version 1.104, 2005/09/30 16:11:43
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version 1.105, 2006/01/05 20:23:19
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.105 2006/01/05 20:23:19 lievre |
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*** empty log message *** |
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Revision 1.104 2005/09/30 16:11:43 lievre |
Revision 1.104 2005/09/30 16:11:43 lievre |
(Module): sump fixed, loop imx fixed, and simplifications. |
(Module): sump fixed, loop imx fixed, and simplifications. |
(Module): If the status is missing at the last wave but we know |
(Module): If the status is missing at the last wave but we know |
Line 373 double *weight;
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Line 376 double *weight;
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int **s; /* Status */ |
int **s; /* Status */ |
double *agedc, **covar, idx; |
double *agedc, **covar, idx; |
int **nbcode, *Tcode, *Tvar, **codtab, **Tvard, *Tprod, cptcovprod, *Tvaraff; |
int **nbcode, *Tcode, *Tvar, **codtab, **Tvard, *Tprod, cptcovprod, *Tvaraff; |
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double *lsurv, *lpop, *tpop; |
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double ftol=FTOL; /* Tolerance for computing Max Likelihood */ |
double ftol=FTOL; /* Tolerance for computing Max Likelihood */ |
double ftolhess; /* Tolerance for computing hessian */ |
double ftolhess; /* Tolerance for computing hessian */ |
Line 1304 double func( double *x)
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Line 1308 double func( double *x)
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survp += out[s1][j]; |
survp += out[s1][j]; |
lli= survp; |
lli= survp; |
} |
} |
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else if (s2==-4) { |
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for (j=3,survp=0. ; j<=nlstate; j++) |
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survp += out[s1][j]; |
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lli= survp; |
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} |
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else if (s2==-5) { |
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for (j=1,survp=0. ; j<=2; j++) |
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survp += out[s1][j]; |
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lli= survp; |
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} |
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else{ |
else{ |
Line 1870 void lubksb(double **a, int n, int *indx
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Line 1886 void lubksb(double **a, int n, int *indx
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} |
} |
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/************ Frequencies ********************/ |
/************ Frequencies ********************/ |
void freqsummary(char fileres[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, int *Tvaraff, int **nbcode, int *ncodemax,double **mint,double **anint) |
void freqsummary(char fileres[], int iagemin, int iagemax, int **s, double **agev, int nlstate, int imx, int *Tvaraff, int **nbcode, int *ncodemax,double **mint,double **anint, char strstart[]) |
{ /* Some frequencies */ |
{ /* Some frequencies */ |
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int i, m, jk, k1,i1, j1, bool, z1,z2,j; |
int i, m, jk, k1,i1, j1, bool, z1,z2,j; |
Line 1890 void freqsummary(char fileres[], int ia
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Line 1906 void freqsummary(char fileres[], int ia
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fprintf(ficlog,"Problem with prevalence resultfile: %s\n", fileresp); |
fprintf(ficlog,"Problem with prevalence resultfile: %s\n", fileresp); |
exit(0); |
exit(0); |
} |
} |
freq= ma3x(-2,nlstate+ndeath,-2,nlstate+ndeath,iagemin,iagemax+3); |
freq= ma3x(-5,nlstate+ndeath,-5,nlstate+ndeath,iagemin,iagemax+3); |
j1=0; |
j1=0; |
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j=cptcoveff; |
j=cptcoveff; |
Line 1903 void freqsummary(char fileres[], int ia
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Line 1919 void freqsummary(char fileres[], int ia
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j1++; |
j1++; |
/*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]); |
/*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]); |
scanf("%d", i);*/ |
scanf("%d", i);*/ |
for (i=-2; i<=nlstate+ndeath; i++) |
for (i=-5; i<=nlstate+ndeath; i++) |
for (jk=-2; jk<=nlstate+ndeath; jk++) |
for (jk=-5; jk<=nlstate+ndeath; jk++) |
for(m=iagemin; m <= iagemax+3; m++) |
for(m=iagemin; m <= iagemax+3; m++) |
freq[i][jk][m]=0; |
freq[i][jk][m]=0; |
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Line 1943 void freqsummary(char fileres[], int ia
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Line 1959 void freqsummary(char fileres[], int ia
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} |
} |
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/* fprintf(ficresp, "#Count between %.lf/%.lf/%.lf and %.lf/%.lf/%.lf\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2);*/ |
/* fprintf(ficresp, "#Count between %.lf/%.lf/%.lf and %.lf/%.lf/%.lf\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2);*/ |
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fprintf(ficresp, "#Local time at start: %s", strstart); |
if (cptcovn>0) { |
if (cptcovn>0) { |
fprintf(ficresp, "\n#********** Variable "); |
fprintf(ficresp, "\n#********** Variable "); |
for (z1=1; z1<=cptcoveff; z1++) fprintf(ficresp, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]); |
for (z1=1; z1<=cptcoveff; z1++) fprintf(ficresp, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]); |
Line 2029 void freqsummary(char fileres[], int ia
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Line 2045 void freqsummary(char fileres[], int ia
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dateintmean=dateintsum/k2cpt; |
dateintmean=dateintsum/k2cpt; |
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fclose(ficresp); |
fclose(ficresp); |
free_ma3x(freq,-2,nlstate+ndeath,-2,nlstate+ndeath, iagemin, iagemax+3); |
free_ma3x(freq,-5,nlstate+ndeath,-5,nlstate+ndeath, iagemin, iagemax+3); |
free_vector(pp,1,nlstate); |
free_vector(pp,1,nlstate); |
free_matrix(prop,1,nlstate,iagemin, iagemax+3); |
free_matrix(prop,1,nlstate,iagemin, iagemax+3); |
/* End of Freq */ |
/* End of Freq */ |
Line 2138 void concatwav(int wav[], int **dh, int
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Line 2154 void concatwav(int wav[], int **dh, int
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mi=0; |
mi=0; |
m=firstpass; |
m=firstpass; |
while(s[m][i] <= nlstate){ |
while(s[m][i] <= nlstate){ |
if(s[m][i]>=1 || s[m][i]==-2) |
if(s[m][i]>=1 || s[m][i]==-2 || s[m][i]==-4 || s[m][i]==-5) |
mw[++mi][i]=m; |
mw[++mi][i]=m; |
if(m >=lastpass) |
if(m >=lastpass) |
break; |
break; |
Line 2178 void concatwav(int wav[], int **dh, int
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Line 2194 void concatwav(int wav[], int **dh, int
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nberr++; |
nberr++; |
printf("Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]); |
printf("Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]); |
j=1; /* Temporary Dangerous patch */ |
j=1; /* Temporary Dangerous patch */ |
printf(" We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview.\n You MUST fix the contradiction between dates.\n",stepm); |
printf(" We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview. You MUST fix the contradiction between dates.\n",stepm); |
fprintf(ficlog,"Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]); |
fprintf(ficlog,"Error! Negative delay (%d to death) between waves %d and %d of individual %ld at line %d who is aged %.1f with statuses from %d to %d\n ",j,mw[mi][i],mw[mi+1][i],num[i], i,agev[mw[mi][i]][i],s[mw[mi][i]][i] ,s[mw[mi+1][i]][i]); |
fprintf(ficlog," We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview.\n You MUST fix the contradiction between dates.\n",stepm); |
fprintf(ficlog," We assumed that the date of interview was correct (and not the date of death) and postponed the death %d month(s) (one stepm) after the interview. You MUST fix the contradiction between dates.\n",stepm); |
} |
} |
k=k+1; |
k=k+1; |
if (j >= jmax) jmax=j; |
if (j >= jmax) jmax=j; |
Line 2304 void tricode(int *Tvar, int **nbcode, in
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Line 2320 void tricode(int *Tvar, int **nbcode, in
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/*********** Health Expectancies ****************/ |
/*********** Health Expectancies ****************/ |
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void evsij(char fileres[], double ***eij, double x[], int nlstate, int stepm, int bage, int fage, double **oldm, double **savm, int ij, int estepm,double delti[],double **matcov ) |
void evsij(char fileres[], double ***eij, double x[], int nlstate, int stepm, int bage, int fage, double **oldm, double **savm, int ij, int estepm,double delti[],double **matcov,char strstart[] ) |
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{ |
{ |
/* Health expectancies */ |
/* Health expectancies */ |
Line 2322 void evsij(char fileres[], double ***eij
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Line 2338 void evsij(char fileres[], double ***eij
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dnewm=matrix(1,nlstate*nlstate,1,npar); |
dnewm=matrix(1,nlstate*nlstate,1,npar); |
doldm=matrix(1,nlstate*nlstate,1,nlstate*nlstate); |
doldm=matrix(1,nlstate*nlstate,1,nlstate*nlstate); |
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fprintf(ficreseij,"# Local time at start: %s", strstart); |
fprintf(ficreseij,"# Health expectancies\n"); |
fprintf(ficreseij,"# Health expectancies\n"); |
fprintf(ficreseij,"# Age"); |
fprintf(ficreseij,"# Age"); |
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
Line 2476 void evsij(char fileres[], double ***eij
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Line 2493 void evsij(char fileres[], double ***eij
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} |
} |
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/************ Variance ******************/ |
/************ Variance ******************/ |
void varevsij(char optionfilefiname[], double ***vareij, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **prlim, double ftolpl, int ij, int estepm, int cptcov, int cptcod, int popbased, int mobilav) |
void varevsij(char optionfilefiname[], double ***vareij, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **prlim, double ftolpl, int ij, int estepm, int cptcov, int cptcod, int popbased, int mobilav, char strstart[]) |
{ |
{ |
/* Variance of health expectancies */ |
/* Variance of health expectancies */ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double ** savm,double ftolpl);*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double ** savm,double ftolpl);*/ |
Line 2527 void varevsij(char optionfilefiname[], d
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Line 2544 void varevsij(char optionfilefiname[], d
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fprintf(ficlog,"Problem with resultfile: %s\n", fileresprobmorprev); |
fprintf(ficlog,"Problem with resultfile: %s\n", fileresprobmorprev); |
} |
} |
printf("Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
printf("Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
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fprintf(ficlog,"Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
fprintf(ficlog,"Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
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fprintf(ficresprobmorprev, "#Local time at start: %s", strstart); |
fprintf(ficresprobmorprev,"# probabilities of dying before estepm=%d months for people of exact age and weighted probabilities w1*p1j+w2*p2j+... stand dev in()\n",estepm); |
fprintf(ficresprobmorprev,"# probabilities of dying before estepm=%d months for people of exact age and weighted probabilities w1*p1j+w2*p2j+... stand dev in()\n",estepm); |
fprintf(ficresprobmorprev,"# Age cov=%-d",ij); |
fprintf(ficresprobmorprev,"# Age cov=%-d",ij); |
for(j=nlstate+1; j<=(nlstate+ndeath);j++){ |
for(j=nlstate+1; j<=(nlstate+ndeath);j++){ |
Line 2537 void varevsij(char optionfilefiname[], d
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Line 2556 void varevsij(char optionfilefiname[], d
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} |
} |
fprintf(ficresprobmorprev,"\n"); |
fprintf(ficresprobmorprev,"\n"); |
fprintf(ficgp,"\n# Routine varevsij"); |
fprintf(ficgp,"\n# Routine varevsij"); |
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fprintf(fichtm, "#Local time at start: %s", strstart); |
fprintf(fichtm,"\n<li><h4> Computing probabilities of dying over estepm months as a weighted average (i.e global mortality independent of initial healh state)</h4></li>\n"); |
fprintf(fichtm,"\n<li><h4> Computing probabilities of dying over estepm months as a weighted average (i.e global mortality independent of initial healh state)</h4></li>\n"); |
fprintf(fichtm,"\n<br>%s <br>\n",digitp); |
fprintf(fichtm,"\n<br>%s <br>\n",digitp); |
/* } */ |
/* } */ |
varppt = matrix(nlstate+1,nlstate+ndeath,nlstate+1,nlstate+ndeath); |
varppt = matrix(nlstate+1,nlstate+ndeath,nlstate+1,nlstate+ndeath); |
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fprintf(ficresvij, "#Local time at start: %s", strstart); |
fprintf(ficresvij,"# Variance and covariance of health expectancies e.j \n# (weighted average of eij where weights are the stable prevalence in health states i\n"); |
fprintf(ficresvij,"# Variance and covariance of health expectancies e.j \n# (weighted average of eij where weights are the stable prevalence in health states i\n"); |
fprintf(ficresvij,"# Age"); |
fprintf(ficresvij,"# Age"); |
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
Line 2774 void varevsij(char optionfilefiname[], d
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Line 2794 void varevsij(char optionfilefiname[], d
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} /* end varevsij */ |
} /* end varevsij */ |
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/************ Variance of prevlim ******************/ |
/************ Variance of prevlim ******************/ |
void varprevlim(char fileres[], double **varpl, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **prlim, double ftolpl, int ij) |
void varprevlim(char fileres[], double **varpl, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **prlim, double ftolpl, int ij, char strstart[]) |
{ |
{ |
/* Variance of prevalence limit */ |
/* Variance of prevalence limit */ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
Line 2787 void varprevlim(char fileres[], double *
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Line 2807 void varprevlim(char fileres[], double *
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double **gradg, **trgradg; |
double **gradg, **trgradg; |
double age,agelim; |
double age,agelim; |
int theta; |
int theta; |
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fprintf(ficresvpl, "#Local time at start: %s", strstart); |
fprintf(ficresvpl,"# Standard deviation of stable prevalences \n"); |
fprintf(ficresvpl,"# Standard deviation of stable prevalences \n"); |
fprintf(ficresvpl,"# Age"); |
fprintf(ficresvpl,"# Age"); |
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
Line 2857 void varprevlim(char fileres[], double *
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Line 2877 void varprevlim(char fileres[], double *
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} |
} |
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/************ Variance of one-step probabilities ******************/ |
/************ Variance of one-step probabilities ******************/ |
void varprob(char optionfilefiname[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij, int *Tvar, int **nbcode, int *ncodemax) |
void varprob(char optionfilefiname[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij, int *Tvar, int **nbcode, int *ncodemax, char strstart[]) |
{ |
{ |
int i, j=0, i1, k1, l1, t, tj; |
int i, j=0, i1, k1, l1, t, tj; |
int k2, l2, j1, z1; |
int k2, l2, j1, z1; |
Line 2902 void varprob(char optionfilefiname[], do
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Line 2922 void varprob(char optionfilefiname[], do
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fprintf(ficlog,"Computing matrix of variance covariance of one-step probabilities: result on file '%s' \n",fileresprobcov); |
fprintf(ficlog,"Computing matrix of variance covariance of one-step probabilities: result on file '%s' \n",fileresprobcov); |
printf("and correlation matrix of one-step probabilities: result on file '%s' \n",fileresprobcor); |
printf("and correlation matrix of one-step probabilities: result on file '%s' \n",fileresprobcor); |
fprintf(ficlog,"and correlation matrix of one-step probabilities: result on file '%s' \n",fileresprobcor); |
fprintf(ficlog,"and correlation matrix of one-step probabilities: result on file '%s' \n",fileresprobcor); |
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fprintf(ficresprob, "#Local time at start: %s", strstart); |
fprintf(ficresprob,"#One-step probabilities and stand. devi in ()\n"); |
fprintf(ficresprob,"#One-step probabilities and stand. devi in ()\n"); |
fprintf(ficresprob,"# Age"); |
fprintf(ficresprob,"# Age"); |
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fprintf(ficresprobcov, "#Local time at start: %s", strstart); |
fprintf(ficresprobcov,"#One-step probabilities and covariance matrix\n"); |
fprintf(ficresprobcov,"#One-step probabilities and covariance matrix\n"); |
fprintf(ficresprobcov,"# Age"); |
fprintf(ficresprobcov,"# Age"); |
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fprintf(ficresprobcor, "#Local time at start: %s", strstart); |
fprintf(ficresprobcor,"#One-step probabilities and correlation matrix\n"); |
fprintf(ficresprobcor,"#One-step probabilities and correlation matrix\n"); |
fprintf(ficresprobcov,"# Age"); |
fprintf(ficresprobcov,"# Age"); |
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Line 3975 double gompertz(double x[])
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Line 3997 double gompertz(double x[])
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/******************* Printing html file ***********/ |
/******************* Printing html file ***********/ |
void printinghtmlmort(char fileres[], char title[], char datafile[], int firstpass, \ |
void printinghtmlmort(char fileres[], char title[], char datafile[], int firstpass, \ |
int lastpass, int stepm, int weightopt, char model[],\ |
int lastpass, int stepm, int weightopt, char model[],\ |
int imx, double p[],double **matcov){ |
int imx, double p[],double **matcov,double agemortsup){ |
int i; |
int i,k; |
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fprintf(fichtm,"<ul><li><h4>Result files </h4>\n Force of mortality. Parameters of the Gompertz fit (with confidence interval in brackets):<br>"); |
fprintf(fichtm,"<ul><li><h4>Result files </h4>\n Force of mortality. Parameters of the Gompertz fit (with confidence interval in brackets):<br>"); |
fprintf(fichtm," mu(age) =%lf*exp(%lf*(age-%d)) per year<br><br>",p[1],p[2],agegomp); |
fprintf(fichtm," mu(age) =%lf*exp(%lf*(age-%d)) per year<br><br>",p[1],p[2],agegomp); |
Line 3984 void printinghtmlmort(char fileres[], ch
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Line 4006 void printinghtmlmort(char fileres[], ch
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fprintf(fichtm," p[%d] = %lf [%f ; %f]<br>\n",i,p[i],p[i]-2*sqrt(matcov[i][i]),p[i]+2*sqrt(matcov[i][i])); |
fprintf(fichtm," p[%d] = %lf [%f ; %f]<br>\n",i,p[i],p[i]-2*sqrt(matcov[i][i]),p[i]+2*sqrt(matcov[i][i])); |
fprintf(fichtm,"<br><br><img src=\"graphmort.png\">"); |
fprintf(fichtm,"<br><br><img src=\"graphmort.png\">"); |
fprintf(fichtm,"</ul>"); |
fprintf(fichtm,"</ul>"); |
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fprintf(fichtm,"<ul><li><h4>Life table</h4>\n <br>"); |
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fprintf(fichtm,"\nAge lx qx dx Lx Tx e(x)<br>"); |
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for (k=agegomp;k<(agemortsup-2);k++) |
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fprintf(fichtm,"%d %.0lf %lf %.0lf %.0lf %.0lf %lf<br>\n",k,lsurv[k],p[1]*exp(p[2]*(k-agegomp)),(p[1]*exp(p[2]*(k-agegomp)))*lsurv[k],lpop[k],tpop[k],tpop[k]/lsurv[k]); |
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fflush(fichtm); |
fflush(fichtm); |
} |
} |
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Line 4051 int main(int argc, char *argv[])
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Line 4082 int main(int argc, char *argv[])
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int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ |
int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ |
int mobilav=0,popforecast=0; |
int mobilav=0,popforecast=0; |
int hstepm, nhstepm; |
int hstepm, nhstepm; |
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int agemortsup; |
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float sumlpop=0.; |
double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; |
double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; |
double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; |
double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; |
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Line 4589 int main(int argc, char *argv[])
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Line 4622 int main(int argc, char *argv[])
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for (i=1; i<=imx; i++) { |
for (i=1; i<=imx; i++) { |
agedc[i]=(moisdc[i]/12.+andc[i])-(moisnais[i]/12.+annais[i]); |
agedc[i]=(moisdc[i]/12.+andc[i])-(moisnais[i]/12.+annais[i]); |
for(m=firstpass; (m<= lastpass); m++){ |
for(m=firstpass; (m<= lastpass); m++){ |
if(s[m][i] >0 || s[m][i]==-2){ |
if(s[m][i] >0 || s[m][i]==-2 || s[m][i]==-4 || s[m][i]==-5){ |
if (s[m][i] >= nlstate+1) { |
if (s[m][i] >= nlstate+1) { |
if(agedc[i]>0) |
if(agedc[i]>0) |
if((int)moisdc[i]!=99 && (int)andc[i]!=9999) |
if((int)moisdc[i]!=99 && (int)andc[i]!=9999) |
Line 4763 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 4796 Title=%s <br>Datafile=%s Firstpass=%d La
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/* Calculates basic frequencies. Computes observed prevalence at single age |
/* Calculates basic frequencies. Computes observed prevalence at single age |
and prints on file fileres'p'. */ |
and prints on file fileres'p'. */ |
freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint); |
freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvaraff,nbcode, ncodemax,mint,anint,strstart); |
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fprintf(fichtm,"\n"); |
fprintf(fichtm,"\n"); |
fprintf(fichtm,"<br>Total number of observations=%d <br>\n\ |
fprintf(fichtm,"<br>Total number of observations=%d <br>\n\ |
Line 4855 Interval (in months) between two waves:
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Line 4888 Interval (in months) between two waves:
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printf("iter=%d MLE=%f Eq=%lf*exp(%lf*(age-%d))\n",iter,-gompertz(p),p[1],p[2],agegomp); |
printf("iter=%d MLE=%f Eq=%lf*exp(%lf*(age-%d))\n",iter,-gompertz(p),p[1],p[2],agegomp); |
for (i=1;i<=NDIM;i++) |
for (i=1;i<=NDIM;i++) |
printf("%f [%f ; %f]\n",p[i],p[i]-2*sqrt(matcov[i][i]),p[i]+2*sqrt(matcov[i][i])); |
printf("%f [%f ; %f]\n",p[i],p[i]-2*sqrt(matcov[i][i]),p[i]+2*sqrt(matcov[i][i])); |
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lsurv=vector(1,AGESUP); |
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lpop=vector(1,AGESUP); |
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tpop=vector(1,AGESUP); |
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lsurv[agegomp]=100000; |
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for (k=agegomp;k<=AGESUP;k++) { |
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agemortsup=k; |
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if (p[1]*exp(p[2]*(k-agegomp))>1) break; |
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} |
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for (k=agegomp;k<agemortsup;k++) |
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lsurv[k+1]=lsurv[k]-lsurv[k]*(p[1]*exp(p[2]*(k-agegomp))); |
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for (k=agegomp;k<agemortsup;k++){ |
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lpop[k]=(lsurv[k]+lsurv[k+1])/2.; |
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sumlpop=sumlpop+lpop[k]; |
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} |
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tpop[agegomp]=sumlpop; |
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for (k=agegomp;k<(agemortsup-3);k++){ |
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/* tpop[k+1]=2;*/ |
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tpop[k+1]=tpop[k]-lpop[k]; |
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} |
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printf("\nAge lx qx dx Lx Tx e(x)\n"); |
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for (k=agegomp;k<(agemortsup-2);k++) |
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printf("%d %.0lf %lf %.0lf %.0lf %.0lf %lf\n",k,lsurv[k],p[1]*exp(p[2]*(k-agegomp)),(p[1]*exp(p[2]*(k-agegomp)))*lsurv[k],lpop[k],tpop[k],tpop[k]/lsurv[k]); |
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replace_back_to_slash(pathc,path); /* Even gnuplot wants a / */ |
replace_back_to_slash(pathc,path); /* Even gnuplot wants a / */ |
printinggnuplotmort(fileres, optionfilefiname,ageminpar,agemaxpar,fage, pathc,p); |
printinggnuplotmort(fileres, optionfilefiname,ageminpar,agemaxpar,fage, pathc,p); |
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printinghtmlmort(fileres,title,datafile, firstpass, lastpass, \ |
printinghtmlmort(fileres,title,datafile, firstpass, lastpass, \ |
stepm, weightopt,\ |
stepm, weightopt,\ |
model,imx,p,matcov); |
model,imx,p,matcov,agemortsup); |
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free_vector(lsurv,1,AGESUP); |
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free_vector(lpop,1,AGESUP); |
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free_vector(tpop,1,AGESUP); |
} /* Endof if mle==-3 */ |
} /* Endof if mle==-3 */ |
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else{ /* For mle >=1 */ |
else{ /* For mle >=1 */ |
Line 5120 Interval (in months) between two waves:
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Line 5188 Interval (in months) between two waves:
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} |
} |
printf("Computing stable prevalence: result on file '%s' \n", filerespl); |
printf("Computing stable prevalence: result on file '%s' \n", filerespl); |
fprintf(ficlog,"Computing stable prevalence: result on file '%s' \n", filerespl); |
fprintf(ficlog,"Computing stable prevalence: result on file '%s' \n", filerespl); |
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fprintf(ficrespl, "#Local time at start: %s", strstart); |
fprintf(ficrespl,"#Stable prevalence \n"); |
fprintf(ficrespl,"#Stable prevalence \n"); |
fprintf(ficrespl,"#Age "); |
fprintf(ficrespl,"#Age "); |
for(i=1; i<=nlstate;i++) fprintf(ficrespl,"%d-%d ",i,i); |
for(i=1; i<=nlstate;i++) fprintf(ficrespl,"%d-%d ",i,i); |
Line 5180 Interval (in months) between two waves:
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Line 5249 Interval (in months) between two waves:
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hstepm=hstepm/stepm; /* Typically 2 years, = 2/6 months = 4 */ |
hstepm=hstepm/stepm; /* Typically 2 years, = 2/6 months = 4 */ |
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/* hstepm=1; aff par mois*/ |
/* hstepm=1; aff par mois*/ |
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fprintf(ficrespij, "#Local time at start: %s", strstart); |
fprintf(ficrespij,"#****** h Pij x Probability to be in state j at age x+h being in i at x "); |
fprintf(ficrespij,"#****** h Pij x Probability to be in state j at age x+h being in i at x "); |
for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
Line 5217 Interval (in months) between two waves:
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Line 5286 Interval (in months) between two waves:
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} |
} |
} |
} |
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varprob(optionfilefiname, matcov, p, delti, nlstate, bage, fage,k,Tvar,nbcode, ncodemax); |
varprob(optionfilefiname, matcov, p, delti, nlstate, bage, fage,k,Tvar,nbcode, ncodemax,strstart); |
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fclose(ficrespij); |
fclose(ficrespij); |
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Line 5306 Interval (in months) between two waves:
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Line 5375 Interval (in months) between two waves:
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eij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
eij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
oldm=oldms;savm=savms; |
oldm=oldms;savm=savms; |
evsij(fileres, eij, p, nlstate, stepm, (int) bage, (int)fage, oldm, savm, k, estepm, delti, matcov); |
evsij(fileres, eij, p, nlstate, stepm, (int) bage, (int)fage, oldm, savm, k, estepm, delti, matcov, strstart); |
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vareij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
vareij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
oldm=oldms;savm=savms; |
oldm=oldms;savm=savms; |
varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k, estepm, cptcov,cptcod,0, mobilav); |
varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k, estepm, cptcov,cptcod,0, mobilav, strstart); |
if(popbased==1){ |
if(popbased==1){ |
varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k, estepm, cptcov,cptcod,popbased,mobilav); |
varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k, estepm, cptcov,cptcod,popbased,mobilav, strstart); |
} |
} |
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fprintf(ficrest, "#Local time at start: %s", strstart); |
fprintf(ficrest,"#Total LEs with variances: e.. (std) "); |
fprintf(ficrest,"#Total LEs with variances: e.. (std) "); |
for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i); |
for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i); |
fprintf(ficrest,"\n"); |
fprintf(ficrest,"\n"); |
Line 5388 Interval (in months) between two waves:
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Line 5457 Interval (in months) between two waves:
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varpl=matrix(1,nlstate,(int) bage, (int) fage); |
varpl=matrix(1,nlstate,(int) bage, (int) fage); |
oldm=oldms;savm=savms; |
oldm=oldms;savm=savms; |
varprevlim(fileres, varpl, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k); |
varprevlim(fileres, varpl, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl,k,strstart); |
free_matrix(varpl,1,nlstate,(int) bage, (int)fage); |
free_matrix(varpl,1,nlstate,(int) bage, (int)fage); |
} |
} |
} |
} |
Line 5437 Interval (in months) between two waves:
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Line 5506 Interval (in months) between two waves:
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tm = *localtime(&end_time.tv_sec); |
tm = *localtime(&end_time.tv_sec); |
tmg = *gmtime(&end_time.tv_sec); |
tmg = *gmtime(&end_time.tv_sec); |
strcpy(strtend,asctime(&tm)); |
strcpy(strtend,asctime(&tm)); |
printf("Local time at start %s\nLocaltime at end %s",strstart, strtend); |
printf("Local time at start %s\nLocal time at end %s",strstart, strtend); |
fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend); |
fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend); |
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
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