   
 # imachcyg-noreg-setup : imachcygopt imachcygopt.o setup.iss.in noreg-setup.iss $(TMPNOREGSETUPEXE)  # imachcyg-noreg-setup : imachcygopt imachcygopt.o setup.iss.in noreg-setup.iss $(TMPNOREGSETUPEXE)
 imachMVC-noreg-setup: imachMVC.exe noreg-setup.iss  imachMVC-noreg-setup: imachMVC.exe noreg-setup.iss
Line 357  ifdef _macosx Line 429  ifdef _macosx
 endif  endif
   
 imach.o : imach.c   imach.o : imach.c 
          $(CC) $(CFLAGS) $(CROSSCOMPILATION) -DDEBUGBRENT -c imach.c           $(CC) $(CFLAGS) $(CROSSCOMPILATION)  -c $<
   #        $(CC) $(CFLAGS) $(CROSSCOMPILATION)  -DDEBUGMEM -c $<
   #        $(CC) $(CFLAGS) $(CROSSCOMPILATION) -DDEBUGBRENT -c imach.c
   
   imach-0.98r: imach-0.98r.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   # Horrible no f3<f1 test and direct test,  converges if close to maximum otherwise diverges
   #calls = 13 & 1760, -2 Log likelihood = 46537.411806825585
   imach-0.98r.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLNOF3INFF1TEST -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION)  -c $<
   
   #################
   imach-0.98r-powellsf1f3: imach-0.98r-powellsf1f3.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   # test f3<f1 but direct test and no powell criteria which are NOPOWELLORIGINALNOMNBAKORIGINAL NOLINMINORIGINAL
   # diverges now from zeroes calls = 18 & 3163, -2 Log likelihood = 50929.075310962719
   # but converges if close to the maximum
   # calls = 13 & 1760, -2 Log likelihood = 46537.411806825585
   imach-0.98r-powellsf1f3.o : imach-0.98r.c 
            $(CC) $(CFLAGS)  -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE  $(CROSSCOMPILATION) -o $@  -c $<
   #        $(CC) $(CFLAGS)  -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE  $(CROSSCOMPILATION) -E -c $< | cppbeauty
   
   ######
   imach-0.98r-powellf1f3: imach-0.98r-powellf1f3.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   #Powell original but with mnbrak fix  -DUNKNOWNSTATUSNOTCONTRIBUTING -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE
   #diverges from zeroes
   # calls = 13 & 1760, -2 Log likelihood = 46537.411806825585 Real minumum
   imach-0.98r-powellf1f3.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLORIGINAL -DLINMINORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -o $@  -c $<
   imach-0.98r-powellf1f3.i : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLORIGINAL -DLINMINORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -E   -c $<| cppbeauty
   #        $(CC) $(CFLAGS) -DPOWELLORIGINAL -DLINMINORIGINAL  $(CROSSCOMPILATION) -E -o $@  -c $<
   
   ######################
   imach-0.98r-powell: imach-0.98r-powell.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   # Powell original means without -DPOWELLNOF3INFF1TEST (with F3<F1 test) 
   #calls = 33 & 4088, -2 Log likelihood = 46623.239341985027 reaches the maximum !
   #From zeroes doesn't reach the maximum calls = 34 & 4212, -2 Log likelihood = 46542.398769900567
   #calls = 34 & 4212, -2 Log likelihood = 46542.398769900567
   imach-0.98r-powell.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLORIGINAL -DLINMINORIGINAL -DMNBRAKORIGINAL  -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -o $@  -c $<
   #        $(CC) $(CFLAGS) -DPOWELLORIGINAL -DLINMINORIGINAL -DMNBRAKORIGINAL $(CROSSCOMPILATION) -E  -c $< | cppbeauty
   
   imach-0.98r-powell.i : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLORIGINAL -DLINMINORIGINAL -DMNBRAKORIGINAL $(CROSSCOMPILATION) -E -o $@ -c $< 
   
   ###############
   # powell test with f1f3 powell, linmin fix but no mnbrak fix
   imach-0.98r-powellf1f3lin: imach-0.98r-powellf1f3lin.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   # ?calls = 41 & 4718, -2 Log likelihood = 46690.242656475864
   #calls = 33 & 4088, -2 Log likelihood = 46623.239341985027
   # from zeroes calls = 34 & 4212, -2 Log likelihood = 46542.398769900567
   imach-0.98r-powellf1f3lin.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLORIGINAL -DMNBRAKORIGINAL  -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -o $@  -c $<
   
   #############
   
   
   # directest with f3<f1 without mnbrak fix but linmin fix
   imach-0.98r-powellf1f3orilin: imach-0.98r-powellf1f3orilin.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   #Maximum not reached but converge from zeroes
   #calls = 34 & 4212, -2 Log likelihood = 46542.398769900567
   imach-0.98r-powellf1f3orilin.o : imach-0.98r.c 
            $(CC) $(CFLAGS)  -DMNBRAKORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -o $@  -c $<
   
   #######
   
   # Powell test not direct, with mnbrak and linmin fixes
   imach-0.98r-powellf1f3linmnb: imach-0.98r-powellf1f3linmnb.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   # worst, diverges from zeroes -DDEBUGMNBRAK
   #calls = 18 & 3163, -2 Log likelihood = 50929.075310962719
   
   imach-0.98r-powellf1f3linmnb.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DDEBUG -DPOWELLORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -o $@  -c $<
   imach-0.98r-powellf1f3linmnb.i : imach-0.98r.c 
            $(CC) $(CFLAGS) -DDEBUG -DPOWELLORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE $(CROSSCOMPILATION) -E -c $< | cppbeauty
   #########
   
   # Powell test not direct, with mnbrak and linmin fixes
   imach-0.98r-powellf1f3linmnbiter: imach-0.98r-powellf1f3linmnbiter.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   #
   #
   
   imach-0.98r-powellf1f3linmnbiter.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DDEBUG -DPOWELLORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE -DNODIRECTIONCHANGEDUNTILNITER $(CROSSCOMPILATION) -o $@  -c $<
   imach-0.98r-powellf1f3linmnbiter.i : imach-0.98r.c 
            $(CC) $(CFLAGS) -DDEBUG -DPOWELLORIGINAL -DUNKNOWNSTATUSNOTCONTRIBUTING  -DDISPATCHINGKNOWNDEATHAFTERLASTWAVE -DNODIRECTIONCHANGEDUNTILNITER $(CROSSCOMPILATION) -E -c $< | cppbeauty
   #########
   
   
   imach-0.98r-powellf1f3ori: imach-0.98r-powellf1f3ori.o 
           $(CC) $(LFLAGS) -o $@ $<
   ifdef _macosx
           $(DSYMUTIL) $@
   endif
   
   # Powell  with -DPOWELLNOF3INFF1TEST which is not Powell original!
   #calls = 41 & 4718, -2 Log likelihood = 46690.242656475864, doesn't reach the maximum
   imach-0.98r-powellf1f3ori.o : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLNOF3INFF1TEST -DPOWELLORIGINAL -DLINMINORIGINAL -DMNBRAKORIGINAL $(CROSSCOMPILATION) -o $@  -c $< 
   imach-0.98r-powellf1f3ori.i : imach-0.98r.c 
            $(CC) $(CFLAGS) -DPOWELLNOF3INFF1TEST -DPOWELLORIGINAL -DLINMINORIGINAL -DMNBRAKORIGINAL $(CROSSCOMPILATION) -E -o $@  -c $<| cppbeauty
   
   
   
   
   
   
 imachtest.o : imach.c   imachtest.o : imach.c 
          $(CC) $(CFLAGS) $(CROSSCOMPILATION) -DPOWELLORIGINAL -DNRCORIGINAL -DINFINITYORIGINAL -DDEBUGBRENT -o imachtest.o -c imach.c           $(CC) $(CFLAGS) $(CROSSCOMPILATION) -DPOWELLORIGINAL -DNRCORIGINAL -DINFINITYORIGINAL -DDEBUGBRENT -o $@ -c $<
   
 #        $(CC) $(CFLAGS) $(CROSSCOMPILATION)  -DFIXMNBRAK -o imachtest.o -c imach.c  #        $(CC) $(CFLAGS) $(CROSSCOMPILATION)  -DFIXMNBRAK -o imachtest.o -c imach.c
   
Line 394  imachBOBYQAopt : imachBOBYQAopt.o Line 610  imachBOBYQAopt : imachBOBYQAopt.o
 imachBOBYQAopt.o : imach.c   imachBOBYQAopt.o : imach.c 
         $(CC) $(CFLAGS) -DNLOPT $(INLOPT) -DBOBYQA -o imachBOBYQAopt.o -c imach.c          $(CC) $(CFLAGS) -DNLOPT $(INLOPT) -DBOBYQA -o imachBOBYQAopt.o -c imach.c
   
   # imachback : imachback.o
   #       $(CC) $(LFLAGSOPT) -o imachback imachback.o
   
 imachopt : imachopt.o   imachopt : imachopt.o 
         $(CC) $(LFLAGSOPT) -o imachopt imachopt.o          $(CC) $(LFLAGSOPT) -o imachopt imachopt.o
Line 405  ifdef _intel64onosx Line 623  ifdef _intel64onosx
 endif  endif
 ifdef _macosx  ifdef _macosx
         $(STRIP) imach          $(STRIP) imach
           $(STRIP) imachopt
 endif  endif
 ifdef _linux32onosx  ifdef _linux32onosx
         (cd .. && $(TAR) jcvf src/Output/imach-Linux-$(VERSION)-$(BINVERSION).tar.bz2 bin html/doc/biaspar.imach html/doc/data1.txt)          (cd .. && $(TAR) jcvf src/Output/imach-Linux-$(VERSION)-$(BINVERSION).tar.bz2 bin html/doc/biaspar.imach html/doc/data1.txt)
Line 413  ifdef _linux64onosx Line 632  ifdef _linux64onosx
         (cd .. && $(TAR) jcvf src/Output/imach-Linux-$(VERSION)-$(BINVERSION).tar.bz2 bin html/doc/biaspar.imach html/doc/data1.txt)          (cd .. && $(TAR) jcvf src/Output/imach-Linux-$(VERSION)-$(BINVERSION).tar.bz2 bin html/doc/biaspar.imach html/doc/data1.txt)
 endif  endif
   
 imachopt.o : imach.c  imachback: imachback.o 
           $(CC) $(LFLAGS) -DBACKCASTWO -o imachback imachback.o
   ifdef _macosx
           $(DSYMUTIL) imachback
   endif
   
   imachback.o : imachback.c version.h
           $(CC)  $(CFLAGS) $(CROSSCOMPILATION)  -c $<
   
   imachopt.o : imach.c version.h
         $(CC) $(CFLAGSOPT) $(CROSSCOMPILATION) -o imachopt.o -c imach.c          $(CC) $(CFLAGSOPT) $(CROSSCOMPILATION) -o imachopt.o -c imach.c
 #       $(CC) $(CFLAGSOPT) -DPOWELL -o imachopt.o -c imach.c  #       $(CC) $(CFLAGSOPT) -DPOWELL -o imachopt.o -c imach.c
   
 imachUB : imach32 imach64  imachUB : imach32 imach64
         lipo -create -arch i386 imach_32 -arch x86_64 imach_64 -output imach$(VERSION)          lipo -create -arch i386 imach_32 -arch x86_64 imach_64 -output imach$(VERSION)
   
   imachrpm : imachopt.o 
           pwd
           (cd ../build && rm -r gnulinux && mkdir gnulinux && cd gnulinux ;\
           pwd ;\
           cmake ../..;\
           cmake --build . ; \
           echo $(OSTYPE);\
           cpack  --debug --verbose -D CPACK_RPM_PACKAGE_DEBUG=1 -G RPM;\
           cp  imach-$(VERSION)-*.rpm ../../src/Output/ ;)
   
   imachsrcrpm : imachopt.o 
           pwd
           (cd ../build && rm -r gnulinux && mkdir gnulinux && cd gnulinux ;\
           pwd ;\
           cmake ../..;\
           cmake --build . ; \
           echo $(OSTYPE);\
           cpack --debug --verbose -D CPACK_RPM_PACKAGE_DEBUG=1 -G RPM --config ./CPackSourceConfig.cmake;\
           cp  imach-$(VERSION)-*.rpm ../../src/Output/ ;)
   
 #imachdmg : imachopt.o create-dmg applet IMaChInfo.plist.in IMaChPkgInfo.in IMaCh.icns main.scpt.in IMaCh-ecrandemarrage.rsrc TXT.rtf  #imachdmg : imachopt.o create-dmg applet IMaChInfo.plist.in IMaChPkgInfo.in IMaCh.icns main.scpt.in IMaCh-ecrandemarrage.rsrc TXT.rtf
 imachdmg : imachopt.o create-dmg applet IMaChInfo.plist.in IMaChPkgInfo.in IMaCh.icns main.scpt.in IMaCh-ecrandemarrage.rsrc TXT.rtf  #       $(CC) $(LFLAGSOPT) -o imach imachopt.o
         $(CC) $(LFLAGSOPT) -o imach imachopt.o  #       #hdiutil detach /Volumes/IMaCh\ $(VERSION)
         #hdiutil detach /Volumes/IMaCh\ $(VERSION)  #       cp ../../distributions/osx/gnuplot_bin/gnuplot_2_6_5_OSX imach$(VERSION).app/Contents/Resources/bin/gnuplot;\
         rm -rf imach$(VERSION).app  
         mkdir -p imach$(VERSION).app  imachdmg : imachopt.o ../distributions/osx/create-dmg ../distributions/osx/createdmg4.sh ../distributions/osx/IMaChInfo.plist.in ../distributions/osx/IMaChPkgInfo.in ../distributions/osx/IMaCh.icns  ../distributions/osx/TXT.rtf
         mkdir -p imach$(VERSION).app/Contents          pwd
         mkdir -p imach$(VERSION).app/Contents/MacOS          (cd ../build && rm -r osx && mkdir osx && cd osx ;\
         cp applet imach$(VERSION).app/Contents/MacOS          pwd ;\
         mkdir -p imach$(VERSION).app/Contents/Resources          cmake ../..;\
         mkdir -p imach$(VERSION).app/Contents/Resources/Scripts          cmake --build . ; \
         mkdir -p imach$(VERSION).app/Contents/Resources/bin          echo $(OSTYPE);\
         mkdir -p imach$(VERSION).app/Contents/Resources/html          rm -rf imach$(VERSION).app;\
         cp imach imach$(VERSION).app/Contents/Resources/bin          mkdir -p imach$(VERSION).app;\
         cp gnuplot_bin/gnuplot_2_6_5_OSX imach$(VERSION).app/Contents/Resources/bin/gnuplot          mkdir -p imach$(VERSION).app/Contents;\
         mkdir -p imach$(VERSION).app/Contents/Resources/description.rtfd          mkdir -p imach$(VERSION).app/Contents/MacOS;\
         cp -p TXT.rtf imach$(VERSION).app/Contents/Resources/description.rtfd          cp ../../distributions/osx/imach imach$(VERSION).app/Contents/MacOS;\
         $(SED) -e "s/@VERSION@/$(VERSION)/g;" \          mkdir -p imach$(VERSION).app/Contents/Resources;\
         IMaChInfo.plist.in  >imach$(VERSION).app/Contents/Info.plist          mkdir -p imach$(VERSION).app/Contents/Resources/Scripts;\
         cp -p IMaChPkgInfo.in  imach$(VERSION).app/Contents/PkgInfo          mkdir -p imach$(VERSION).app/Contents/Resources/bin;\
         cp -p IMaCh.icns  imach$(VERSION).app/Contents/Resources/applet.icns          mkdir -p imach$(VERSION).app/Contents/Resources/lib;\
         cp -r -p main.scpt.in imach$(VERSION).app/Contents/Resources/Scripts/main.scpt          mkdir -p imach$(VERSION).app/Contents/Resources/doc;\
         cp IMaCH-ecrandemarrage.rsrc imach$(VERSION).app/Contents/Resources/applet.rsrc          cp IMaCh-$(VERSION) imach$(VERSION).app/Contents/Resources/bin/imach;\
         cp ../html/doc/data1.txt  imach$(VERSION).app/Contents/Resources/html          cp ../../distributions/osx/gnuplot_bin/bin/gnuplot imach$(VERSION).app/Contents/Resources/bin/gnuplot;\
         cp ../html/doc/biaspar.log  imach$(VERSION).app/Contents/Resources/html          cp ../../distributions/osx/gnuplot_bin/lib/* imach$(VERSION).app/Contents/Resources/lib;\
         cp ../html/doc/biaspar.imach  imach$(VERSION).app/Contents/Resources/html          mkdir -p imach$(VERSION).app/Contents/Resources/description.rtfd;\
         rm -f imach$(VERSION).dmg          cp -p ../../distributions/osx/TXT.rtf imach$(VERSION).app/Contents/Resources/description.rtfd ;\
         ./createdmg3.sh --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION)          $(SED) -e "s/@VERSION@/$(VERSION)/g;" ../../distributions/osx/IMaChInfo.plist.in  >imach$(VERSION).app/Contents/Info.plist ;\
         mv  imach$(VERSION).dmg Output/          cp -p ../../distributions/osx/IMaChPkgInfo.in  imach$(VERSION).app/Contents/PkgInfo ;\
 #       ./create-dmg --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION).app          cp -p ../../distributions/osx/IMaCh.icns  imach$(VERSION).app/Contents/Resources/IMaCh.icns ;\
           cp ../../html/doc/data1.txt  imach$(VERSION).app/Contents/Resources/doc ;\
           cp ../../html/doc/biaspar.log  imach$(VERSION).app/Contents/Resources/doc ;\
           cp ../../html/doc/biaspar.imach  imach$(VERSION).app/Contents/Resources/doc ;\
           cp ../../src/README.txt  imach$(VERSION).app/Contents/Resources/doc ;\
           rm -f imach$(VERSION).dmg ;\
           pwd ;\
           cp ../../distributions/osx/createdmg4.sh . ;\
           cp ../../distributions/osx/Background.png .;\
           pwd ;\
           ./createdmg4.sh  --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION) ;\
           cp  imach$(VERSION).dmg ../../src/Output/ ;)
   #       ./create-dmg --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION).app 
 #       ./createdmg2.sh --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION)  #       ./createdmg2.sh --volname "IMaCh $(VERSION)" imach$(VERSION).dmg imach$(VERSION)
   
 upload:  md5:
         ls Output/* | xargs md5sum          ls Output/* | xargs md5sum
         rsync -v Output/* brouard@henry.ined.fr:/home/euroreves/html/imach/  upload:
   #       rsync -v Output/imach-0.98r4-1.x86_64.rpm brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/IMaCh-0.99a3-icl-setup.exe brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach0.99a3.dmg brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/IMaCh-0.98r7-icl-setup.exe brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach0.98r7.dmg brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach-0.99r9-icl-setup.exe brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach0.99r9.dmg brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach-0.99r19-icl-setup.exe brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach0.99r19.dmg brouard@henry.ined.fr:/home/euroreves/html/imach/Download
           rsync -v Output/imach-0.99r19-1.x86_64.rpm brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/imach0.99r12-1.x86_64.rpm brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   #       rsync -v Output/* brouard@henry.ined.fr:/home/euroreves/html/imach/Download
   
 imachcyg : imachcyg.o  imachcyg : imachcyg.o
         $(CC) $(LFLAGS) -o imach imachcyg.o          $(CC) $(LFLAGS) -o imach imachcyg.o
Line 472  imach.exe : imachw32.o Line 743  imach.exe : imachw32.o
         i386-mingw32-gcc  -mwindows -o imach.exe -lm imachw32.o          i386-mingw32-gcc  -mwindows -o imach.exe -lm imachw32.o
         i386-mingw32-strip imach.exe          i386-mingw32-strip imach.exe
   
   valgrindtoto: valgrindtoto.c
           gcc -o valgrindtoto -DCROSS=0 -g valgrindtoto.c
   valgrindtototest: valgrindtoto
           valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ./valgrindtoto
   
 valgrind-test :  imach $(TESTFILE)   valgrind-test :  imach $(TESTFILE) 
         valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ./imach $(TESTFILE)          valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ./imach $(TESTFILE)
   #       valgrind  --dsymutil=yes --leak-check=full --show-leak-kinds=all --track-origins=yes ./imach-0.98r-powellf1f3linmnb $(TESTFILE)
   # gdb -ex=r --args myprogram arg1 arg2
   # gdb -batch -x /tmp/cmds --args executablename arg1 arg2 arg3
   #  gdb -ex=r --args imachback /Users/nbrouard/Documents/Recherches/HRS/RAND_HRS/imachb.imach
   btest:  imachback $(TESTFILE) 
           gdb ./imachback $(TESTFILE)
 test:  imach $(TESTFILE)   test:  imach $(TESTFILE) 
         gdb ./imach $(TESTFILE)          gdb ./imach $(TESTFILE)
   
Removed from v.1.57  
changed lines
  Added in v.1.86

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