version 1.268, 2017/05/18 20:09:32
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version 1.269, 2017/05/23 08:39:25
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.269 2017/05/23 08:39:25 brouard |
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Summary: Code into subroutine, cleanings |
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Revision 1.268 2017/05/18 20:09:32 brouard |
Revision 1.268 2017/05/18 20:09:32 brouard |
Summary: backprojection and confidence intervals of backprevalence |
Summary: backprojection and confidence intervals of backprevalence |
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Line 1084 FILE *ficrescveij;
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Line 1087 FILE *ficrescveij;
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char filerescve[FILENAMELENGTH]; |
char filerescve[FILENAMELENGTH]; |
FILE *ficresvij; |
FILE *ficresvij; |
char fileresv[FILENAMELENGTH]; |
char fileresv[FILENAMELENGTH]; |
FILE *ficresvpl; |
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char fileresvpl[FILENAMELENGTH]; |
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FILE *ficresvbl; |
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char fileresvbl[FILENAMELENGTH]; |
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char title[MAXLINE]; |
char title[MAXLINE]; |
char model[MAXLINE]; /**< The model line */ |
char model[MAXLINE]; /**< The model line */ |
char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH], fileresplb[FILENAMELENGTH]; |
char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH], fileresplb[FILENAMELENGTH]; |
Line 2932 double **pmij(double **ps, double *cov,
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Line 2932 double **pmij(double **ps, double *cov,
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/* Diag(w_x) */ |
/* Diag(w_x) */ |
/* Problem with prevacurrent which can be zero */ |
/* Problem with prevacurrent which can be zero */ |
sumnew=0.; |
sumnew=0.; |
/* for (ii=1;ii<=nlstate+ndeath;ii++){ */ |
/*for (ii=1;ii<=nlstate+ndeath;ii++){*/ |
for (ii=1;ii<=nlstate;ii++){ /* Only on live states */ |
for (ii=1;ii<=nlstate;ii++){ /* Only on live states */ |
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/* printf(" agefin=%d, ii=%d, ij=%d, prev=%f\n",(int)agefin,ii, ij, prevacurrent[(int)agefin][ii][ij]); */ |
sumnew+=prevacurrent[(int)agefin][ii][ij]; |
sumnew+=prevacurrent[(int)agefin][ii][ij]; |
} |
} |
if(sumnew >0.01){ /* At least some value in the prevalence */ |
if(sumnew >0.01){ /* At least some value in the prevalence */ |
for (ii=1;ii<=nlstate+ndeath;ii++){ |
for (ii=1;ii<=nlstate+ndeath;ii++){ |
for (j=1;j<=nlstate+ndeath;j++) |
for (j=1;j<=nlstate+ndeath;j++) |
doldm[ii][j]=(ii==j ? prevacurrent[(int)agefin][ii][ij]/sumnew : 0.0); |
doldm[ii][j]=(ii==j ? prevacurrent[(int)agefin][ii][ij]/sumnew : 0.0); |
} |
} |
}else{ |
}else{ |
for (ii=1;ii<=nlstate+ndeath;ii++){ |
for (ii=1;ii<=nlstate+ndeath;ii++){ |
Line 5694 void concatwav(int wav[], int **dh, int
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Line 5695 void concatwav(int wav[], int **dh, int
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/* if((int)age==70)printf("i=%2d,j=%2d,h=%2d,age=%3d,%9.4f,%9.4f,%9.4f\n",i,j,h,(int)age,p3mat[i][j][h],hf,eij[i][j][(int)age]);*/ |
/* if((int)age==70)printf("i=%2d,j=%2d,h=%2d,age=%3d,%9.4f,%9.4f,%9.4f\n",i,j,h,(int)age,p3mat[i][j][h],hf,eij[i][j][(int)age]);*/ |
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} |
} |
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/* Standard deviation of expectancies ij */ |
fprintf(ficresstdeij,"%3.0f",age ); |
fprintf(ficresstdeij,"%3.0f",age ); |
for(i=1; i<=nlstate;i++){ |
for(i=1; i<=nlstate;i++){ |
eip=0.; |
eip=0.; |
Line 5709 void concatwav(int wav[], int **dh, int
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Line 5711 void concatwav(int wav[], int **dh, int
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} |
} |
fprintf(ficresstdeij,"\n"); |
fprintf(ficresstdeij,"\n"); |
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/* Variance of expectancies ij */ |
fprintf(ficrescveij,"%3.0f",age ); |
fprintf(ficrescveij,"%3.0f",age ); |
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
for(j=1; j<=nlstate;j++){ |
for(j=1; j<=nlstate;j++){ |
Line 6062 void concatwav(int wav[], int **dh, int
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Line 6065 void concatwav(int wav[], int **dh, int
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} /* end varevsij */ |
} /* end varevsij */ |
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/************ Variance of prevlim ******************/ |
/************ Variance of prevlim ******************/ |
void varprevlim(char fileres[], double **varpl, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **prlim, double ftolpl, int *ncvyearp, int ij, char strstart[], int nres) |
void varprevlim(char fileresvpl[], FILE *ficresvpl, double **varpl, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **prlim, double ftolpl, int *ncvyearp, int ij, char strstart[], int nres) |
{ |
{ |
/* Variance of prevalence limit for each state ij using current parameters x[] and estimates of neighbourhood give by delti*/ |
/* Variance of prevalence limit for each state ij using current parameters x[] and estimates of neighbourhood give by delti*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
Line 6187 void concatwav(int wav[], int **dh, int
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Line 6190 void concatwav(int wav[], int **dh, int
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/************ Variance of backprevalence limit ******************/ |
/************ Variance of backprevalence limit ******************/ |
void varbrevlim(char fileres[], double **varbpl, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **bprlim, double ftolpl, int mobilavproj, int *ncvyearp, int ij, char strstart[], int nres) |
void varbrevlim(char fileresvbl[], FILE *ficresvbl, double **varbpl, double **matcov, double x[], double delti[], int nlstate, int stepm, double bage, double fage, double **oldm, double **savm, double **bprlim, double ftolpl, int mobilavproj, int *ncvyearp, int ij, char strstart[], int nres) |
{ |
{ |
/* Variance of backward prevalence limit for each state ij using current parameters x[] and estimates of neighbourhood give by delti*/ |
/* Variance of backward prevalence limit for each state ij using current parameters x[] and estimates of neighbourhood give by delti*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
/* double **prevalim(double **prlim, int nlstate, double *xp, double age, double **oldm, double **savm,double ftolpl);*/ |
Line 8112 set ter svg size 640, 480\nunset log y\n
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Line 8115 set ter svg size 640, 480\nunset log y\n
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/************** Forecasting ******************/ |
/************** Forecasting ******************/ |
void prevforecast(char fileres[], double anproj1, double mproj1, double jproj1, double ageminpar, double agemax, double dateprev1, double dateprev2, int mobilav, double bage, double fage, int firstpass, int lastpass, double anproj2, double p[], int cptcoveff){ |
void prevforecast(char fileres[], double anproj1, double mproj1, double jproj1, double ageminpar, double agemax, double dateprev1, double dateprev2, int mobilav, double ***prev, double bage, double fage, int firstpass, int lastpass, double anproj2, double p[], int cptcoveff){ |
/* proj1, year, month, day of starting projection |
/* proj1, year, month, day of starting projection |
agemin, agemax range of age |
agemin, agemax range of age |
dateprev1 dateprev2 range of dates during which prevalence is computed |
dateprev1 dateprev2 range of dates during which prevalence is computed |
Line 8218 void prevforecast(char fileres[], double
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Line 8221 void prevforecast(char fileres[], double
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ppij=0.; |
ppij=0.; |
for(i=1; i<=nlstate;i++) { |
for(i=1; i<=nlstate;i++) { |
/* if (mobilav>=1) */ |
/* if (mobilav>=1) */ |
ppij=ppij+p3mat[i][j][h]*mobaverage[(int)agec][i][k]; |
ppij=ppij+p3mat[i][j][h]*prev[(int)agec][i][k]; |
/* else { */ /* even if mobilav==-1 we use mobaverage */ |
/* else { */ /* even if mobilav==-1 we use mobaverage */ |
/* ppij=ppij+p3mat[i][j][h]*probs[(int)(agec)][i][k]; */ |
/* ppij=ppij+p3mat[i][j][h]*probs[(int)(agec)][i][k]; */ |
/* } */ |
/* } */ |
Line 8239 void prevforecast(char fileres[], double
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Line 8242 void prevforecast(char fileres[], double
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} |
} |
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/* /\************** Back Forecasting ******************\/ */ |
/************** Back Forecasting ******************/ |
void prevbackforecast(char fileres[], double ***prevacurrent, double anback1, double mback1, double jback1, double ageminpar, double agemax, double dateprev1, double dateprev2, int mobilav, double bage, double fage, int firstpass, int lastpass, double anback2, double p[], int cptcoveff){ |
void prevbackforecast(char fileres[], double ***prevacurrent, double anback1, double mback1, double jback1, double ageminpar, double agemax, double dateprev1, double dateprev2, int mobilav, double bage, double fage, int firstpass, int lastpass, double anback2, double p[], int cptcoveff){ |
/* back1, year, month, day of starting backection |
/* back1, year, month, day of starting backection |
agemin, agemax range of age |
agemin, agemax range of age |
dateprev1 dateprev2 range of dates during which prevalence is computed |
dateprev1 dateprev2 range of dates during which prevalence is computed |
anback2 year of en of backection (same day and month as back1). |
anback2 year of end of backprojection (same day and month as back1). |
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prevacurrent and prev are prevalences. |
*/ |
*/ |
int yearp, stepsize, hstepm, nhstepm, j, k, cptcod, i, h, i1, k4, nres=0; |
int yearp, stepsize, hstepm, nhstepm, j, k, cptcod, i, h, i1, k4, nres=0; |
double agec; /* generic age */ |
double agec; /* generic age */ |
Line 8304 void prevbackforecast(char fileres[], do
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Line 8308 void prevbackforecast(char fileres[], do
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fprintf(ficresfb,"#****** Routine prevbackforecast **\n"); |
fprintf(ficresfb,"#****** Routine prevbackforecast **\n"); |
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/* if (h==(int)(YEARM*yearp)){ */ |
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/* for(cptcov=1, k=0;cptcov<=i1;cptcov++){ */ |
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/* for(cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){ */ |
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/* k=k+1; */ |
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for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
for(k=1; k<=i1;k++){ |
for(k=1; k<=i1;k++){ |
if(i1 != 1 && TKresult[nres]!= k) |
if(i1 != 1 && TKresult[nres]!= k) |
Line 8333 void prevbackforecast(char fileres[], do
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Line 8333 void prevbackforecast(char fileres[], do
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/* for (yearp=0; yearp<=(anproj2-anproj1);yearp +=stepsize) { */ |
/* for (yearp=0; yearp<=(anproj2-anproj1);yearp +=stepsize) { */ |
fprintf(ficresfb,"\n"); |
fprintf(ficresfb,"\n"); |
fprintf(ficresfb,"\n# Back Forecasting at date %.lf/%.lf/%.lf ",jback1,mback1,anback1+yearp); |
fprintf(ficresfb,"\n# Back Forecasting at date %.lf/%.lf/%.lf ",jback1,mback1,anback1+yearp); |
printf("\n# Back Forecasting at date %.lf/%.lf/%.lf ",jback1,mback1,anback1+yearp); |
/* printf("\n# Back Forecasting at date %.lf/%.lf/%.lf ",jback1,mback1,anback1+yearp); */ |
/* for (agec=fage; agec>=(ageminpar-1); agec--){ */ |
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/* nhstepm=(int) rint((agelim-agec)*YEARM/stepm); */ |
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for (agec=bage; agec<=agemax-1; agec++){ /* testing */ |
for (agec=bage; agec<=agemax-1; agec++){ /* testing */ |
/* We compute bij at age agec over nhstepm, nhstepm decreases when agec increases because of agemax;*/ |
/* We compute bij at age agec over nhstepm, nhstepm decreases when agec increases because of agemax;*/ |
nhstepm=(int) rint((agec-agelim)*YEARM/stepm); |
nhstepm=(int) rint((agec-agelim)*YEARM/stepm); |
Line 8360 void prevbackforecast(char fileres[], do
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Line 8358 void prevbackforecast(char fileres[], do
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ppij=0.;ppi=0.; |
ppij=0.;ppi=0.; |
for(j=1; j<=nlstate;j++) { |
for(j=1; j<=nlstate;j++) { |
/* if (mobilav==1) */ |
/* if (mobilav==1) */ |
ppij=ppij+p3mat[i][j][h]*mobaverage[(int)agec][j][k]; |
ppij=ppij+p3mat[i][j][h]*prevacurrent[(int)agec][j][k]; |
ppi=ppi+mobaverage[(int)agec][j][k]; |
ppi=ppi+prevacurrent[(int)agec][j][k]; |
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/* ppij=ppij+p3mat[i][j][h]*mobaverage[(int)agec][j][k]; */ |
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/* ppi=ppi+mobaverage[(int)agec][j][k]; */ |
/* else { */ |
/* else { */ |
/* ppij=ppij+p3mat[i][j][h]*probs[(int)(agec)][i][k]; */ |
/* ppij=ppij+p3mat[i][j][h]*probs[(int)(agec)][i][k]; */ |
/* } */ |
/* } */ |
Line 8386 void prevbackforecast(char fileres[], do
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Line 8386 void prevbackforecast(char fileres[], do
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} |
} |
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/* Variance of prevalence limit: varprlim */ |
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void varprlim(char fileresu[], int nresult, double ***prevacurrent, int mobilavproj, double bage, double fage, double **prlim, int *ncvyearp, double ftolpl, double p[], double **matcov, double *delti, int stepm, int cptcoveff){ |
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/*------- Variance of period (stable) prevalence------*/ |
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char fileresvpl[FILENAMELENGTH]; |
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FILE *ficresvpl; |
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double **oldm, **savm; |
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double **varpl; /* Variances of prevalence limits by age */ |
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int i1, k, nres, j ; |
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strcpy(fileresvpl,"VPL_"); |
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strcat(fileresvpl,fileresu); |
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if((ficresvpl=fopen(fileresvpl,"w"))==NULL) { |
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printf("Problem with variance of period (stable) prevalence resultfile: %s\n", fileresvpl); |
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exit(0); |
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} |
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printf("Computing Variance-covariance of period (stable) prevalence: file '%s' ...", fileresvpl);fflush(stdout); |
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fprintf(ficlog, "Computing Variance-covariance of period (stable) prevalence: file '%s' ...", fileresvpl);fflush(ficlog); |
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/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
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for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
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i1=pow(2,cptcoveff); |
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if (cptcovn < 1){i1=1;} |
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for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
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for(k=1; k<=i1;k++){ |
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if(i1 != 1 && TKresult[nres]!= k) |
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continue; |
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fprintf(ficresvpl,"\n#****** "); |
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printf("\n#****** "); |
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fprintf(ficlog,"\n#****** "); |
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for(j=1;j<=cptcoveff;j++) { |
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fprintf(ficresvpl,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
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fprintf(ficlog,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
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printf("V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
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} |
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for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
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printf(" V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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fprintf(ficresvpl," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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fprintf(ficlog," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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} |
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fprintf(ficresvpl,"******\n"); |
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printf("******\n"); |
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fprintf(ficlog,"******\n"); |
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varpl=matrix(1,nlstate,(int) bage, (int) fage); |
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oldm=oldms;savm=savms; |
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varprevlim(fileresvpl, ficresvpl, varpl, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl, ncvyearp, k, strstart, nres); |
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free_matrix(varpl,1,nlstate,(int) bage, (int)fage); |
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/*}*/ |
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} |
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fclose(ficresvpl); |
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printf("done variance-covariance of period prevalence\n");fflush(stdout); |
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fprintf(ficlog,"done variance-covariance of period prevalence\n");fflush(ficlog); |
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} |
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/* Variance of back prevalence: varbprlim */ |
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void varbprlim(char fileresu[], int nresult, double ***prevacurrent, int mobilavproj, double bage, double fage, double **bprlim, int *ncvyearp, double ftolpl, double p[], double **matcov, double *delti, int stepm, int cptcoveff){ |
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/*------- Variance of back (stable) prevalence------*/ |
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char fileresvbl[FILENAMELENGTH]; |
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FILE *ficresvbl; |
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double **oldm, **savm; |
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double **varbpl; /* Variances of back prevalence limits by age */ |
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int i1, k, nres, j ; |
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strcpy(fileresvbl,"VBL_"); |
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strcat(fileresvbl,fileresu); |
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if((ficresvbl=fopen(fileresvbl,"w"))==NULL) { |
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printf("Problem with variance of back (stable) prevalence resultfile: %s\n", fileresvbl); |
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exit(0); |
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} |
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printf("Computing Variance-covariance of back (stable) prevalence: file '%s' ...", fileresvbl);fflush(stdout); |
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fprintf(ficlog, "Computing Variance-covariance of back (stable) prevalence: file '%s' ...", fileresvbl);fflush(ficlog); |
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i1=pow(2,cptcoveff); |
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if (cptcovn < 1){i1=1;} |
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for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
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for(k=1; k<=i1;k++){ |
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if(i1 != 1 && TKresult[nres]!= k) |
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continue; |
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fprintf(ficresvbl,"\n#****** "); |
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printf("\n#****** "); |
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fprintf(ficlog,"\n#****** "); |
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for(j=1;j<=cptcoveff;j++) { |
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fprintf(ficresvbl,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
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fprintf(ficlog,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
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printf("V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
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} |
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for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
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printf(" V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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fprintf(ficresvbl," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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fprintf(ficlog," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
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} |
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fprintf(ficresvbl,"******\n"); |
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printf("******\n"); |
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fprintf(ficlog,"******\n"); |
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varbpl=matrix(1,nlstate,(int) bage, (int) fage); |
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oldm=oldms;savm=savms; |
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varbrevlim(fileresvbl, ficresvbl, varbpl, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, bprlim, ftolpl, mobilavproj, ncvyearp, k, strstart, nres); |
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free_matrix(varbpl,1,nlstate,(int) bage, (int)fage); |
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/*}*/ |
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} |
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fclose(ficresvbl); |
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printf("done variance-covariance of back prevalence\n");fflush(stdout); |
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fprintf(ficlog,"done variance-covariance of back prevalence\n");fflush(ficlog); |
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} /* End of varbprlim */ |
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/************** Forecasting *****not tested NB*************/ |
/************** Forecasting *****not tested NB*************/ |
/* void populforecast(char fileres[], double anpyram,double mpyram,double jpyram,double ageminpar, double agemax,double dateprev1, double dateprev2s, int mobilav, double agedeb, double fage, int popforecast, char popfile[], double anpyram1,double p[], int i2){ */ |
/* void populforecast(char fileres[], double anpyram,double mpyram,double jpyram,double ageminpar, double agemax,double dateprev1, double dateprev2s, int mobilav, double agedeb, double fage, int popforecast, char popfile[], double anpyram1,double p[], int i2){ */ |
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Line 10494 int main(int argc, char *argv[])
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Line 10611 int main(int argc, char *argv[])
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double *delti; /* Scale */ |
double *delti; /* Scale */ |
double ***eij, ***vareij; |
double ***eij, ***vareij; |
double **varpl; /* Variances of prevalence limits by age */ |
double **varpl; /* Variances of prevalence limits by age */ |
double **varbpl; /* Variances of back prevalence limits by age */ |
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double *epj, vepp; |
double *epj, vepp; |
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double dateprev1, dateprev2,jproj1=1,mproj1=1,anproj1=2000,jproj2=1,mproj2=1,anproj2=2000; |
double dateprev1, dateprev2,jproj1=1,mproj1=1,anproj1=2000,jproj2=1,mproj2=1,anproj2=2000; |
Line 11994 Please run with mle=-1 to get a correct
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Line 12111 Please run with mle=-1 to get a correct
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k=1; |
k=1; |
varprob(optionfilefiname, matcov, p, delti, nlstate, bage, fage,k,Tvar,nbcode, ncodemax,strstart); |
varprob(optionfilefiname, matcov, p, delti, nlstate, bage, fage,k,Tvar,nbcode, ncodemax,strstart); |
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/* Prevalence for each covariates in probs[age][status][cov] */ |
/* Prevalence for each covariate combination in probs[age][status][cov] */ |
probs= ma3x(1,AGESUP,1,nlstate+ndeath, 1,ncovcombmax); |
probs= ma3x(AGEINF,AGESUP,1,nlstate+ndeath, 1,ncovcombmax); |
for(i=1;i<=AGESUP;i++) |
for(i=AGEINF;i<=AGESUP;i++) |
for(j=1;j<=nlstate+ndeath;j++) /* ndeath is useless but a necessity to be compared with mobaverages */ |
for(j=1;j<=nlstate+ndeath;j++) /* ndeath is useless but a necessity to be compared with mobaverages */ |
for(k=1;k<=ncovcombmax;k++) |
for(k=1;k<=ncovcombmax;k++) |
probs[i][j][k]=0.; |
probs[i][j][k]=0.; |
prevalence(probs, ageminpar, agemaxpar, s, agev, nlstate, imx, Tvar, nbcode, ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass); |
prevalence(probs, ageminpar, agemaxpar, s, agev, nlstate, imx, Tvar, nbcode, |
|
ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass); |
if (mobilav!=0 ||mobilavproj !=0 ) { |
if (mobilav!=0 ||mobilavproj !=0 ) { |
mobaverages= ma3x(1, AGESUP,1,nlstate+ndeath, 1,ncovcombmax); |
mobaverages= ma3x(AGEINF, AGESUP,1,nlstate+ndeath, 1,ncovcombmax); |
for(i=1;i<=AGESUP;i++) |
for(i=AGEINF;i<=AGESUP;i++) |
for(j=1;j<=nlstate+ndeath;j++) |
for(j=1;j<=nlstate+ndeath;j++) |
for(k=1;k<=ncovcombmax;k++) |
for(k=1;k<=ncovcombmax;k++) |
mobaverages[i][j][k]=0.; |
mobaverages[i][j][k]=0.; |
Line 12015 Please run with mle=-1 to get a correct
|
Line 12133 Please run with mle=-1 to get a correct
|
fprintf(ficlog," Error in movingaverage mobilav=%d\n",mobilav); |
fprintf(ficlog," Error in movingaverage mobilav=%d\n",mobilav); |
printf(" Error in movingaverage mobilav=%d\n",mobilav); |
printf(" Error in movingaverage mobilav=%d\n",mobilav); |
} |
} |
} |
} else if (mobilavproj !=0) { |
/* else if(mobilavproj==-1){ /\* Forcing raw observed prevalences *\/ */ |
|
/* for(i=1;i<=AGESUP;i++) */ |
|
/* for(j=1;j<=nlstate;j++) */ |
|
/* for(k=1;k<=ncovcombmax;k++) */ |
|
/* mobaverages[i][j][k]=probs[i][j][k]; */ |
|
/* /\* /\\* Prevalence for each covariates in probs[age][status][cov] *\\/ *\/ */ |
|
/* /\* prevalence(probs, ageminpar, agemaxpar, s, agev, nlstate, imx, Tvar, nbcode, ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass); *\/ */ |
|
/* } */ |
|
else if (mobilavproj !=0) { |
|
printf("Movingaveraging projected observed prevalence\n"); |
printf("Movingaveraging projected observed prevalence\n"); |
fprintf(ficlog,"Movingaveraging projected observed prevalence\n"); |
fprintf(ficlog,"Movingaveraging projected observed prevalence\n"); |
if (movingaverage(probs, ageminpar, agemaxpar, mobaverage, mobilavproj)!=0){ |
if (movingaverage(probs, ageminpar, agemaxpar, mobaverage, mobilavproj)!=0){ |
fprintf(ficlog," Error in movingaverage mobilavproj=%d\n",mobilavproj); |
fprintf(ficlog," Error in movingaverage mobilavproj=%d\n",mobilavproj); |
printf(" Error in movingaverage mobilavproj=%d\n",mobilavproj); |
printf(" Error in movingaverage mobilavproj=%d\n",mobilavproj); |
} |
} |
|
}else{ |
|
printf("Internal error moving average\n"); |
|
fflush(stdout); |
|
exit(1); |
} |
} |
}/* end if moving average */ |
}/* end if moving average */ |
|
|
/*---------- Forecasting ------------------*/ |
/*---------- Forecasting ------------------*/ |
/*if((stepm == 1) && (strcmp(model,".")==0)){*/ |
|
if(prevfcast==1){ |
if(prevfcast==1){ |
/* if(stepm ==1){*/ |
/* if(stepm ==1){*/ |
prevforecast(fileresu, anproj1, mproj1, jproj1, agemin, agemax, dateprev1, dateprev2, mobilavproj, bage, fage, firstpass, lastpass, anproj2, p, cptcoveff); |
prevforecast(fileresu, anproj1, mproj1, jproj1, agemin, agemax, dateprev1, dateprev2, mobilavproj, mobaverage, bage, fage, firstpass, lastpass, anproj2, p, cptcoveff); |
} |
} |
|
|
|
/* Backcasting */ |
if(backcast==1){ |
if(backcast==1){ |
ddnewms=matrix(1,nlstate+ndeath,1,nlstate+ndeath); |
ddnewms=matrix(1,nlstate+ndeath,1,nlstate+ndeath); |
ddoldms=matrix(1,nlstate+ndeath,1,nlstate+ndeath); |
ddoldms=matrix(1,nlstate+ndeath,1,nlstate+ndeath); |
Line 12048 Please run with mle=-1 to get a correct
|
Line 12162 Please run with mle=-1 to get a correct
|
/*--------------- Back Prevalence limit (period or stable prevalence) --------------*/ |
/*--------------- Back Prevalence limit (period or stable prevalence) --------------*/ |
|
|
bprlim=matrix(1,nlstate,1,nlstate); |
bprlim=matrix(1,nlstate,1,nlstate); |
|
|
back_prevalence_limit(p, bprlim, ageminpar, agemaxpar, ftolpl, &ncvyear, dateprev1, dateprev2, firstpass, lastpass, mobilavproj); |
back_prevalence_limit(p, bprlim, ageminpar, agemaxpar, ftolpl, &ncvyear, dateprev1, dateprev2, firstpass, lastpass, mobilavproj); |
fclose(ficresplb); |
fclose(ficresplb); |
|
|
hBijx(p, bage, fage, mobaverage); |
hBijx(p, bage, fage, mobaverage); |
fclose(ficrespijb); |
fclose(ficrespijb); |
/* free_matrix(bprlim,1,nlstate,1,nlstate); /\*here or after loop ? *\/ */ |
|
|
|
prevbackforecast(fileresu, mobaverage, anback1, mback1, jback1, agemin, agemax, dateprev1, dateprev2, mobilavproj, |
prevbackforecast(fileresu, mobaverage, anback1, mback1, jback1, agemin, agemax, dateprev1, dateprev2, |
bage, fage, firstpass, lastpass, anback2, p, cptcoveff); |
mobilavproj, bage, fage, firstpass, lastpass, anback2, p, cptcoveff); |
|
varbprlim(fileresu, nresult, mobaverage, mobilavproj, bage, fage, bprlim, &ncvyear, ftolpl, p, matcov, delti, stepm, cptcoveff); |
|
|
/*------- Variance of back (stable) prevalence------*/ |
|
|
|
strcpy(fileresvbl,"VBL_"); |
free_matrix(bprlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
strcat(fileresvbl,fileresu); |
|
if((ficresvbl=fopen(fileresvbl,"w"))==NULL) { |
|
printf("Problem with variance of back (stable) prevalence resultfile: %s\n", fileresvbl); |
|
exit(0); |
|
} |
|
printf("Computing Variance-covariance of back (stable) prevalence: file '%s' ...", fileresvbl);fflush(stdout); |
|
fprintf(ficlog, "Computing Variance-covariance of back (stable) prevalence: file '%s' ...", fileresvbl);fflush(ficlog); |
|
|
|
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
|
|
|
i1=pow(2,cptcoveff); |
|
if (cptcovn < 1){i1=1;} |
|
|
|
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
|
for(k=1; k<=i1;k++){ |
|
if(i1 != 1 && TKresult[nres]!= k) |
|
continue; |
|
fprintf(ficresvbl,"\n#****** "); |
|
printf("\n#****** "); |
|
fprintf(ficlog,"\n#****** "); |
|
for(j=1;j<=cptcoveff;j++) { |
|
fprintf(ficresvbl,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
|
fprintf(ficlog,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
|
printf("V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
|
} |
|
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
|
printf(" V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
fprintf(ficresvbl," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
fprintf(ficlog," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
} |
|
fprintf(ficresvbl,"******\n"); |
|
printf("******\n"); |
|
fprintf(ficlog,"******\n"); |
|
|
|
varbpl=matrix(1,nlstate,(int) bage, (int) fage); |
|
oldm=oldms;savm=savms; |
|
|
|
varbrevlim(fileres, varbpl, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, bprlim, ftolpl, mobilavproj, &ncvyear, k, strstart, nres); |
|
free_matrix(varbpl,1,nlstate,(int) bage, (int)fage); |
|
/*}*/ |
|
} |
|
|
|
fclose(ficresvbl); |
|
printf("done variance-covariance of back prevalence\n");fflush(stdout); |
|
fprintf(ficlog,"done variance-covariance of back prevalence\n");fflush(ficlog); |
|
|
|
free_matrix(ddnewms, 1, nlstate+ndeath, 1, nlstate+ndeath); |
free_matrix(ddnewms, 1, nlstate+ndeath, 1, nlstate+ndeath); |
free_matrix(ddsavms, 1, nlstate+ndeath, 1, nlstate+ndeath); |
free_matrix(ddsavms, 1, nlstate+ndeath, 1, nlstate+ndeath); |
free_matrix(ddoldms, 1, nlstate+ndeath, 1, nlstate+ndeath); |
free_matrix(ddoldms, 1, nlstate+ndeath, 1, nlstate+ndeath); |
} |
} /* end Backcasting */ |
free_matrix(bprlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
|
|
|
|
|
/* ------ Other prevalence ratios------------ */ |
/* ------ Other prevalence ratios------------ */ |
Line 12165 Please run with mle=-1 to get a correct
|
Line 12231 Please run with mle=-1 to get a correct
|
fclose(ficreseij); |
fclose(ficreseij); |
printf("done evsij\n");fflush(stdout); |
printf("done evsij\n");fflush(stdout); |
fprintf(ficlog,"done evsij\n");fflush(ficlog); |
fprintf(ficlog,"done evsij\n");fflush(ficlog); |
|
|
|
|
/*---------- State-specific expectancies and variances ------------*/ |
/*---------- State-specific expectancies and variances ------------*/ |
|
|
|
|
strcpy(filerest,"T_"); |
strcpy(filerest,"T_"); |
strcat(filerest,fileresu); |
strcat(filerest,fileresu); |
if((ficrest=fopen(filerest,"w"))==NULL) { |
if((ficrest=fopen(filerest,"w"))==NULL) { |
Line 12177 Please run with mle=-1 to get a correct
|
Line 12243 Please run with mle=-1 to get a correct
|
} |
} |
printf("Computing Total Life expectancies with their standard errors: file '%s' ...\n", filerest); fflush(stdout); |
printf("Computing Total Life expectancies with their standard errors: file '%s' ...\n", filerest); fflush(stdout); |
fprintf(ficlog,"Computing Total Life expectancies with their standard errors: file '%s' ...\n", filerest); fflush(ficlog); |
fprintf(ficlog,"Computing Total Life expectancies with their standard errors: file '%s' ...\n", filerest); fflush(ficlog); |
|
|
|
|
strcpy(fileresstde,"STDE_"); |
strcpy(fileresstde,"STDE_"); |
strcat(fileresstde,fileresu); |
strcat(fileresstde,fileresu); |
if((ficresstdeij=fopen(fileresstde,"w"))==NULL) { |
if((ficresstdeij=fopen(fileresstde,"w"))==NULL) { |
Line 12206 Please run with mle=-1 to get a correct
|
Line 12270 Please run with mle=-1 to get a correct
|
printf(" Computing Variance-covariance of State-specific Expectancies: file '%s' ... ", fileresv);fflush(stdout); |
printf(" Computing Variance-covariance of State-specific Expectancies: file '%s' ... ", fileresv);fflush(stdout); |
fprintf(ficlog," Computing Variance-covariance of State-specific Expectancies: file '%s' ... ", fileresv);fflush(ficlog); |
fprintf(ficlog," Computing Variance-covariance of State-specific Expectancies: file '%s' ... ", fileresv);fflush(ficlog); |
|
|
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
|
|
|
i1=pow(2,cptcoveff); /* Number of combination of dummy covariates */ |
i1=pow(2,cptcoveff); /* Number of combination of dummy covariates */ |
if (cptcovn < 1){i1=1;} |
if (cptcovn < 1){i1=1;} |
|
|
Line 12270 Please run with mle=-1 to get a correct
|
Line 12331 Please run with mle=-1 to get a correct
|
vareij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
vareij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
pstamp(ficrest); |
pstamp(ficrest); |
|
|
|
epj=vector(1,nlstate+1); |
for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ |
for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ |
oldm=oldms;savm=savms; /* ZZ Segmentation fault */ |
oldm=oldms;savm=savms; /* ZZ Segmentation fault */ |
cptcod= 0; /* To be deleted */ |
cptcod= 0; /* To be deleted */ |
Line 12286 Please run with mle=-1 to get a correct
|
Line 12347 Please run with mle=-1 to get a correct
|
for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i); |
for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i); |
fprintf(ficrest,"\n"); |
fprintf(ficrest,"\n"); |
/* printf("Which p?\n"); for(i=1;i<=npar;i++)printf("p[i=%d]=%lf,",i,p[i]);printf("\n"); */ |
/* printf("Which p?\n"); for(i=1;i<=npar;i++)printf("p[i=%d]=%lf,",i,p[i]);printf("\n"); */ |
epj=vector(1,nlstate+1); |
|
printf("Computing age specific period (stable) prevalences in each health state \n"); |
printf("Computing age specific period (stable) prevalences in each health state \n"); |
fprintf(ficlog,"Computing age specific period (stable) prevalences in each health state \n"); |
fprintf(ficlog,"Computing age specific period (stable) prevalences in each health state \n"); |
for(age=bage; age <=fage ;age++){ |
for(age=bage; age <=fage ;age++){ |
Line 12324 Please run with mle=-1 to get a correct
|
Line 12384 Please run with mle=-1 to get a correct
|
fprintf(ficrest,"\n"); |
fprintf(ficrest,"\n"); |
} |
} |
} /* End vpopbased */ |
} /* End vpopbased */ |
|
free_vector(epj,1,nlstate+1); |
free_ma3x(eij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
free_ma3x(eij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
free_ma3x(vareij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
free_ma3x(vareij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
free_vector(epj,1,nlstate+1); |
|
printf("done selection\n");fflush(stdout); |
printf("done selection\n");fflush(stdout); |
fprintf(ficlog,"done selection\n");fflush(ficlog); |
fprintf(ficlog,"done selection\n");fflush(ficlog); |
|
|
/*}*/ |
|
} /* End k selection */ |
} /* End k selection */ |
|
|
printf("done State-specific expectancies\n");fflush(stdout); |
printf("done State-specific expectancies\n");fflush(stdout); |
fprintf(ficlog,"done State-specific expectancies\n");fflush(ficlog); |
fprintf(ficlog,"done State-specific expectancies\n");fflush(ficlog); |
|
|
/*------- Variance of period (stable) prevalence------*/ |
/* variance-covariance of period prevalence*/ |
|
varprlim(fileresu, nresult, mobaverage, mobilavproj, bage, fage, prlim, &ncvyear, ftolpl, p, matcov, delti, stepm, cptcoveff); |
strcpy(fileresvpl,"VPL_"); |
|
strcat(fileresvpl,fileresu); |
|
if((ficresvpl=fopen(fileresvpl,"w"))==NULL) { |
|
printf("Problem with variance of period (stable) prevalence resultfile: %s\n", fileresvpl); |
|
exit(0); |
|
} |
|
printf("Computing Variance-covariance of period (stable) prevalence: file '%s' ...", fileresvpl);fflush(stdout); |
|
fprintf(ficlog, "Computing Variance-covariance of period (stable) prevalence: file '%s' ...", fileresvpl);fflush(ficlog); |
|
|
|
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
|
|
|
i1=pow(2,cptcoveff); |
|
if (cptcovn < 1){i1=1;} |
|
|
|
for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
|
for(k=1; k<=i1;k++){ |
|
if(i1 != 1 && TKresult[nres]!= k) |
|
continue; |
|
fprintf(ficresvpl,"\n#****** "); |
|
printf("\n#****** "); |
|
fprintf(ficlog,"\n#****** "); |
|
for(j=1;j<=cptcoveff;j++) { |
|
fprintf(ficresvpl,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
|
fprintf(ficlog,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
|
printf("V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
|
} |
|
for (j=1; j<= nsq; j++){ /* For each selected (single) quantitative value */ |
|
printf(" V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
fprintf(ficresvpl," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
fprintf(ficlog," V%d=%f ",Tvqresult[nres][j],Tqresult[nres][j]); |
|
} |
|
fprintf(ficresvpl,"******\n"); |
|
printf("******\n"); |
|
fprintf(ficlog,"******\n"); |
|
|
|
varpl=matrix(1,nlstate,(int) bage, (int) fage); |
|
oldm=oldms;savm=savms; |
|
varprevlim(fileres, varpl, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl, &ncvyear, k, strstart, nres); |
|
free_matrix(varpl,1,nlstate,(int) bage, (int)fage); |
|
/*}*/ |
|
} |
|
|
|
fclose(ficresvpl); |
|
printf("done variance-covariance of period prevalence\n");fflush(stdout); |
|
fprintf(ficlog,"done variance-covariance of period prevalence\n");fflush(ficlog); |
|
|
|
|
|
free_vector(weight,1,n); |
free_vector(weight,1,n); |
Line 12402 Please run with mle=-1 to get a correct
|
Line 12415 Please run with mle=-1 to get a correct
|
|
|
/*---------- End : free ----------------*/ |
/*---------- End : free ----------------*/ |
if (mobilav!=0 ||mobilavproj !=0) |
if (mobilav!=0 ||mobilavproj !=0) |
free_ma3x(mobaverages,1, AGESUP,1,nlstate+ndeath, 1,ncovcombmax); /* We need to have a squared matrix with prevalence of the dead! */ |
free_ma3x(mobaverages,AGEINF, AGESUP,1,nlstate+ndeath, 1,ncovcombmax); /* We need to have a squared matrix with prevalence of the dead! */ |
free_ma3x(probs,1,AGESUP,1,nlstate+ndeath, 1,ncovcombmax); |
free_ma3x(probs,AGEINF,AGESUP,1,nlstate+ndeath, 1,ncovcombmax); |
free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
} /* mle==-3 arrives here for freeing */ |
} /* mle==-3 arrives here for freeing */ |
Line 12420 Please run with mle=-1 to get a correct
|
Line 12433 Please run with mle=-1 to get a correct
|
/*free_vector(delti,1,npar);*/ |
/*free_vector(delti,1,npar);*/ |
free_ma3x(delti3,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
free_ma3x(delti3,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
free_matrix(agev,1,maxwav,1,imx); |
free_matrix(agev,1,maxwav,1,imx); |
|
free_ma3x(paramstart,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
free_ma3x(param,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
free_ma3x(param,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
|
|
free_ivector(ncodemax,1,NCOVMAX); |
free_ivector(ncodemax,1,NCOVMAX); |