version 1.237, 2016/08/26 09:20:19
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version 1.238, 2016/08/26 14:23:35
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.238 2016/08/26 14:23:35 brouard |
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Summary: Starting tests of 0.99 |
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Revision 1.237 2016/08/26 09:20:19 brouard |
Revision 1.237 2016/08/26 09:20:19 brouard |
Summary: to valgrind |
Summary: to valgrind |
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Line 1145 double *Tvalsel; /**< Selected modality
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Line 1148 double *Tvalsel; /**< Selected modality
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int *Typevar; /**< 0 for simple covariate (dummy, quantitative, fixed or varying), 1 for age product, 2 for product */ |
int *Typevar; /**< 0 for simple covariate (dummy, quantitative, fixed or varying), 1 for age product, 2 for product */ |
int *Fixed; /** Fixed[k] 0=fixed, 1 varying, 2 fixed with age product, 3 varying with age product */ |
int *Fixed; /** Fixed[k] 0=fixed, 1 varying, 2 fixed with age product, 3 varying with age product */ |
int *Dummy; /** Dummy[k] 0=dummy (0 1), 1 quantitative (single or product without age), 2 dummy with age product, 3 quant with age product */ |
int *Dummy; /** Dummy[k] 0=dummy (0 1), 1 quantitative (single or product without age), 2 dummy with age product, 3 quant with age product */ |
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int *DummyV; /** Dummy[v] 0=dummy (0 1), 1 quantitative */ |
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int *FixedV; /** FixedV[v] 0 fixed, 1 varying */ |
int *Tage; |
int *Tage; |
int anyvaryingduminmodel=0; /**< Any varying dummy in Model=1 yes, 0 no, to avoid a loop on waves in freq */ |
int anyvaryingduminmodel=0; /**< Any varying dummy in Model=1 yes, 0 no, to avoid a loop on waves in freq */ |
int *Tmodelind; /** Tmodelind[Tvaraff[3]]=9 for V1 position,Tvaraff[1]@9={4, 3, 1, 0, 0, 0, 0, 0, 0}, model=V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1*/ |
int *Tmodelind; /** Tmodelind[Tvaraff[3]]=9 for V1 position,Tvaraff[1]@9={4, 3, 1, 0, 0, 0, 0, 0, 0}, model=V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1*/ |
Line 1154 int *Ndum; /** Freq of modality (tricode
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Line 1159 int *Ndum; /** Freq of modality (tricode
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/* int **codtab;*/ /**< codtab=imatrix(1,100,1,10); */ |
/* int **codtab;*/ /**< codtab=imatrix(1,100,1,10); */ |
int **Tvard; |
int **Tvard; |
int *Tprod;/**< Gives the k position of the k1 product */ |
int *Tprod;/**< Gives the k position of the k1 product */ |
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/* Tprod[k1=1]=3(=V1*V4) for V2+V1+V1*V4+age*V3 */ |
int *Tposprod; /**< Gives the k1 product from the k position */ |
int *Tposprod; /**< Gives the k1 product from the k position */ |
/* Tprod[k1=1]=3(=V1*V4) for V2+V1+V1*V4+age*V3 |
/* if V2+V1+V1*V4+age*V3+V3*V2 TProd[k1=2]=5 (V3*V2) */ |
if V2+V1+V1*V4+age*V3+V3*V2 TProd[k1=2]=5 (V3*V2) |
/* Tposprod[k]=k1 , Tposprod[3]=1, Tposprod[5(V3*V2)]=2 (2nd product without age) */ |
Tposprod[k]=k1 , Tposprod[3]=1, Tposprod[5]=2 |
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*/ |
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int cptcovprod, *Tvaraff, *invalidvarcomb; |
int cptcovprod, *Tvaraff, *invalidvarcomb; |
double *lsurv, *lpop, *tpop; |
double *lsurv, *lpop, *tpop; |
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Line 4918 void concatwav(int wav[], int **dh, int
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Line 4922 void concatwav(int wav[], int **dh, int
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double ***p3mat; |
double ***p3mat; |
double eip; |
double eip; |
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pstamp(ficreseij); |
/* pstamp(ficreseij); */ |
fprintf(ficreseij,"# (a) Life expectancies by health status at initial age and (b) health expectancies by health status at initial age\n"); |
fprintf(ficreseij,"# (a) Life expectancies by health status at initial age and (b) health expectancies by health status at initial age\n"); |
fprintf(ficreseij,"# Age"); |
fprintf(ficreseij,"# Age"); |
for(i=1; i<=nlstate;i++){ |
for(i=1; i<=nlstate;i++){ |
Line 5283 void concatwav(int wav[], int **dh, int
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Line 5287 void concatwav(int wav[], int **dh, int
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fprintf(ficlog,"Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
fprintf(ficlog,"Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
pstamp(ficresprobmorprev); |
pstamp(ficresprobmorprev); |
fprintf(ficresprobmorprev,"# probabilities of dying before estepm=%d months for people of exact age and weighted probabilities w1*p1j+w2*p2j+... stand dev in()\n",estepm); |
fprintf(ficresprobmorprev,"# probabilities of dying before estepm=%d months for people of exact age and weighted probabilities w1*p1j+w2*p2j+... stand dev in()\n",estepm); |
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fprintf(ficresprobmorprev,"# Selected quantitative variables and dummies"); |
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for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
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fprintf(ficresprobmorprev," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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} |
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for(j=1;j<=cptcoveff;j++) |
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fprintf(ficresprobmorprev,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(ij,j)]); |
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fprintf(ficresprobmorprev,"\n"); |
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fprintf(ficresprobmorprev,"# Age cov=%-d",ij); |
fprintf(ficresprobmorprev,"# Age cov=%-d",ij); |
for(j=nlstate+1; j<=(nlstate+ndeath);j++){ |
for(j=nlstate+1; j<=(nlstate+ndeath);j++){ |
fprintf(ficresprobmorprev," p.%-d SE",j); |
fprintf(ficresprobmorprev," p.%-d SE",j); |
Line 6270 void printinggnuplot(char fileresu[], ch
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Line 6282 void printinggnuplot(char fileresu[], ch
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strcpy(dirfileres,optionfilefiname); |
strcpy(dirfileres,optionfilefiname); |
strcpy(optfileres,"vpl"); |
strcpy(optfileres,"vpl"); |
/* 1eme*/ |
/* 1eme*/ |
for (cpt=1; cpt<= nlstate ; cpt ++) { /* For each live state */ |
for (cpt=1; cpt<= nlstate ; cpt ++){ /* For each live state */ |
for (k1=1; k1<= m ; k1 ++) /* For each valid combination of covariate */ |
for (k1=1; k1<= m ; k1 ++){ /* For each valid combination of covariate */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
/* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
/* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
if(TKresult[nres]!= k1) |
if(TKresult[nres]!= k1) |
continue; |
continue; |
/* We are interested in selected combination by the resultline */ |
/* We are interested in selected combination by the resultline */ |
printf("\n# 1st: Period (stable) prevalence with CI: 'VPL_' files and live state =%d ", cpt); |
printf("\n# 1st: Period (stable) prevalence with CI: 'VPL_' files and live state =%d ", cpt); |
fprintf(ficgp,"\n# 1st: Period (stable) prevalence with CI: 'VPL_' files and live state =%d ", cpt); |
fprintf(ficgp,"\n# 1st: Period (stable) prevalence with CI: 'VPL_' files and live state =%d ", cpt); |
for (k=1; k<=cptcoveff; k++){ /* For each covariate k get corresponding value lv for combination k1 */ |
for (k=1; k<=cptcoveff; k++){ /* For each covariate k get corresponding value lv for combination k1 */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the value of the covariate corresponding to k1 combination */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the value of the covariate corresponding to k1 combination */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
vlv= nbcode[Tvaraff[k]][lv]; /* vlv is the value of the covariate lv, 0 or 1 */ |
vlv= nbcode[Tvaraff[k]][lv]; /* vlv is the value of the covariate lv, 0 or 1 */ |
/* For each combination of covariate k1 (V1=1, V3=0), we printed the current covariate k and its value vlv */ |
/* For each combination of covariate k1 (V1=1, V3=0), we printed the current covariate k and its value vlv */ |
printf(" V%d=%d ",Tvaraff[k],vlv); |
printf(" V%d=%d ",Tvaraff[k],vlv); |
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
} |
} |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
} |
} |
printf("\n#\n"); |
printf("\n#\n"); |
fprintf(ficgp,"\n#\n"); |
fprintf(ficgp,"\n#\n"); |
if(invalidvarcomb[k1]){ |
if(invalidvarcomb[k1]){ |
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
continue; |
continue; |
} |
} |
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fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"V_"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"V_"),cpt,k1); |
fprintf(ficgp,"\n#set out \"V_%s_%d-%d.svg\" \n",optionfilefiname,cpt,k1); |
fprintf(ficgp,"\n#set out \"V_%s_%d-%d.svg\" \n",optionfilefiname,cpt,k1); |
fprintf(ficgp,"set xlabel \"Age\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \n\ |
set ylabel \"Probability\" \n \ |
set ylabel \"Probability\" \n \ |
set ter svg size 640, 480\n \ |
set ter svg size 640, 480\n \ |
plot [%.f:%.f] \"%s\" every :::%d::%d u 1:2 \"%%lf",ageminpar,fage,subdirf2(fileresu,"VPL_"),k1-1,k1-1); |
plot [%.f:%.f] \"%s\" every :::%d::%d u 1:2 \"%%lf",ageminpar,fage,subdirf2(fileresu,"VPL_"),k1-1,k1-1); |
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for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"%%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1); |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"%%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1); |
for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"%%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1); |
fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"%%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1); |
for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
if (i==cpt) fprintf(ficgp," %%lf (%%lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
else fprintf(ficgp," %%*lf (%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"\" w l lt 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence\" w l lt 2",subdirf2(fileresu,"P_"),k1-1,k1-1,2+4*(cpt-1)); |
fprintf(ficgp,"\" t\"\" w l lt 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence\" w l lt 2",subdirf2(fileresu,"P_"),k1-1,k1-1,2+4*(cpt-1)); |
if(backcast==1){ /* We need to get the corresponding values of the covariates involved in this combination k1 */ |
if(backcast==1){ /* We need to get the corresponding values of the covariates involved in this combination k1 */ |
/* fprintf(ficgp,",\"%s\" every :::%d::%d u 1:($%d) t\"Backward stable prevalence\" w l lt 3",subdirf2(fileresu,"PLB_"),k1-1,k1-1,1+cpt); */ |
/* fprintf(ficgp,",\"%s\" every :::%d::%d u 1:($%d) t\"Backward stable prevalence\" w l lt 3",subdirf2(fileresu,"PLB_"),k1-1,k1-1,1+cpt); */ |
fprintf(ficgp,",\"%s\" u 1:((",subdirf2(fileresu,"PLB_")); /* Age is in 1 */ |
fprintf(ficgp,",\"%s\" u 1:((",subdirf2(fileresu,"PLB_")); /* Age is in 1 */ |
if(cptcoveff ==0){ |
if(cptcoveff ==0){ |
fprintf(ficgp,"$%d)) t 'Backward prevalence in state %d' with line ", 2+(cpt-1), cpt ); |
fprintf(ficgp,"$%d)) t 'Backward prevalence in state %d' with line ", 2+(cpt-1), cpt ); |
}else{ |
}else{ |
kl=0; |
kl=0; |
for (k=1; k<=cptcoveff; k++){ /* For each combination of covariate */ |
for (k=1; k<=cptcoveff; k++){ /* For each combination of covariate */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate value corresponding to k1 combination and kth covariate */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate value corresponding to k1 combination and kth covariate */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
vlv= nbcode[Tvaraff[k]][lv]; |
vlv= nbcode[Tvaraff[k]][lv]; |
kl++; |
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/* kl=6+(cpt-1)*(nlstate+1)+1+(i-1); /\* 6+(1-1)*(2+1)+1+(1-1)=7, 6+(2-1)(2+1)+1+(1-1)=10 *\/ */ |
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/*6+(cpt-1)*(nlstate+1)+1+(i-1)+(nlstate+1)*nlstate; 6+(1-1)*(2+1)+1+(1-1) +(2+1)*2=13 */ |
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/*6+1+(i-1)+(nlstate+1)*nlstate; 6+1+(1-1) +(2+1)*2=13 */ |
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/* '' u 6:(($1==1 && $2==0 && $3==2 && $4==0)? $9/(1.-$15) : 1/0):($5==2000? 3:2) t 'p.1' with line lc variable*/ |
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if(k==cptcoveff){ |
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fprintf(ficgp,"$%d==%d && $%d==%d)? $%d : 1/0) t 'Backward prevalence in state %d' ",kl+1, Tvaraff[k],kl+1+1,nbcode[Tvaraff[k]][lv], \ |
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4+(cpt-1), cpt ); /* 4 or 6 ?*/ |
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}else{ |
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fprintf(ficgp,"$%d==%d && $%d==%d && ",kl+1, Tvaraff[k],kl+1+1,nbcode[Tvaraff[k]][lv]); |
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kl++; |
kl++; |
} |
/* kl=6+(cpt-1)*(nlstate+1)+1+(i-1); /\* 6+(1-1)*(2+1)+1+(1-1)=7, 6+(2-1)(2+1)+1+(1-1)=10 *\/ */ |
} /* end covariate */ |
/*6+(cpt-1)*(nlstate+1)+1+(i-1)+(nlstate+1)*nlstate; 6+(1-1)*(2+1)+1+(1-1) +(2+1)*2=13 */ |
} /* end if no covariate */ |
/*6+1+(i-1)+(nlstate+1)*nlstate; 6+1+(1-1) +(2+1)*2=13 */ |
} /* end if backcast */ |
/* '' u 6:(($1==1 && $2==0 && $3==2 && $4==0)? $9/(1.-$15) : 1/0):($5==2000? 3:2) t 'p.1' with line lc variable*/ |
fprintf(ficgp,"\nset out \n"); |
if(k==cptcoveff){ |
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fprintf(ficgp,"$%d==%d && $%d==%d)? $%d : 1/0) t 'Backward prevalence in state %d' ",kl+1, Tvaraff[k],kl+1+1,nbcode[Tvaraff[k]][lv], \ |
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4+(cpt-1), cpt ); /* 4 or 6 ?*/ |
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}else{ |
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fprintf(ficgp,"$%d==%d && $%d==%d && ",kl+1, Tvaraff[k],kl+1+1,nbcode[Tvaraff[k]][lv]); |
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kl++; |
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} |
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} /* end covariate */ |
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} /* end if no covariate */ |
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} /* end if backcast */ |
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fprintf(ficgp,"\nset out \n"); |
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} /* nres */ |
} /* k1 */ |
} /* k1 */ |
} /* cpt */ |
} /* cpt */ |
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/*2 eme*/ |
/*2 eme*/ |
for (k1=1; k1<= m ; k1 ++) |
for (k1=1; k1<= m ; k1 ++){ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
if(TKresult[nres]!= k1) |
if(TKresult[nres]!= k1) |
continue; |
continue; |
fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files "); |
fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files "); |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
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/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
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/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
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/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
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vlv= nbcode[Tvaraff[k]][lv]; |
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fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
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} |
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for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
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printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
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fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
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} |
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fprintf(ficgp,"\n#\n"); |
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if(invalidvarcomb[k1]){ |
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fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
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continue; |
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} |
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fprintf(ficgp,"\nset out \"%s_%d.svg\" \n",subdirf2(optionfilefiname,"E_"),k1); |
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for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ |
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if(vpopbased==0) |
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fprintf(ficgp,"set ylabel \"Years\" \nset ter svg size 640, 480\nplot [%.f:%.f] ",ageminpar,fage); |
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else |
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fprintf(ficgp,"\nreplot "); |
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for (i=1; i<= nlstate+1 ; i ++) { |
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k=2*i; |
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fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ?$4 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1, vpopbased); |
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for (j=1; j<= nlstate+1 ; j ++) { |
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if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
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else fprintf(ficgp," %%*lf (%%*lf)"); |
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} |
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if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l lt %d, \\\n",i); |
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else fprintf(ficgp,"\" t\"LE in state (%d)\" w l lt %d, \\\n",i-1,i+1); |
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fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4-$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased); |
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for (j=1; j<= nlstate+1 ; j ++) { |
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if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
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else fprintf(ficgp," %%*lf (%%*lf)"); |
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} |
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fprintf(ficgp,"\" t\"\" w l lt 0,"); |
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fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4+$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased); |
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for (j=1; j<= nlstate+1 ; j ++) { |
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if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
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else fprintf(ficgp," %%*lf (%%*lf)"); |
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} |
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if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 0"); |
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else fprintf(ficgp,"\" t\"\" w l lt 0,\\\n"); |
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} /* state */ |
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} /* vpopbased */ |
|
fprintf(ficgp,"\nset out;set out \"%s_%d.svg\"; replot; set out; \n",subdirf2(optionfilefiname,"E_"),k1); /* Buggy gnuplot */ |
|
} /* k1 end 2 eme*/ |
|
|
|
|
|
/*3eme*/ |
|
for (k1=1; k1<= m ; k1 ++) |
|
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
|
if(TKresult[nres]!= k) |
|
continue; |
|
|
|
for (cpt=1; cpt<= nlstate ; cpt ++) { |
|
fprintf(ficgp,"\n# 3d: Life expectancy with EXP_ files: combination=%d state=%d",k1, cpt); |
|
for (k=1; k<=cptcoveff; k++){ /* For each covariate dummy combination and each value */ |
|
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
Line 6431 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
Line 6384 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
} |
} |
/* for(k=1; k <= ncovds; k++){ */ |
/* for(k=1; k <= ncovds; k++){ */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
|
printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
} |
} |
fprintf(ficgp,"\n#\n"); |
fprintf(ficgp,"\n#\n"); |
if(invalidvarcomb[k1]){ |
if(invalidvarcomb[k1]){ |
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
continue; |
continue; |
} |
} |
|
|
/* k=2+nlstate*(2*cpt-2); */ |
fprintf(ficgp,"\nset out \"%s_%d.svg\" \n",subdirf2(optionfilefiname,"E_"),k1); |
k=2+(nlstate+1)*(cpt-1); |
for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ |
fprintf(ficgp,"\nset out \"%s_%d%d.svg\" \n",subdirf2(optionfilefiname,"EXP_"),cpt,k1); |
if(vpopbased==0) |
fprintf(ficgp,"set ter svg size 640, 480\n\ |
fprintf(ficgp,"set ylabel \"Years\" \nset ter svg size 640, 480\nplot [%.f:%.f] ",ageminpar,fage); |
|
else |
|
fprintf(ficgp,"\nreplot "); |
|
for (i=1; i<= nlstate+1 ; i ++) { |
|
k=2*i; |
|
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ?$4 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1, vpopbased); |
|
for (j=1; j<= nlstate+1 ; j ++) { |
|
if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
|
else fprintf(ficgp," %%*lf (%%*lf)"); |
|
} |
|
if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l lt %d, \\\n",i); |
|
else fprintf(ficgp,"\" t\"LE in state (%d)\" w l lt %d, \\\n",i-1,i+1); |
|
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4-$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased); |
|
for (j=1; j<= nlstate+1 ; j ++) { |
|
if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
|
else fprintf(ficgp," %%*lf (%%*lf)"); |
|
} |
|
fprintf(ficgp,"\" t\"\" w l lt 0,"); |
|
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4+$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased); |
|
for (j=1; j<= nlstate+1 ; j ++) { |
|
if (j==i) fprintf(ficgp," %%lf (%%lf)"); |
|
else fprintf(ficgp," %%*lf (%%*lf)"); |
|
} |
|
if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 0"); |
|
else fprintf(ficgp,"\" t\"\" w l lt 0,\\\n"); |
|
} /* state */ |
|
} /* vpopbased */ |
|
fprintf(ficgp,"\nset out;set out \"%s_%d.svg\"; replot; set out; \n",subdirf2(optionfilefiname,"E_"),k1); /* Buggy gnuplot */ |
|
} /* end nres */ |
|
} /* k1 end 2 eme*/ |
|
|
|
|
|
/*3eme*/ |
|
for (k1=1; k1<= m ; k1 ++){ |
|
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
|
if(TKresult[nres]!= k) |
|
continue; |
|
|
|
for (cpt=1; cpt<= nlstate ; cpt ++) { |
|
fprintf(ficgp,"\n# 3d: Life expectancy with EXP_ files: combination=%d state=%d",k1, cpt); |
|
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
|
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
|
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
|
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
|
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
|
vlv= nbcode[Tvaraff[k]][lv]; |
|
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
|
} |
|
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
|
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
|
} |
|
fprintf(ficgp,"\n#\n"); |
|
if(invalidvarcomb[k1]){ |
|
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
|
continue; |
|
} |
|
|
|
/* k=2+nlstate*(2*cpt-2); */ |
|
k=2+(nlstate+1)*(cpt-1); |
|
fprintf(ficgp,"\nset out \"%s_%d%d.svg\" \n",subdirf2(optionfilefiname,"EXP_"),cpt,k1); |
|
fprintf(ficgp,"set ter svg size 640, 480\n\ |
plot [%.f:%.f] \"%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",ageminpar,fage,subdirf2(fileresu,"E_"),k1-1,k1-1,k,cpt); |
plot [%.f:%.f] \"%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",ageminpar,fage,subdirf2(fileresu,"E_"),k1-1,k1-1,k,cpt); |
/*fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d-2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1); |
/*fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d-2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1); |
for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) "); |
for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) "); |
fprintf(ficgp,"\" t \"e%d1\" w l",cpt); |
fprintf(ficgp,"\" t \"e%d1\" w l",cpt); |
fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d+2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1); |
fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d+2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1); |
for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) "); |
for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) "); |
fprintf(ficgp,"\" t \"e%d1\" w l",cpt); |
fprintf(ficgp,"\" t \"e%d1\" w l",cpt); |
|
|
*/ |
*/ |
for (i=1; i< nlstate ; i ++) { |
for (i=1; i< nlstate ; i ++) { |
fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+i,cpt,i+1); |
fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+i,cpt,i+1); |
/* fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+2*i,cpt,i+1);*/ |
/* fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+2*i,cpt,i+1);*/ |
|
|
} |
} |
fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d.\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+nlstate,cpt); |
fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d.\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+nlstate,cpt); |
} |
} |
} |
} /* end nres */ |
|
} /* end kl 3eme */ |
|
|
/* 4eme */ |
/* 4eme */ |
/* Survival functions (period) from state i in state j by initial state i */ |
/* Survival functions (period) from state i in state j by initial state i */ |
for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
for (k1=1; k1<=m; k1++){ /* For each covariate and each value */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
if(TKresult[nres]!= k1) |
if(TKresult[nres]!= k1) |
continue; |
|
|
|
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
|
fprintf(ficgp,"\n#\n#\n# Survival functions in state j : 'LIJ_' files, cov=%d state=%d",k1, cpt); |
|
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
|
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
|
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
|
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
|
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
|
vlv= nbcode[Tvaraff[k]][lv]; |
|
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
|
} |
|
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
|
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
|
} |
|
fprintf(ficgp,"\n#\n"); |
|
if(invalidvarcomb[k1]){ |
|
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
|
continue; |
continue; |
} |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state cpt*/ |
|
fprintf(ficgp,"\n#\n#\n# Survival functions in state j : 'LIJ_' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"LIJ_"),cpt,k1); |
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability to be alive\" \n\ |
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
set ter svg size 640, 480\n \ |
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
unset log y\n \ |
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
plot [%.f:%.f] ", ageminpar, agemaxpar); |
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
k=3; |
vlv= nbcode[Tvaraff[k]][lv]; |
for (i=1; i<= nlstate ; i ++){ |
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
if(i==1){ |
|
fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_")); |
|
}else{ |
|
fprintf(ficgp,", '' "); |
|
} |
} |
l=(nlstate+ndeath)*(i-1)+1; |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); |
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
for (j=2; j<= nlstate+ndeath ; j ++) |
} |
fprintf(ficgp,"+$%d",k+l+j-1); |
fprintf(ficgp,"\n#\n"); |
fprintf(ficgp,")) t \"l(%d,%d)\" w l",i,cpt); |
if(invalidvarcomb[k1]){ |
} /* nlstate */ |
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
fprintf(ficgp,"\nset out\n"); |
continue; |
} /* end cpt state*/ |
} |
} /* end covariate */ |
|
|
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"LIJ_"),cpt,k1); |
|
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability to be alive\" \n\ |
|
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
|
k=3; |
|
for (i=1; i<= nlstate ; i ++){ |
|
if(i==1){ |
|
fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_")); |
|
}else{ |
|
fprintf(ficgp,", '' "); |
|
} |
|
l=(nlstate+ndeath)*(i-1)+1; |
|
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l); |
|
for (j=2; j<= nlstate+ndeath ; j ++) |
|
fprintf(ficgp,"+$%d",k+l+j-1); |
|
fprintf(ficgp,")) t \"l(%d,%d)\" w l",i,cpt); |
|
} /* nlstate */ |
|
fprintf(ficgp,"\nset out\n"); |
|
} /* end cpt state*/ |
|
} /* end nres */ |
|
} /* end covariate k1 */ |
|
|
/* 5eme */ |
/* 5eme */ |
/* Survival functions (period) from state i in state j by final state j */ |
/* Survival functions (period) from state i in state j by final state j */ |
for (k1=1; k1<= m ; k1 ++) /* For each covariate combination if any */ |
for (k1=1; k1<= m ; k1++){ /* For each covariate combination if any */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
if(TKresult[nres]!= k1) |
if(TKresult[nres]!= k1) |
continue; |
|
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each inital state */ |
|
|
|
fprintf(ficgp,"\n#\n#\n# Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=%d state=%d",k1, cpt); |
|
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
|
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
|
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
|
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
|
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
|
vlv= nbcode[Tvaraff[k]][lv]; |
|
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
|
} |
|
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
|
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
|
} |
|
fprintf(ficgp,"\n#\n"); |
|
if(invalidvarcomb[k1]){ |
|
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
|
continue; |
continue; |
} |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each inital state */ |
|
fprintf(ficgp,"\n#\n#\n# Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=%d state=%d",k1, cpt); |
|
for (k=1; k<=cptcoveff; k++){ /* For each covariate and each value */ |
|
lv= decodtabm(k1,k,cptcoveff); /* Should be the covariate number corresponding to k1 combination */ |
|
/* decodtabm(1,1,4) = 1 because h=1 k= (1) 1 1 1 */ |
|
/* decodtabm(1,2,4) = 1 because h=1 k= 1 (1) 1 1 */ |
|
/* decodtabm(13,3,4)= 2 because h=13 k= 1 1 (2) 2 */ |
|
vlv= nbcode[Tvaraff[k]][lv]; |
|
fprintf(ficgp," V%d=%d ",Tvaraff[k],vlv); |
|
} |
|
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
|
fprintf(ficgp," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
|
} |
|
fprintf(ficgp,"\n#\n"); |
|
if(invalidvarcomb[k1]){ |
|
fprintf(ficgp,"#Combination (%d) ignored because no cases \n",k1); |
|
continue; |
|
} |
|
|
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"LIJT_"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"LIJT_"),cpt,k1); |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability to be alive\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability to be alive\" \n\ |
set ter svg size 640, 480\n \ |
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
unset log y\n \ |
k=3; |
plot [%.f:%.f] ", ageminpar, agemaxpar); |
for (j=1; j<= nlstate ; j ++){ /* Lived in state j */ |
k=3; |
if(j==1) |
for (j=1; j<= nlstate ; j ++){ /* Lived in state j */ |
fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_")); |
if(j==1) |
else |
fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_")); |
fprintf(ficgp,", '' "); |
else |
l=(nlstate+ndeath)*(cpt-1) +j; |
fprintf(ficgp,", '' "); |
fprintf(ficgp," u (($1==%d && (floor($2)%%5 == 0)) ? ($3):1/0):($%d",k1,k+l); |
l=(nlstate+ndeath)*(cpt-1) +j; |
/* for (i=2; i<= nlstate+ndeath ; i ++) */ |
fprintf(ficgp," u (($1==%d && (floor($2)%%5 == 0)) ? ($3):1/0):($%d",k1,k+l); |
/* fprintf(ficgp,"+$%d",k+l+i-1); */ |
/* for (i=2; i<= nlstate+ndeath ; i ++) */ |
fprintf(ficgp,") t \"l(%d,%d)\" w l",cpt,j); |
/* fprintf(ficgp,"+$%d",k+l+i-1); */ |
} /* nlstate */ |
fprintf(ficgp,") t \"l(%d,%d)\" w l",cpt,j); |
fprintf(ficgp,", '' "); |
} /* nlstate */ |
fprintf(ficgp," u (($1==%d && (floor($2)%%5 == 0)) ? ($3):1/0):(",k1); |
fprintf(ficgp,", '' "); |
for (j=1; j<= nlstate ; j ++){ /* Lived in state j */ |
fprintf(ficgp," u (($1==%d && (floor($2)%%5 == 0)) ? ($3):1/0):(",k1); |
l=(nlstate+ndeath)*(cpt-1) +j; |
for (j=1; j<= nlstate ; j ++){ /* Lived in state j */ |
if(j < nlstate) |
l=(nlstate+ndeath)*(cpt-1) +j; |
fprintf(ficgp,"$%d +",k+l); |
if(j < nlstate) |
else |
fprintf(ficgp,"$%d +",k+l); |
fprintf(ficgp,"$%d) t\"l(%d,.)\" w l",k+l,cpt); |
else |
} |
fprintf(ficgp,"$%d) t\"l(%d,.)\" w l",k+l,cpt); |
fprintf(ficgp,"\nset out\n"); |
} |
} /* end cpt state*/ |
fprintf(ficgp,"\nset out\n"); |
} /* end covariate */ |
} /* end cpt state*/ |
} /* end nres */ |
} /* end covariate */ |
|
|
|
/* 6eme */ |
/* 6eme */ |
/* CV preval stable (period) for each covariate */ |
/* CV preval stable (period) for each covariate */ |
Line 6593 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6604 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
|
|
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"P_"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"P_"),cpt,k1); |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
set ter svg size 640, 480\n \ |
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
unset log y\n \ |
|
plot [%.f:%.f] ", ageminpar, agemaxpar); |
|
k=3; /* Offset */ |
k=3; /* Offset */ |
for (i=1; i<= nlstate ; i ++){ |
for (i=1; i<= nlstate ; i ++){ |
if(i==1) |
if(i==1) |
Line 6641 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6650 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
|
|
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"PB_"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"PB_"),cpt,k1); |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
set ter svg size 640, 480\n \ |
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
unset log y\n \ |
|
plot [%.f:%.f] ", ageminpar, agemaxpar); |
|
k=3; /* Offset */ |
k=3; /* Offset */ |
for (i=1; i<= nlstate ; i ++){ |
for (i=1; i<= nlstate ; i ++){ |
if(i==1) |
if(i==1) |
Line 6695 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6702 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficgp,"# hpijx=probability over h years, hp.jx is weighted by observed prev\n "); |
fprintf(ficgp,"# hpijx=probability over h years, hp.jx is weighted by observed prev\n "); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"PROJ_"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"PROJ_"),cpt,k1); |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Prevalence\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Prevalence\" \n\ |
set ter svg size 640, 480\n \ |
set ter svg size 640, 480\nunset log y\nplot [%.f:%.f] ", ageminpar, agemaxpar); |
unset log y\n \ |
|
plot [%.f:%.f] ", ageminpar, agemaxpar); |
|
for (i=1; i<= nlstate+1 ; i ++){ /* nlstate +1 p11 p21 p.1 */ |
for (i=1; i<= nlstate+1 ; i ++){ /* nlstate +1 p11 p21 p.1 */ |
/*# V1 = 1 V2 = 0 yearproj age p11 p21 p.1 p12 p22 p.2 p13 p23 p.3*/ |
/*# V1 = 1 V2 = 0 yearproj age p11 p21 p.1 p12 p22 p.2 p13 p23 p.3*/ |
/*# 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 */ |
/*# 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 */ |
Line 6764 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6769 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
} /* End if prevfcast */ |
} /* End if prevfcast */ |
|
|
|
|
/* proba elementaires */ |
/* 9eme writing MLE parameters */ |
fprintf(ficgp,"\n##############\n#MLE estimated parameters\n#############\n"); |
fprintf(ficgp,"\n##############\n#9eme MLE estimated parameters\n#############\n"); |
for(i=1,jk=1; i <=nlstate; i++){ |
for(i=1,jk=1; i <=nlstate; i++){ |
fprintf(ficgp,"# initial state %d\n",i); |
fprintf(ficgp,"# initial state %d\n",i); |
for(k=1; k <=(nlstate+ndeath); k++){ |
for(k=1; k <=(nlstate+ndeath); k++){ |
Line 6782 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6787 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficgp,"##############\n#\n"); |
fprintf(ficgp,"##############\n#\n"); |
|
|
/*goto avoid;*/ |
/*goto avoid;*/ |
fprintf(ficgp,"\n##############\n#Graphics of probabilities or incidences\n#############\n"); |
/* 10eme Graphics of probabilities or incidences using written MLE parameters */ |
|
fprintf(ficgp,"\n##############\n#10eme Graphics of probabilities or incidences\n#############\n"); |
fprintf(ficgp,"# logi(p12/p11)=a12+b12*age+c12age*age+d12*V1+e12*V1*age\n"); |
fprintf(ficgp,"# logi(p12/p11)=a12+b12*age+c12age*age+d12*V1+e12*V1*age\n"); |
fprintf(ficgp,"# logi(p12/p11)=p1 +p2*age +p3*age*age+ p4*V1+ p5*V1*age\n"); |
fprintf(ficgp,"# logi(p12/p11)=p1 +p2*age +p3*age*age+ p4*V1+ p5*V1*age\n"); |
fprintf(ficgp,"# logi(p13/p11)=a13+b13*age+c13age*age+d13*V1+e13*V1*age\n"); |
fprintf(ficgp,"# logi(p13/p11)=a13+b13*age+c13age*age+d13*V1+e13*V1*age\n"); |
Line 6797 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6803 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficgp,"# +exp(a14+b14*age+c14age*age+d14*V1+e14*V1*age)+...)\n"); |
fprintf(ficgp,"# +exp(a14+b14*age+c14age*age+d14*V1+e14*V1*age)+...)\n"); |
fprintf(ficgp,"#\n"); |
fprintf(ficgp,"#\n"); |
for(ng=1; ng<=3;ng++){ /* Number of graphics: first is logit, 2nd is probabilities, third is incidences per year*/ |
for(ng=1; ng<=3;ng++){ /* Number of graphics: first is logit, 2nd is probabilities, third is incidences per year*/ |
fprintf(ficgp,"#Number of graphics: first is logit, 2nd is probabilities, third is incidences per year \n"); |
fprintf(ficgp,"#Number of graphics: first is logit, 2nd is probabilities, third is incidences per year\n"); |
fprintf(ficgp,"#model=%s \n",model); |
fprintf(ficgp,"#model=%s \n",model); |
fprintf(ficgp,"# ng=%d\n",ng); |
fprintf(ficgp,"# Type of graphic ng=%d\n",ng); |
fprintf(ficgp,"# jk=1 to 2^%d=%d\n",cptcoveff,m);/* to be checked */ |
fprintf(ficgp,"# jk=1 to 2^%d=%d\n",cptcoveff,m);/* to be checked */ |
for(jk=1; jk <=m; jk++) /* For each combination of covariate */ |
for(jk=1; jk <=m; jk++) /* For each combination of covariate */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
Line 6856 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6862 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
/* printf("Tage[%d]=%d, j=%d\n", ij, Tage[ij], j); */ |
/* printf("Tage[%d]=%d, j=%d\n", ij, Tage[ij], j); */ |
if(j==Tage[ij]) { /* Product by age */ |
if(j==Tage[ij]) { /* Product by age */ |
if(ij <=cptcovage) { /* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1, 2 V5 and V1 */ |
if(ij <=cptcovage) { /* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1, 2 V5 and V1 */ |
if(Dummy[j]==0){ |
if(DummyV[j]==0){ |
fprintf(ficgp,"+p%d*%d*x",i+j+2+nagesqr-1,Tinvresult[nres][Tvar[j]]);; |
fprintf(ficgp,"+p%d*%d*x",i+j+2+nagesqr-1,Tinvresult[nres][Tvar[j]]);; |
}else{ /* quantitative */ |
}else{ /* quantitative */ |
fprintf(ficgp,"+p%d*%f*x",i+j+2+nagesqr-1,Tqinvresult[nres][Tvar[j]]); /* Tqinvresult in decoderesult */ |
fprintf(ficgp,"+p%d*%f*x",i+j+2+nagesqr-1,Tqinvresult[nres][Tvar[j]]); /* Tqinvresult in decoderesult */ |
Line 6867 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6873 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
}else if(j==Tprod[ijp]) { /* */ |
}else if(j==Tprod[ijp]) { /* */ |
/* printf("Tprod[%d]=%d, j=%d\n", ij, Tprod[ijp], j); */ |
/* printf("Tprod[%d]=%d, j=%d\n", ij, Tprod[ijp], j); */ |
if(ijp <=cptcovprod) { /* Product */ |
if(ijp <=cptcovprod) { /* Product */ |
if(Dummy[Tvard[ijp][1]]==0){/* Vn is dummy */ |
if(DummyV[Tvard[ijp][1]]==0){/* Vn is dummy */ |
if(Dummy[Tvard[ijp][2]]==0){/* Vn and Vm are dummy */ |
if(DummyV[Tvard[ijp][2]]==0){/* Vn and Vm are dummy */ |
/* fprintf(ficgp,"+p%d*%d*%d",i+j+2+nagesqr-1,nbcode[Tvard[ijp][1]][codtabm(jk,j)],nbcode[Tvard[ijp][2]][codtabm(jk,j)]); */ |
/* fprintf(ficgp,"+p%d*%d*%d",i+j+2+nagesqr-1,nbcode[Tvard[ijp][1]][codtabm(jk,j)],nbcode[Tvard[ijp][2]][codtabm(jk,j)]); */ |
fprintf(ficgp,"+p%d*%d*%d",i+j+2+nagesqr-1,Tinvresult[nres][Tvard[ijp][1]],Tinvresult[nres][Tvard[ijp][2]]); |
fprintf(ficgp,"+p%d*%d*%d",i+j+2+nagesqr-1,Tinvresult[nres][Tvard[ijp][1]],Tinvresult[nres][Tvard[ijp][2]]); |
}else{ /* Vn is dummy and Vm is quanti */ |
}else{ /* Vn is dummy and Vm is quanti */ |
Line 6876 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 6882 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficgp,"+p%d*%d*%f",i+j+2+nagesqr-1,Tinvresult[nres][Tvard[ijp][1]],Tqinvresult[nres][Tvard[ijp][2]]); |
fprintf(ficgp,"+p%d*%d*%f",i+j+2+nagesqr-1,Tinvresult[nres][Tvard[ijp][1]],Tqinvresult[nres][Tvard[ijp][2]]); |
} |
} |
}else{ /* Vn*Vm Vn is quanti */ |
}else{ /* Vn*Vm Vn is quanti */ |
if(Dummy[Tvard[ijp][2]]==0){ |
if(DummyV[Tvard[ijp][2]]==0){ |
fprintf(ficgp,"+p%d*%d*%f",i+j+2+nagesqr-1,Tinvresult[nres][Tvard[ijp][2]],Tqinvresult[nres][Tvard[ijp][1]]); |
fprintf(ficgp,"+p%d*%d*%f",i+j+2+nagesqr-1,Tinvresult[nres][Tvard[ijp][2]],Tqinvresult[nres][Tvard[ijp][1]]); |
}else{ /* Both quanti */ |
}else{ /* Both quanti */ |
fprintf(ficgp,"+p%d*%f*%f",i+j+2+nagesqr-1,Tqinvresult[nres][Tvard[ijp][1]],Tqinvresult[nres][Tvard[ijp][2]]); |
fprintf(ficgp,"+p%d*%f*%f",i+j+2+nagesqr-1,Tqinvresult[nres][Tvard[ijp][1]],Tqinvresult[nres][Tvard[ijp][2]]); |
} |
} |
} |
} |
|
ijp++; |
} |
} |
} else{ /* simple covariate */ |
} else{ /* simple covariate */ |
/* fprintf(ficgp,"+p%d*%d",i+j+2+nagesqr-1,nbcode[Tvar[j]][codtabm(jk,j)]); /\* Valgrind bug nbcode *\/ */ |
/* fprintf(ficgp,"+p%d*%d",i+j+2+nagesqr-1,nbcode[Tvar[j]][codtabm(jk,j)]); /\* Valgrind bug nbcode *\/ */ |
Line 7175 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 7182 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficresf," V%d (=) %d",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresf," V%d (=) %d",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
} |
} |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficresf," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficlog," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
|
} |
} |
fprintf(ficresf," yearproj age"); |
fprintf(ficresf," yearproj age"); |
for(j=1; j<=nlstate+ndeath;j++){ |
for(j=1; j<=nlstate+ndeath;j++){ |
Line 7822 int readdata(char datafile[], int firsto
|
Line 7828 int readdata(char datafile[], int firsto
|
/* Loops on waves */ |
/* Loops on waves */ |
for (j=maxwav;j>=1;j--){ |
for (j=maxwav;j>=1;j--){ |
for (iv=nqtv;iv>=1;iv--){ /* Loop on time varying quantitative variables */ |
for (iv=nqtv;iv>=1;iv--){ /* Loop on time varying quantitative variables */ |
cutv(stra, strb, line, ' '); |
cutv(stra, strb, line, ' '); |
if(strb[0]=='.') { /* Missing value */ |
if(strb[0]=='.') { /* Missing value */ |
lval=-1; |
lval=-1; |
cotqvar[j][iv][i]=-1; /* 0.0/0.0 */ |
cotqvar[j][iv][i]=-1; /* 0.0/0.0 */ |
cotvar[j][ntv+iv][i]=-1; /* For performance reasons */ |
cotvar[j][ntv+iv][i]=-1; /* For performance reasons */ |
if(isalpha(strb[1])) { /* .m or .d Really Missing value */ |
if(isalpha(strb[1])) { /* .m or .d Really Missing value */ |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
}else{ |
}else{ |
errno=0; |
errno=0; |
/* what_kind_of_number(strb); */ |
/* what_kind_of_number(strb); */ |
dval=strtod(strb,&endptr); |
dval=strtod(strb,&endptr); |
/* if( strb[0]=='\0' || (*endptr != '\0')){ */ |
/* if( strb[0]=='\0' || (*endptr != '\0')){ */ |
/* if(strb != endptr && *endptr == '\0') */ |
/* if(strb != endptr && *endptr == '\0') */ |
/* dval=dlval; */ |
/* dval=dlval; */ |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN)) */ |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN)) */ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,iv, nqtv, j,maxwav); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,iv, nqtv, j,maxwav); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line, iv, nqtv, j,maxwav);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line, iv, nqtv, j,maxwav);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
cotqvar[j][iv][i]=dval; |
cotqvar[j][iv][i]=dval; |
cotvar[j][ntv+iv][i]=dval; |
cotvar[j][ntv+iv][i]=dval; |
} |
} |
strcpy(line,stra); |
strcpy(line,stra); |
}/* end loop ntqv */ |
}/* end loop ntqv */ |
|
|
for (iv=ntv;iv>=1;iv--){ /* Loop on time varying dummies */ |
for (iv=ntv;iv>=1;iv--){ /* Loop on time varying dummies */ |
cutv(stra, strb, line, ' '); |
cutv(stra, strb, line, ' '); |
if(strb[0]=='.') { /* Missing value */ |
if(strb[0]=='.') { /* Missing value */ |
lval=-1; |
lval=-1; |
}else{ |
}else{ |
errno=0; |
errno=0; |
lval=strtol(strb,&endptr,10); |
lval=strtol(strb,&endptr,10); |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th dummy covariate out of %d measured at wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,iv, ntv, j,maxwav); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th dummy covariate out of %d measured at wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,iv, ntv, j,maxwav); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d dummy covariate out of %d measured wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,iv, ntv,j,maxwav);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d dummy covariate out of %d measured wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,iv, ntv,j,maxwav);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
} |
} |
if(lval <-1 || lval >1){ |
if(lval <-1 || lval >1){ |
printf("Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
printf("Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
build V1=0 V2=0 for the reference value (1),\n \ |
build V1=0 V2=0 for the reference value (1),\n \ |
V1=1 V2=0 for (2) \n \ |
V1=1 V2=0 for (2) \n \ |
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
output of IMaCh is often meaningless.\n \ |
output of IMaCh is often meaningless.\n \ |
Exiting.\n",lval,linei, i,line,j); |
Exiting.\n",lval,linei, i,line,j); |
fprintf(ficlog,"Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
fprintf(ficlog,"Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
build V1=0 V2=0 for the reference value (1),\n \ |
build V1=0 V2=0 for the reference value (1),\n \ |
V1=1 V2=0 for (2) \n \ |
V1=1 V2=0 for (2) \n \ |
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
output of IMaCh is often meaningless.\n \ |
output of IMaCh is often meaningless.\n \ |
Exiting.\n",lval,linei, i,line,j);fflush(ficlog); |
Exiting.\n",lval,linei, i,line,j);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
cotvar[j][iv][i]=(double)(lval); |
cotvar[j][iv][i]=(double)(lval); |
strcpy(line,stra); |
strcpy(line,stra); |
}/* end loop ntv */ |
}/* end loop ntv */ |
|
|
/* Statuses at wave */ |
/* Statuses at wave */ |
cutv(stra, strb, line, ' '); |
cutv(stra, strb, line, ' '); |
if(strb[0]=='.') { /* Missing value */ |
if(strb[0]=='.') { /* Missing value */ |
lval=-1; |
lval=-1; |
}else{ |
}else{ |
errno=0; |
errno=0; |
lval=strtol(strb,&endptr,10); |
lval=strtol(strb,&endptr,10); |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
} |
} |
|
|
s[j][i]=lval; |
s[j][i]=lval; |
Line 8207 int decodemodel( char model[], int lasto
|
Line 8213 int decodemodel( char model[], int lasto
|
* - Tvard[k] p Tvard[1][1]@4 {7, 8, 5, 6} for V7*V8 and V5*V6 . |
* - Tvard[k] p Tvard[1][1]@4 {7, 8, 5, 6} for V7*V8 and V5*V6 . |
*/ |
*/ |
{ |
{ |
int i, j, k, ks; |
int i, j, k, ks, v; |
int j1, k1, k2, k3, k4; |
int j1, k1, k2, k3, k4; |
char modelsav[80]; |
char modelsav[80]; |
char stra[80], strb[80], strc[80], strd[80],stre[80]; |
char stra[80], strb[80], strc[80], strd[80],stre[80]; |
Line 8414 Typevar: 0 for simple covariate (dummy,
|
Line 8420 Typevar: 0 for simple covariate (dummy,
|
Fixed[k] 0=fixed (product or simple), 1 varying, 2 fixed with age product, 3 varying with age product \n\ |
Fixed[k] 0=fixed (product or simple), 1 varying, 2 fixed with age product, 3 varying with age product \n\ |
Dummy[k] 0=dummy (0 1), 1 quantitative (single or product without age), 2 dummy with age product, 3 quant with age product\n",model); |
Dummy[k] 0=dummy (0 1), 1 quantitative (single or product without age), 2 dummy with age product, 3 quant with age product\n",model); |
|
|
|
for(v=1; v <=ncovcol;v++){ |
|
DummyV[v]=0; |
|
FixedV[v]=0; |
|
} |
|
for(v=ncovcol+1; v <=ncovcol+nqv;v++){ |
|
DummyV[v]=1; |
|
FixedV[v]=0; |
|
} |
|
for(v=ncovcol+nqv+1; v <=ncovcol+nqv+ntv;v++){ |
|
DummyV[v]=0; |
|
FixedV[v]=1; |
|
} |
|
for(v=ncovcol+nqv+ntv+1; v <=ncovcol+nqv+ntv+nqtv;v++){ |
|
DummyV[v]=1; |
|
FixedV[v]=1; |
|
} |
|
for(v=1; v <=ncovcol+nqv+ntv+nqtv;v++){ |
|
printf("Decodemodel: V%d, Dummy(V%d)=%d, FixedV(V%d)=%d\n",v,v,DummyV[v],v,FixedV[v]); |
|
fprintf(ficlog,"Decodemodel: V%d, Dummy(V%d)=%d, FixedV(V%d)=%d\n",v,v,DummyV[v],v,FixedV[v]); |
|
} |
for(k=1, ncovf=0, nsd=0, nsq=0, ncovv=0, ncova=0, ncoveff=0, nqfveff=0, ntveff=0, nqtveff=0;k<=cptcovt; k++){ /* or cptocvt */ |
for(k=1, ncovf=0, nsd=0, nsq=0, ncovv=0, ncova=0, ncoveff=0, nqfveff=0, ntveff=0, nqtveff=0;k<=cptcovt; k++){ /* or cptocvt */ |
if (Tvar[k] <=ncovcol && Typevar[k]==0 ){ /* Simple fixed dummy (<=ncovcol) covariates */ |
if (Tvar[k] <=ncovcol && Typevar[k]==0 ){ /* Simple fixed dummy (<=ncovcol) covariates */ |
Fixed[k]= 0; |
Fixed[k]= 0; |
Line 9028 int prevalence_limit(double *p, double *
|
Line 9054 int prevalence_limit(double *p, double *
|
i1=pow(2,cptcoveff); /* Number of combination of dummy covariates */ |
i1=pow(2,cptcoveff); /* Number of combination of dummy covariates */ |
if (cptcovn < 1){i1=1;} |
if (cptcovn < 1){i1=1;} |
|
|
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(k=1; k<=i1;k++){ /* For each combination k of dummy covariates in the model */ |
for(k=1; k<=i1;k++){ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
if(TKresult[nres]!= k) |
if(TKresult[nres]!= k) |
continue; |
continue; |
|
|
/* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
/* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
/* for(cptcov=1,k=0;cptcov<=1;cptcov++){ */ |
/* for(cptcov=1,k=0;cptcov<=1;cptcov++){ */ |
//for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
//for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
/* k=k+1; */ |
/* k=k+1; */ |
/* to clean */ |
/* to clean */ |
//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtabm(cptcod,cptcov)); |
//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtabm(cptcod,cptcov)); |
fprintf(ficrespl,"#******"); |
fprintf(ficrespl,"#******"); |
printf("#******"); |
printf("#******"); |
fprintf(ficlog,"#******"); |
fprintf(ficlog,"#******"); |
for(j=1;j<=cptcoveff ;j++) {/* all covariates */ |
for(j=1;j<=cptcoveff ;j++) {/* all covariates */ |
fprintf(ficrespl," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); /* Here problem for varying dummy*/ |
fprintf(ficrespl," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); /* Here problem for varying dummy*/ |
printf(" V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
printf(" V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficlog," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficlog," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
} |
} |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
printf(" V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficlog," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficrespl," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
} |
fprintf(ficlog," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(ficrespl,"******\n"); |
} |
printf("******\n"); |
fprintf(ficrespl,"******\n"); |
fprintf(ficlog,"******\n"); |
printf("******\n"); |
if(invalidvarcomb[k]){ |
fprintf(ficlog,"******\n"); |
printf("\nCombination (%d) ignored because no case \n",k); |
if(invalidvarcomb[k]){ |
fprintf(ficrespl,"#Combination (%d) ignored because no case \n",k); |
printf("\nCombination (%d) ignored because no case \n",k); |
fprintf(ficlog,"\nCombination (%d) ignored because no case \n",k); |
fprintf(ficrespl,"#Combination (%d) ignored because no case \n",k); |
continue; |
fprintf(ficlog,"\nCombination (%d) ignored because no case \n",k); |
} |
continue; |
|
} |
|
|
fprintf(ficrespl,"#Age "); |
fprintf(ficrespl,"#Age "); |
for(j=1;j<=cptcoveff;j++) { |
for(j=1;j<=cptcoveff;j++) { |
fprintf(ficrespl,"V%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficrespl,"V%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
} |
} |
for(i=1; i<=nlstate;i++) fprintf(ficrespl," %d-%d ",i,i); |
for(i=1; i<=nlstate;i++) fprintf(ficrespl," %d-%d ",i,i); |
fprintf(ficrespl,"Total Years_to_converge\n"); |
fprintf(ficrespl,"Total Years_to_converge\n"); |
|
|
for (age=agebase; age<=agelim; age++){ |
for (age=agebase; age<=agelim; age++){ |
/* for (age=agebase; age<=agebase; age++){ */ |
/* for (age=agebase; age<=agebase; age++){ */ |
prevalim(prlim, nlstate, p, age, oldm, savm, ftolpl, ncvyearp, k, nres); |
prevalim(prlim, nlstate, p, age, oldm, savm, ftolpl, ncvyearp, k, nres); |
fprintf(ficrespl,"%.0f ",age ); |
fprintf(ficrespl,"%.0f ",age ); |
for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
fprintf(ficrespl,"%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficrespl,"%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
tot=0.; |
tot=0.; |
for(i=1; i<=nlstate;i++){ |
for(i=1; i<=nlstate;i++){ |
tot += prlim[i][i]; |
tot += prlim[i][i]; |
fprintf(ficrespl," %.5f", prlim[i][i]); |
fprintf(ficrespl," %.5f", prlim[i][i]); |
} |
} |
fprintf(ficrespl," %.3f %d\n", tot, *ncvyearp); |
fprintf(ficrespl," %.3f %d\n", tot, *ncvyearp); |
} /* Age */ |
} /* Age */ |
/* was end of cptcod */ |
/* was end of cptcod */ |
} /* cptcov */ |
} /* cptcov */ |
|
} /* nres */ |
return 0; |
return 0; |
} |
} |
|
|
Line 9123 int back_prevalence_limit(double *p, dou
|
Line 9151 int back_prevalence_limit(double *p, dou
|
i1=pow(2,cptcoveff); |
i1=pow(2,cptcoveff); |
if (cptcovn < 1){i1=1;} |
if (cptcovn < 1){i1=1;} |
|
|
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
if(TKresult[nres]!= k) |
if(TKresult[nres]!= k) |
continue; |
continue; |
//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtabm(cptcod,cptcov)); |
//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtabm(cptcod,cptcov)); |
fprintf(ficresplb,"#******"); |
fprintf(ficresplb,"#******"); |
printf("#******"); |
printf("#******"); |
fprintf(ficlog,"#******"); |
fprintf(ficlog,"#******"); |
for(j=1;j<=cptcoveff ;j++) {/* all covariates */ |
for(j=1;j<=cptcoveff ;j++) {/* all covariates */ |
fprintf(ficresplb," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresplb," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
printf(" V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
printf(" V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficlog," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficlog," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
} |
} |
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
printf(" V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
printf(" V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
fprintf(ficresplb," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
fprintf(ficresplb," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
fprintf(ficlog," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
fprintf(ficlog," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
} |
} |
fprintf(ficresplb,"******\n"); |
fprintf(ficresplb,"******\n"); |
printf("******\n"); |
printf("******\n"); |
fprintf(ficlog,"******\n"); |
fprintf(ficlog,"******\n"); |
if(invalidvarcomb[k]){ |
if(invalidvarcomb[k]){ |
printf("\nCombination (%d) ignored because no cases \n",k); |
printf("\nCombination (%d) ignored because no cases \n",k); |
fprintf(ficresplb,"#Combination (%d) ignored because no cases \n",k); |
fprintf(ficresplb,"#Combination (%d) ignored because no cases \n",k); |
fprintf(ficlog,"\nCombination (%d) ignored because no cases \n",k); |
fprintf(ficlog,"\nCombination (%d) ignored because no cases \n",k); |
continue; |
continue; |
} |
} |
|
|
fprintf(ficresplb,"#Age "); |
fprintf(ficresplb,"#Age "); |
for(j=1;j<=cptcoveff;j++) { |
for(j=1;j<=cptcoveff;j++) { |
fprintf(ficresplb,"V%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresplb,"V%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
} |
} |
for(i=1; i<=nlstate;i++) fprintf(ficresplb," %d-%d ",i,i); |
for(i=1; i<=nlstate;i++) fprintf(ficresplb," %d-%d ",i,i); |
fprintf(ficresplb,"Total Years_to_converge\n"); |
fprintf(ficresplb,"Total Years_to_converge\n"); |
|
|
|
|
for (age=agebase; age<=agelim; age++){ |
for (age=agebase; age<=agelim; age++){ |
/* for (age=agebase; age<=agebase; age++){ */ |
/* for (age=agebase; age<=agebase; age++){ */ |
if(mobilavproj > 0){ |
if(mobilavproj > 0){ |
/* bprevalim(bprlim, mobaverage, nlstate, p, age, ageminpar, agemaxpar, oldm, savm, doldm, dsavm, ftolpl, ncvyearp, k); */ |
/* bprevalim(bprlim, mobaverage, nlstate, p, age, ageminpar, agemaxpar, oldm, savm, doldm, dsavm, ftolpl, ncvyearp, k); */ |
/* bprevalim(bprlim, mobaverage, nlstate, p, age, oldm, savm, dnewm, doldm, dsavm, ftolpl, ncvyearp, k); */ |
/* bprevalim(bprlim, mobaverage, nlstate, p, age, oldm, savm, dnewm, doldm, dsavm, ftolpl, ncvyearp, k); */ |
bprevalim(bprlim, mobaverage, nlstate, p, age, ftolpl, ncvyearp, k); |
bprevalim(bprlim, mobaverage, nlstate, p, age, ftolpl, ncvyearp, k); |
}else if (mobilavproj == 0){ |
}else if (mobilavproj == 0){ |
printf("There is no chance to get back prevalence limit if data aren't non zero and summing to 1, please try a non null mobil_average(=%d) parameter or mobil_average=-1 if you want to try at your own risk.\n",mobilavproj); |
printf("There is no chance to get back prevalence limit if data aren't non zero and summing to 1, please try a non null mobil_average(=%d) parameter or mobil_average=-1 if you want to try at your own risk.\n",mobilavproj); |
fprintf(ficlog,"There is no chance to get back prevalence limit if data aren't non zero and summing to 1, please try a non null mobil_average(=%d) parameter or mobil_average=-1 if you want to try at your own risk.\n",mobilavproj); |
fprintf(ficlog,"There is no chance to get back prevalence limit if data aren't non zero and summing to 1, please try a non null mobil_average(=%d) parameter or mobil_average=-1 if you want to try at your own risk.\n",mobilavproj); |
exit(1); |
exit(1); |
}else{ |
}else{ |
/* bprevalim(bprlim, probs, nlstate, p, age, oldm, savm, dnewm, doldm, dsavm, ftolpl, ncvyearp, k); */ |
/* bprevalim(bprlim, probs, nlstate, p, age, oldm, savm, dnewm, doldm, dsavm, ftolpl, ncvyearp, k); */ |
bprevalim(bprlim, probs, nlstate, p, age, ftolpl, ncvyearp, k); |
bprevalim(bprlim, probs, nlstate, p, age, ftolpl, ncvyearp, k); |
} |
} |
fprintf(ficresplb,"%.0f ",age ); |
fprintf(ficresplb,"%.0f ",age ); |
for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
fprintf(ficresplb,"%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresplb,"%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
tot=0.; |
tot=0.; |
for(i=1; i<=nlstate;i++){ |
for(i=1; i<=nlstate;i++){ |
tot += bprlim[i][i]; |
tot += bprlim[i][i]; |
fprintf(ficresplb," %.5f", bprlim[i][i]); |
fprintf(ficresplb," %.5f", bprlim[i][i]); |
} |
} |
fprintf(ficresplb," %.3f %d\n", tot, *ncvyearp); |
fprintf(ficresplb," %.3f %d\n", tot, *ncvyearp); |
} /* Age */ |
} /* Age */ |
/* was end of cptcod */ |
/* was end of cptcod */ |
} /* cptcov */ |
} /* end of any combination */ |
|
} /* end of nres */ |
/* hBijx(p, bage, fage); */ |
/* hBijx(p, bage, fage); */ |
/* fclose(ficrespijb); */ |
/* fclose(ficrespijb); */ |
|
|
Line 9277 int hPijx(double *p, int bage, int fage)
|
Line 9305 int hPijx(double *p, int bage, int fage)
|
int ageminl; |
int ageminl; |
int hstepm; |
int hstepm; |
int nhstepm; |
int nhstepm; |
int h, i, i1, j, k; |
int h, i, i1, j, k, nres; |
|
|
double agedeb; |
double agedeb; |
double ***p3mat; |
double ***p3mat; |
Line 9305 int hPijx(double *p, int bage, int fage)
|
Line 9333 int hPijx(double *p, int bage, int fage)
|
/* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
/* for(cptcov=1,k=0;cptcov<=i1;cptcov++){ */ |
/* /\*for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*\/ */ |
/* /\*for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*\/ */ |
/* k=k+1; */ |
/* k=k+1; */ |
for (k=1; k <= (int) pow(2,cptcoveff); k++){ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
fprintf(ficrespijb,"\n#****** "); |
for(k=1; k<=i1;k++){ /* For any combination of dummy covariates, fixed and varying */ |
for(j=1;j<=cptcoveff;j++) |
if(TKresult[nres]!= k) |
fprintf(ficrespijb,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
continue; |
fprintf(ficrespijb,"******\n"); |
fprintf(ficrespijb,"\n#****** "); |
if(invalidvarcomb[k]){ |
for(j=1;j<=cptcoveff;j++) |
fprintf(ficrespijb,"\n#Combination (%d) ignored because no cases \n",k); |
fprintf(ficrespijb,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
continue; |
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
} |
fprintf(ficrespijb," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
} |
/* for (agedeb=fage; agedeb>=bage; agedeb--){ /\* If stepm=6 months *\/ */ |
fprintf(ficrespijb,"******\n"); |
for (agedeb=bage; agedeb<=fage; agedeb++){ /* If stepm=6 months and estepm=24 (2 years) */ |
if(invalidvarcomb[k]){ |
/* nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm); /\* Typically 20 years = 20*12/6=40 *\/ */ |
fprintf(ficrespijb,"\n#Combination (%d) ignored because no cases \n",k); |
nhstepm=(int) rint((agedeb-ageminl)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */ |
continue; |
nhstepm = nhstepm/hstepm; /* Typically 40/4=10, because estepm=24 stepm=6 => hstepm=24/6=4 */ |
} |
|
|
/* nhstepm=nhstepm*YEARM; aff par mois*/ |
/* for (agedeb=fage; agedeb>=bage; agedeb--){ /\* If stepm=6 months *\/ */ |
|
for (agedeb=bage; agedeb<=fage; agedeb++){ /* If stepm=6 months and estepm=24 (2 years) */ |
p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
/* nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm); /\* Typically 20 years = 20*12/6=40 *\/ */ |
/* oldm=oldms;savm=savms; */ |
nhstepm=(int) rint((agedeb-ageminl)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */ |
/* hbxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); */ |
nhstepm = nhstepm/hstepm; /* Typically 40/4=10, because estepm=24 stepm=6 => hstepm=24/6=4 */ |
hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm, k); |
|
/* hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm,oldm,savm, dnewm, doldm, dsavm, k); */ |
/* nhstepm=nhstepm*YEARM; aff par mois*/ |
fprintf(ficrespijb,"# Cov Agex agex-h hpijx with i,j="); |
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for(i=1; i<=nlstate;i++) |
p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
for(j=1; j<=nlstate+ndeath;j++) |
/* oldm=oldms;savm=savms; */ |
fprintf(ficrespijb," %1d-%1d",i,j); |
/* hbxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); */ |
fprintf(ficrespijb,"\n"); |
hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm, k); |
for (h=0; h<=nhstepm; h++){ |
/* hbxij(p3mat,nhstepm,agedeb,hstepm,p,prevacurrent,nlstate,stepm,oldm,savm, dnewm, doldm, dsavm, k); */ |
/*agedebphstep = agedeb + h*hstepm/YEARM*stepm;*/ |
fprintf(ficrespijb,"# Cov Agex agex-h hpijx with i,j="); |
fprintf(ficrespijb,"%d %3.f %3.f",k, agedeb, agedeb - h*hstepm/YEARM*stepm ); |
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/* fprintf(ficrespijb,"%d %3.f %3.f",k, agedeb, agedeb + h*hstepm/YEARM*stepm ); */ |
|
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
for(j=1; j<=nlstate+ndeath;j++) |
for(j=1; j<=nlstate+ndeath;j++) |
fprintf(ficrespijb," %.5f", p3mat[i][j][h]); |
fprintf(ficrespijb," %1d-%1d",i,j); |
fprintf(ficrespijb,"\n"); |
fprintf(ficrespijb,"\n"); |
} |
for (h=0; h<=nhstepm; h++){ |
free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
/*agedebphstep = agedeb + h*hstepm/YEARM*stepm;*/ |
fprintf(ficrespijb,"\n"); |
fprintf(ficrespijb,"%d %3.f %3.f",k, agedeb, agedeb - h*hstepm/YEARM*stepm ); |
} |
/* fprintf(ficrespijb,"%d %3.f %3.f",k, agedeb, agedeb + h*hstepm/YEARM*stepm ); */ |
/*}*/ |
for(i=1; i<=nlstate;i++) |
} |
for(j=1; j<=nlstate+ndeath;j++) |
|
fprintf(ficrespijb," %.5f", p3mat[i][j][h]); |
|
fprintf(ficrespijb,"\n"); |
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} |
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free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
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fprintf(ficrespijb,"\n"); |
|
} /* end age deb */ |
|
} /* end combination */ |
|
} /* end nres */ |
return 0; |
return 0; |
} /* hBijx */ |
} /* hBijx */ |
|
|
Line 9975 Please run with mle=-1 to get a correct
|
Line 10009 Please run with mle=-1 to get a correct
|
Typevar=ivector(-1,NCOVMAX); /* -1 to 2 */ |
Typevar=ivector(-1,NCOVMAX); /* -1 to 2 */ |
Fixed=ivector(-1,NCOVMAX); /* -1 to 3 */ |
Fixed=ivector(-1,NCOVMAX); /* -1 to 3 */ |
Dummy=ivector(-1,NCOVMAX); /* -1 to 3 */ |
Dummy=ivector(-1,NCOVMAX); /* -1 to 3 */ |
|
DummyV=ivector(1,NCOVMAX); /* 1 to 3 */ |
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FixedV=ivector(1,NCOVMAX); /* 1 to 3 */ |
/* V2+V1+V4+age*V3 is a model with 4 covariates (3 plus signs). |
/* V2+V1+V4+age*V3 is a model with 4 covariates (3 plus signs). |
For each model-covariate stores the data-covariate id. Tvar[1]=2, Tvar[2]=1, Tvar[3]=4, |
For each model-covariate stores the data-covariate id. Tvar[1]=2, Tvar[2]=1, Tvar[3]=4, |
Tvar[4=age*V3] is 3 and 'age' is recorded in Tage. |
Tvar[4=age*V3] is 3 and 'age' is recorded in Tage. |
Line 10751 Please run with mle=-1 to get a correct
|
Line 10787 Please run with mle=-1 to get a correct
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
fputs(line,stdout); |
fputs(line,stdout); |
|
fputs(line,ficres); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 10767 Please run with mle=-1 to get a correct
|
Line 10804 Please run with mle=-1 to get a correct
|
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
fputs(line,stdout); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
|
fputs(line,ficres); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
|
|
Line 10785 Please run with mle=-1 to get a correct
|
Line 10823 Please run with mle=-1 to get a correct
|
fputs(line,stdout); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
|
fputs(line,ficres); |
continue; |
continue; |
}else |
}else |
break; |
break; |
Line 10803 Please run with mle=-1 to get a correct
|
Line 10842 Please run with mle=-1 to get a correct
|
goto end; |
goto end; |
} |
} |
decoderesult(resultline, nresult); /* Fills TKresult[nresult] combination and Tresult[nresult][k4+1] combination values */ |
decoderesult(resultline, nresult); /* Fills TKresult[nresult] combination and Tresult[nresult][k4+1] combination values */ |
|
fprintf(ficparo,"result: %s\n",resultline); |
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fprintf(ficres,"result: %s\n",resultline); |
|
fprintf(ficlog,"result: %s\n",resultline); |
while(fgets(line, MAXLINE, ficpar)) { |
while(fgets(line, MAXLINE, ficpar)) { |
/* If line starts with a # it is a comment */ |
/* If line starts with a # it is a comment */ |
if (line[0] == '#') { |
if (line[0] == '#') { |
numlinepar++; |
numlinepar++; |
fputs(line,stdout); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
|
fputs(line,ficres); |
fputs(line,ficlog); |
fputs(line,ficlog); |
continue; |
continue; |
}else |
}else |
Line 10953 Please run with mle=-1 to get a correct
|
Line 10996 Please run with mle=-1 to get a correct
|
} |
} |
printf("Computing Health Expectancies: result on file '%s' ...", filerese);fflush(stdout); |
printf("Computing Health Expectancies: result on file '%s' ...", filerese);fflush(stdout); |
fprintf(ficlog,"Computing Health Expectancies: result on file '%s' ...", filerese);fflush(ficlog); |
fprintf(ficlog,"Computing Health Expectancies: result on file '%s' ...", filerese);fflush(ficlog); |
|
|
|
pstamp(ficreseij); |
|
|
i1=pow(2,cptcoveff); /* Number of combination of dummy covariates */ |
i1=pow(2,cptcoveff); /* Number of combination of dummy covariates */ |
if (cptcovn < 1){i1=1;} |
if (cptcovn < 1){i1=1;} |
Line 11065 Please run with mle=-1 to get a correct
|
Line 11110 Please run with mle=-1 to get a correct
|
fprintf(ficrescveij,"******\n"); |
fprintf(ficrescveij,"******\n"); |
|
|
fprintf(ficresvij,"\n#****** "); |
fprintf(ficresvij,"\n#****** "); |
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/* pstamp(ficresvij); */ |
for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
fprintf(ficresvij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresvij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
Line 11242 Please run with mle=-1 to get a correct
|
Line 11288 Please run with mle=-1 to get a correct
|
free_ivector(ncodemaxwundef,1,NCOVMAX); |
free_ivector(ncodemaxwundef,1,NCOVMAX); |
free_ivector(Dummy,-1,NCOVMAX); |
free_ivector(Dummy,-1,NCOVMAX); |
free_ivector(Fixed,-1,NCOVMAX); |
free_ivector(Fixed,-1,NCOVMAX); |
|
free_ivector(DummyV,1,NCOVMAX); |
|
free_ivector(FixedV,1,NCOVMAX); |
free_ivector(Typevar,-1,NCOVMAX); |
free_ivector(Typevar,-1,NCOVMAX); |
free_ivector(Tvar,1,NCOVMAX); |
free_ivector(Tvar,1,NCOVMAX); |
free_ivector(TvarsQ,1,NCOVMAX); |
free_ivector(TvarsQ,1,NCOVMAX); |