- Graphs
");
@@ -4546,21 +4567,37 @@ fprintf(fichtm," \n
- Graphs
}
fprintf(fichtm," ************\n
");
}
+ /* aij, bij */
+ fprintf(fichtm,"
- Logit model, for example: logit(pij)=log(pij/pii)= aij+ bij age + V1 age + etc. as a function of age: %s_%d-1.svg
\
+![](\"%s_%d-1.svg\")
",subdirf2(optionfilefiname,"PE_"),jj1,subdirf2(optionfilefiname,"PE_"),jj1,subdirf2(optionfilefiname,"PE_"),jj1);
/* Pij */
- fprintf(fichtm,"
- Pij or Conditional probabilities to be observed in state j being in state i, %d (stepm) months before: %s%d_1.svg
\
-![](\"%s%d_1.svg\")
",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1);
+ fprintf(fichtm,"
\n- Pij or Conditional probabilities to be observed in state j being in state i, %d (stepm) months before: %s_%d-2.svg
\
+![](\"%s_%d-2.svg\")
",stepm,subdirf2(optionfilefiname,"PE_"),jj1,subdirf2(optionfilefiname,"PE_"),jj1,subdirf2(optionfilefiname,"PE_"),jj1);
/* Quasi-incidences */
- fprintf(fichtm,"
- Pij or Conditional probabilities to be observed in state j being in state i %d (stepm) months\
- before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too: %s%d_2.svg
\
-![](\"%s%d_2.svg\")
",stepm,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1,subdirf2(optionfilefiname,"pe"),jj1);
- /* Period (stable) prevalence in each health state */
- for(cpt=1; cpt<=nlstate;cpt++){
- fprintf(fichtm,"
- Convergence to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. %s%d_%d.svg
\
-![](\"%s%d_%d.svg\")
", cpt, cpt, nlstate, subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1,subdirf2(optionfilefiname,"p"),cpt,jj1);
- }
+ fprintf(fichtm,"
\n- Iij or Conditional probabilities to be observed in state j being in state i %d (stepm) months\
+ before but expressed in per year i.e. quasi incidences if stepm is small and probabilities too,\
+ incidence (rates) are the limit when h tends to zero of the ratio of the probability hPij \
+divided by h: hPij/h : %s_%d-3.svg
\
+![](\"%s_%d-3.svg\")
",stepm,subdirf2(optionfilefiname,"PE_"),jj1,subdirf2(optionfilefiname,"PE_"),jj1,subdirf2(optionfilefiname,"PE_"),jj1);
+ /* Survival functions (period) in state j */
+ for(cpt=1; cpt<=nlstate;cpt++){
+ fprintf(fichtm,"
\n- Survival functions in state %d. Or probability to survive in state %d being in state (1 to %d) at different ages. %s%d_%d.svg
\
+![](\"%s_%d-%d.svg\")
", cpt, cpt, nlstate, subdirf2(optionfilefiname,"LIJ_"),cpt,jj1,subdirf2(optionfilefiname,"LIJ_"),cpt,jj1,subdirf2(optionfilefiname,"LIJ_"),cpt,jj1);
+ }
+ /* State specific survival functions (period) */
+ for(cpt=1; cpt<=nlstate;cpt++){
+ fprintf(fichtm,"
\n- Survival functions from state %d in any different live states and total.\
+ Or probability to survive in various states (1 to %d) being in state %d at different ages.\
+ %s%d_%d.svg
", cpt, nlstate, cpt, subdirf2(optionfilefiname,"LIJT_"),cpt,jj1,subdirf2(optionfilefiname,"LIJT_"),cpt,jj1,subdirf2(optionfilefiname,"LIJT_"),cpt,jj1);
+ }
+ /* Period (stable) prevalence in each health state */
+ for(cpt=1; cpt<=nlstate;cpt++){
+ fprintf(fichtm,"
\n- Convergence to period (stable) prevalence in state %d. Or probability to be in state %d being in state (1 to %d) at different ages. %s%d_%d.svg
\
+", cpt, cpt, nlstate, subdirf2(optionfilefiname,"P_"),cpt,jj1,subdirf2(optionfilefiname,"P_"),cpt,jj1,subdirf2(optionfilefiname,"P_"),cpt,jj1);
+ }
for(cpt=1; cpt<=nlstate;cpt++) {
- fprintf(fichtm,"\n
- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) : %s%d%d.svg
\
-![](\"%s%d%d.svg\")
",cpt,nlstate,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1,subdirf2(optionfilefiname,"exp"),cpt,jj1);
+ fprintf(fichtm,"\n
- Life expectancy by health state (%d) at initial age and its decomposition into health expectancies in each alive state (1 to %d) (or area under each survival functions): %s%d%d.svg
\
+![](\"%s_%d%d.svg\")
",cpt,nlstate,subdirf2(optionfilefiname,"EXP_"),cpt,jj1,subdirf2(optionfilefiname,"EXP_"),cpt,jj1,subdirf2(optionfilefiname,"EXP_"),cpt,jj1);
}
/* } /\* end i1 *\/ */
}/* End k1 */
@@ -4579,31 +4616,31 @@ covariance matrix of the one-step probab
See page 'Matrix of variance-covariance of one-step probabilities' below. \n", rfileres,rfileres);
fprintf(fichtm," - Standard deviation of one-step probabilities: %s
\n",
- subdirf2(fileres,"prob"),subdirf2(fileres,"prob"));
+ subdirf2(fileresu,"PROB_"),subdirf2(fileresu,"PROB_"));
fprintf(fichtm,"\
- Variance-covariance of one-step probabilities: %s
\n",
- subdirf2(fileres,"probcov"),subdirf2(fileres,"probcov"));
+ subdirf2(fileresu,"PROBCOV_"),subdirf2(fileresu,"PROBCOV_"));
fprintf(fichtm,"\
- Correlation matrix of one-step probabilities: %s
\n",
- subdirf2(fileres,"probcor"),subdirf2(fileres,"probcor"));
+ subdirf2(fileresu,"PROBCOR_"),subdirf2(fileresu,"PROBCOR_"));
fprintf(fichtm,"\
- Variances and covariances of health expectancies by age and initial health status (cov(eij,ekl)(estepm=%2d months): \
%s
\n ",
- estepm,subdirf2(fileres,"cve"),subdirf2(fileres,"cve"));
+ estepm,subdirf2(fileresu,"CVE_"),subdirf2(fileresu,"CVE_"));
fprintf(fichtm,"\
- (a) Health expectancies by health status at initial age (eij) and standard errors (in parentheses) (b) life expectancies and standard errors (ei.=ei1+ei2+...)(estepm=%2d months): \
%s
\n",
- estepm,subdirf2(fileres,"stde"),subdirf2(fileres,"stde"));
+ estepm,subdirf2(fileresu,"STDE_"),subdirf2(fileresu,"STDE_"));
fprintf(fichtm,"\
- Variances and covariances of health expectancies by age. Status (i) based health expectancies (in state j), eij are weighted by the period prevalences in each state i (if popbased=1, an additional computation is done using the cross-sectional prevalences, i.e population based) (estepm=%d months): %s
\n",
- estepm, subdirf2(fileres,"v"),subdirf2(fileres,"v"));
+ estepm, subdirf2(fileresu,"V_"),subdirf2(fileresu,"V_"));
fprintf(fichtm,"\
- Total life expectancy and total health expectancies to be spent in each health state e.j with their standard errors (if popbased=1, an additional computation is done using the cross-sectional prevalences, i.e population based) (estepm=%d months): %s
\n",
- estepm, subdirf2(fileres,"t"),subdirf2(fileres,"t"));
+ estepm, subdirf2(fileresu,"T_"),subdirf2(fileresu,"T_"));
fprintf(fichtm,"\
- Standard deviation of period (stable) prevalences: %s
\n",\
- subdirf2(fileres,"vpl"),subdirf2(fileres,"vpl"));
+ subdirf2(fileresu,"VPL_"),subdirf2(fileresu,"VPL_"));
/* if(popforecast==1) fprintf(fichtm,"\n */
/* - Prevalences forecasting: f%s
\n */
@@ -4630,14 +4667,14 @@ See page 'Matrix of variance-covariance
for(cpt=1; cpt<=nlstate;cpt++) {
fprintf(fichtm,"
- Observed (cross-sectional) and period (incidence based) \
prevalence (with 95%% confidence interval) in state (%d): %s%d_%d.svg
\
-",cpt,subdirf2(optionfilefiname,"v"),cpt,jj1,subdirf2(optionfilefiname,"v"),cpt,jj1);
+",cpt,subdirf2(optionfilefiname,"V_"),cpt,jj1,subdirf2(optionfilefiname,"V_"),cpt,jj1);
}
fprintf(fichtm,"\n
- Total life expectancy by age and \
health expectancies in states (1) and (2). If popbased=1 the smooth (due to the model) \
true period expectancies (those weighted with period prevalences are also\
drawn in addition to the population based expectancies computed using\
- observed and cahotic prevalences: %s%d.svg
\
-![](\"%s%d.svg\")
",subdirf2(optionfilefiname,"e"),jj1,subdirf2(optionfilefiname,"e"),jj1);
+ observed and cahotic prevalences: %s_%d.svg
\
+![](\"%s_%d.svg\")
",subdirf2(optionfilefiname,"E_"),jj1,subdirf2(optionfilefiname,"E_"),jj1);
/* } /\* end i1 *\/ */
}/* End k1 */
fprintf(fichtm,"
");
@@ -4645,11 +4682,12 @@ true period expectancies (those weighted
}
/******************* Gnuplot file **************/
-void printinggnuplot(char fileres[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){
+void printinggnuplot(char fileresu[], char optionfilefiname[], double ageminpar, double agemaxpar, double fage , char pathc[], double p[]){
char dirfileres[132],optfileres[132];
int cpt=0,k1=0,i=0,k=0,j=0,jk=0,k2=0,k3=0,ij=0,l=0;
int ng=0;
+ int vpopbased;
/* if((ficgp=fopen(optionfilegnuplot,"a"))==NULL) { */
/* printf("Problem with file %s",optionfilegnuplot); */
/* fprintf(ficlog,"Problem with file %s",optionfilegnuplot); */
@@ -4663,73 +4701,78 @@ void printinggnuplot(char fileres[], cha
strcpy(dirfileres,optionfilefiname);
strcpy(optfileres,"vpl");
/* 1eme*/
- fprintf(ficgp,"\n# 1st: Period (stable) prevalence with CI: 'vpl' files\n");
+ fprintf(ficgp,"\n# 1st: Period (stable) prevalence with CI: 'VPL_' files\n");
for (cpt=1; cpt<= nlstate ; cpt ++) {
for (k1=1; k1<= m ; k1 ++) { /* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */
- fprintf(ficgp,"\nset out \"%s%d_%d.svg\" \n",subdirf2(optionfilefiname,"v"),cpt,k1);
- fprintf(ficgp,"\n#set out \"v%s%d_%d.svg\" \n",optionfilefiname,cpt,k1);
+ fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"V_"),cpt,k1);
+ fprintf(ficgp,"\n#set out \"V_%s_%d-%d.svg\" \n",optionfilefiname,cpt,k1);
fprintf(ficgp,"set xlabel \"Age\" \n\
set ylabel \"Probability\" \n\
set ter svg size 640, 480\n\
-plot [%.f:%.f] \"%s\" every :::%d::%d u 1:2 \"%%lf",ageminpar,fage,subdirf2(fileres,"vpl"),k1-1,k1-1);
+plot [%.f:%.f] \"%s\" every :::%d::%d u 1:2 \"%%lf",ageminpar,fage,subdirf2(fileresu,"VPL_"),k1-1,k1-1);
for (i=1; i<= nlstate ; i ++) {
if (i==cpt) fprintf(ficgp," %%lf (%%lf)");
else fprintf(ficgp," %%*lf (%%*lf)");
}
- fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1);
+ fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"%%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1);
for (i=1; i<= nlstate ; i ++) {
if (i==cpt) fprintf(ficgp," %%lf (%%lf)");
else fprintf(ficgp," %%*lf (%%*lf)");
}
- fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1);
+ fprintf(ficgp,"\" t\"95%% CI\" w l lt 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"%%lf",subdirf2(fileresu,"VPL_"),k1-1,k1-1);
for (i=1; i<= nlstate ; i ++) {
if (i==cpt) fprintf(ficgp," %%lf (%%lf)");
else fprintf(ficgp," %%*lf (%%*lf)");
}
- fprintf(ficgp,"\" t\"\" w l lt 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l lt 2",subdirf2(fileres,"p"),k1-1,k1-1,2+4*(cpt-1));
- }
- }
+ fprintf(ficgp,"\" t\"\" w l lt 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l lt 2",subdirf2(fileresu,"P_"),k1-1,k1-1,2+4*(cpt-1));
+ fprintf(ficgp,"\nset out \n");
+ } /* k1 */
+ } /* cpt */
/*2 eme*/
fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files\n");
for (k1=1; k1<= m ; k1 ++) {
- fprintf(ficgp,"\nset out \"%s%d.svg\" \n",subdirf2(optionfilefiname,"e"),k1);
- fprintf(ficgp,"set ylabel \"Years\" \nset ter svg size 640, 480\nplot [%.f:%.f] ",ageminpar,fage);
-
- for (i=1; i<= nlstate+1 ; i ++) {
- k=2*i;
- fprintf(ficgp,"\"%s\" every :::%d::%d u 1:2 \"%%lf",subdirf2(fileres,"t"),k1-1,k1-1);
- for (j=1; j<= nlstate+1 ; j ++) {
- if (j==i) fprintf(ficgp," %%lf (%%lf)");
- else fprintf(ficgp," %%*lf (%%*lf)");
- }
- if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l ,");
- else fprintf(ficgp,"\" t\"LE in state (%d)\" w l ,",i-1);
- fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2-$3*2) \"%%lf",subdirf2(fileres,"t"),k1-1,k1-1);
- for (j=1; j<= nlstate+1 ; j ++) {
- if (j==i) fprintf(ficgp," %%lf (%%lf)");
- else fprintf(ficgp," %%*lf (%%*lf)");
- }
- fprintf(ficgp,"\" t\"\" w l lt 0,");
- fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"%%lf",subdirf2(fileres,"t"),k1-1,k1-1);
- for (j=1; j<= nlstate+1 ; j ++) {
- if (j==i) fprintf(ficgp," %%lf (%%lf)");
- else fprintf(ficgp," %%*lf (%%*lf)");
- }
- if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 0");
- else fprintf(ficgp,"\" t\"\" w l lt 0,");
- }
- }
-
+ fprintf(ficgp,"\nset out \"%s_%d.svg\" \n",subdirf2(optionfilefiname,"E_"),k1);
+ for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/
+ if(vpopbased==0)
+ fprintf(ficgp,"set ylabel \"Years\" \nset ter svg size 640, 480\nplot [%.f:%.f] ",ageminpar,fage);
+ else
+ fprintf(ficgp,"\nreplot ");
+ for (i=1; i<= nlstate+1 ; i ++) {
+ k=2*i;
+ fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ?$4 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1, vpopbased);
+ for (j=1; j<= nlstate+1 ; j ++) {
+ if (j==i) fprintf(ficgp," %%lf (%%lf)");
+ else fprintf(ficgp," %%*lf (%%*lf)");
+ }
+ if (i== 1) fprintf(ficgp,"\" t\"TLE\" w l lt %d, \\\n",i);
+ else fprintf(ficgp,"\" t\"LE in state (%d)\" w l lt %d, \\\n",i-1,i+1);
+ fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4-$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased);
+ for (j=1; j<= nlstate+1 ; j ++) {
+ if (j==i) fprintf(ficgp," %%lf (%%lf)");
+ else fprintf(ficgp," %%*lf (%%*lf)");
+ }
+ fprintf(ficgp,"\" t\"\" w l lt 0,");
+ fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2==%d && $4!=0 ? $4+$5*2 : 1/0) \"%%lf %%lf %%lf",subdirf2(fileresu,"T_"),k1-1,k1-1,vpopbased);
+ for (j=1; j<= nlstate+1 ; j ++) {
+ if (j==i) fprintf(ficgp," %%lf (%%lf)");
+ else fprintf(ficgp," %%*lf (%%*lf)");
+ }
+ if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 0");
+ else fprintf(ficgp,"\" t\"\" w l lt 0,\\\n");
+ } /* state */
+ } /* vpopbased */
+ fprintf(ficgp,"\nset out;set out \"%s_%d.svg\"; replot; set out; \n",subdirf2(optionfilefiname,"E_"),k1); /* Buggy gnuplot */
+ } /* k1 */
/*3eme*/
for (k1=1; k1<= m ; k1 ++) {
for (cpt=1; cpt<= nlstate ; cpt ++) {
/* k=2+nlstate*(2*cpt-2); */
k=2+(nlstate+1)*(cpt-1);
- fprintf(ficgp,"\nset out \"%s%d%d.svg\" \n",subdirf2(optionfilefiname,"exp"),cpt,k1);
+ fprintf(ficgp,"\nset out \"%s_%d%d.svg\" \n",subdirf2(optionfilefiname,"EXP_"),cpt,k1);
fprintf(ficgp,"set ter svg size 640, 480\n\
-plot [%.f:%.f] \"%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",ageminpar,fage,subdirf2(fileres,"e"),k1-1,k1-1,k,cpt);
+plot [%.f:%.f] \"%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",ageminpar,fage,subdirf2(fileresu,"E_"),k1-1,k1-1,k,cpt);
/*fprintf(ficgp,",\"e%s\" every :::%d::%d u 1:($%d-2*$%d) \"\%%lf ",fileres,k1-1,k1-1,k,k+1);
for (i=1; i<= nlstate*2 ; i ++) fprintf(ficgp,"\%%lf (\%%lf) ");
fprintf(ficgp,"\" t \"e%d1\" w l",cpt);
@@ -4739,39 +4782,98 @@ plot [%.f:%.f] \"%s\" every :::%d::%d u
*/
for (i=1; i< nlstate ; i ++) {
- fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+i,cpt,i+1);
+ fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+i,cpt,i+1);
/* fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d%d\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+2*i,cpt,i+1);*/
}
- fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d.\" w l",subdirf2(fileres,"e"),k1-1,k1-1,k+nlstate,cpt);
+ fprintf(ficgp," ,\"%s\" every :::%d::%d u 1:%d t \"e%d.\" w l",subdirf2(fileresu,"E_"),k1-1,k1-1,k+nlstate,cpt);
}
}
+ /* Survival functions (period) from state i in state j by initial state i */
+ for (k1=1; k1<= m ; k1 ++) { /* For each multivariate if any */
+ for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */
+ k=3;
+ fprintf(ficgp,"\n#\n#\n# Survival functions in state j : 'lij' files, cov=%d state=%d",k1, cpt);
+ fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"LIJ_"),cpt,k1);
+ fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability to be alive\" \n\
+set ter svg size 640, 480\n\
+unset log y\n\
+plot [%.f:%.f] ", ageminpar, agemaxpar);
+ for (i=1; i<= nlstate ; i ++){
+ if(i==1)
+ fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_"));
+ else
+ fprintf(ficgp,", '' ");
+ l=(nlstate+ndeath)*(i-1)+1;
+ fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l);
+ for (j=2; j<= nlstate+ndeath ; j ++)
+ fprintf(ficgp,"+$%d",k+l+j-1);
+ fprintf(ficgp,")) t \"l(%d,%d)\" w l",i,cpt);
+ } /* nlstate */
+ fprintf(ficgp,"\nset out\n");
+ } /* end cpt state*/
+ } /* end covariate */
+
+ /* Survival functions (period) from state i in state j by final state j */
+ for (k1=1; k1<= m ; k1 ++) { /* For each multivariate if any */
+ for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each inital state */
+ k=3;
+ fprintf(ficgp,"\n#\n#\n# Survival functions in state j and all livestates from state i by final state j: 'lij' files, cov=%d state=%d",k1, cpt);
+ fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"LIJT_"),cpt,k1);
+ fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability to be alive\" \n\
+set ter svg size 640, 480\n\
+unset log y\n\
+plot [%.f:%.f] ", ageminpar, agemaxpar);
+ for (j=1; j<= nlstate ; j ++){ /* Lived in state j */
+ if(j==1)
+ fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_"));
+ else
+ fprintf(ficgp,", '' ");
+ l=(nlstate+ndeath)*(cpt-1) +j;
+ fprintf(ficgp," u (($1==%d && (floor($2)%%5 == 0)) ? ($3):1/0):($%d",k1,k+l);
+ /* for (i=2; i<= nlstate+ndeath ; i ++) */
+ /* fprintf(ficgp,"+$%d",k+l+i-1); */
+ fprintf(ficgp,") t \"l(%d,%d)\" w l",cpt,j);
+ } /* nlstate */
+ fprintf(ficgp,", '' ");
+ fprintf(ficgp," u (($1==%d && (floor($2)%%5 == 0)) ? ($3):1/0):(",k1);
+ for (j=1; j<= nlstate ; j ++){ /* Lived in state j */
+ l=(nlstate+ndeath)*(cpt-1) +j;
+ if(j < nlstate)
+ fprintf(ficgp,"$%d +",k+l);
+ else
+ fprintf(ficgp,"$%d) t\"l(%d,.)\" w l",k+l,cpt);
+ }
+ fprintf(ficgp,"\nset out\n");
+ } /* end cpt state*/
+ } /* end covariate */
+
/* CV preval stable (period) */
for (k1=1; k1<= m ; k1 ++) { /* For each multivariate if any */
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */
k=3;
fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, cov=%d state=%d",k1, cpt);
- fprintf(ficgp,"\nset out \"%s%d_%d.svg\" \n",subdirf2(optionfilefiname,"p"),cpt,k1);
+ fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" \n",subdirf2(optionfilefiname,"P_"),cpt,k1);
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\
set ter svg size 640, 480\n\
unset log y\n\
plot [%.f:%.f] ", ageminpar, agemaxpar);
for (i=1; i<= nlstate ; i ++){
if(i==1)
- fprintf(ficgp,"\"%s\"",subdirf2(fileres,"pij"));
+ fprintf(ficgp,"\"%s\"",subdirf2(fileresu,"PIJ_"));
else
fprintf(ficgp,", '' ");
l=(nlstate+ndeath)*(i-1)+1;
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l+(cpt-1),k+l);
- for (j=1; j<= (nlstate-1) ; j ++)
- fprintf(ficgp,"+$%d",k+l+j);
+ for (j=2; j<= nlstate ; j ++)
+ fprintf(ficgp,"+$%d",k+l+j-1);
fprintf(ficgp,")) t \"prev(%d,%d)\" w l",i,cpt);
} /* nlstate */
- fprintf(ficgp,"\n");
+ fprintf(ficgp,"\nset out\n");
} /* end cpt state*/
} /* end covariate */
-
+
/* proba elementaires */
fprintf(ficgp,"\n##############\n#MLE estimated parameters\n#############\n");
for(i=1,jk=1; i <=nlstate; i++){
@@ -4790,7 +4892,7 @@ plot [%.f:%.f] ", ageminpar, agemaxpar)
fprintf(ficgp,"##############\n#\n");
/*goto avoid;*/
- fprintf(ficgp,"\n##############\n#Graphics of of probabilities or incidences\n#############\n");
+ fprintf(ficgp,"\n##############\n#Graphics of probabilities or incidences\n#############\n");
fprintf(ficgp,"# logi(p12/p11)=a12+b12*age+c12age*age+d12*V1+e12*V1*age\n");
fprintf(ficgp,"# logi(p12/p11)=p1 +p2*age +p3*age*age+ p4*V1+ p5*V1*age\n");
fprintf(ficgp,"# logi(p13/p11)=a13+b13*age+c13age*age+d13*V1+e13*V1*age\n");
@@ -4804,71 +4906,100 @@ plot [%.f:%.f] ", ageminpar, agemaxpar)
fprintf(ficgp,"# +exp(a13+b13*age+c13age*age+d13*V1+e13*V1*age))\n");
fprintf(ficgp,"# +exp(a14+b14*age+c14age*age+d14*V1+e14*V1*age)+...)\n");
fprintf(ficgp,"#\n");
- for(ng=1; ng<=2;ng++){ /* Number of graphics: first is probabilities second is incidence per year*/
+ for(ng=1; ng<=3;ng++){ /* Number of graphics: first is logit, 2nd is probabilities, third is incidences per year*/
fprintf(ficgp,"# ng=%d\n",ng);
fprintf(ficgp,"# jk=1 to 2^%d=%d\n",cptcoveff,m);
for(jk=1; jk <=m; jk++) {
fprintf(ficgp,"# jk=%d\n",jk);
- fprintf(ficgp,"\nset out \"%s%d_%d.svg\" \n",subdirf2(optionfilefiname,"pe"),jk,ng);
- if (ng==2)
+ fprintf(ficgp,"\nset out \"%s_%d-%d.svg\" ",subdirf2(optionfilefiname,"PE_"),jk,ng);
+ fprintf(ficgp,"\nset ter svg size 640, 480 ");
+ if (ng==1){
+ fprintf(ficgp,"\nset ylabel \"Value of the logit of the model\"\n"); /* exp(a12+b12*x) could be nice */
+ fprintf(ficgp,"\nunset log y");
+ }else if (ng==2){
+ fprintf(ficgp,"\nset ylabel \"Probability\"\n");
+ fprintf(ficgp,"\nset log y");
+ }else if (ng==3){
fprintf(ficgp,"\nset ylabel \"Quasi-incidence per year\"\n");
- else
- fprintf(ficgp,"\nset title \"Probability\"\n");
- fprintf(ficgp,"\nset ter svg size 640, 480\nset log y\nplot [%.f:%.f] ",ageminpar,agemaxpar);
+ fprintf(ficgp,"\nset log y");
+ }else
+ fprintf(ficgp,"\nunset title ");
+ fprintf(ficgp,"\nplot [%.f:%.f] ",ageminpar,agemaxpar);
i=1;
for(k2=1; k2<=nlstate; k2++) {
k3=i;
for(k=1; k<=(nlstate+ndeath); k++) {
if (k != k2){
- if(ng==2)
+ switch( ng) {
+ case 1:
if(nagesqr==0)
- fprintf(ficgp," %f*exp(p%d+p%d*x",YEARM/stepm,i,i+1);
+ fprintf(ficgp," p%d+p%d*x",i,i+1);
else /* nagesqr =1 */
- fprintf(ficgp," %f*exp(p%d+p%d*x+p%d*x*x",YEARM/stepm,i,i+1,i+1+nagesqr);
- else
+ fprintf(ficgp," p%d+p%d*x+p%d*x*x",i,i+1,i+1+nagesqr);
+ break;
+ case 2: /* ng=2 */
if(nagesqr==0)
fprintf(ficgp," exp(p%d+p%d*x",i,i+1);
else /* nagesqr =1 */
- fprintf(ficgp," exp(p%d+p%d*x+p%d*x*x",i,i+1,i+1+nagesqr);
+ fprintf(ficgp," exp(p%d+p%d*x+p%d*x*x",i,i+1,i+1+nagesqr);
+ break;
+ case 3:
+ if(nagesqr==0)
+ fprintf(ficgp," %f*exp(p%d+p%d*x",YEARM/stepm,i,i+1);
+ else /* nagesqr =1 */
+ fprintf(ficgp," %f*exp(p%d+p%d*x+p%d*x*x",YEARM/stepm,i,i+1,i+1+nagesqr);
+ break;
+ }
ij=1;/* To be checked else nbcode[0][0] wrong */
for(j=3; j <=ncovmodel-nagesqr; j++) {
/* printf("Tage[%d]=%d, j=%d\n", ij, Tage[ij], j); */
if(ij <=cptcovage) { /* Bug valgrind */
if((j-2)==Tage[ij]) { /* Bug valgrind */
- fprintf(ficgp,"+p%d*%d*x",i+j+nagesqr-1,nbcode[Tvar[j-2]][codtabm(jk,Tvar[j-2])]);
+ fprintf(ficgp,"+p%d*%d*x",i+j+nagesqr-1,nbcode[Tvar[j-2]][codtabm(jk,j-2)]);
+ /* fprintf(ficgp,"+p%d*%d*x",i+j+nagesqr-1,nbcode[Tvar[j-2]][codtabm(jk,Tvar[j-2])]); */
ij++;
}
}
else
fprintf(ficgp,"+p%d*%d",i+j+nagesqr-1,nbcode[Tvar[j-2]][codtabm(jk,j-2)]);
}
- fprintf(ficgp,")/(1");
+ if(ng != 1){
+ fprintf(ficgp,")/(1");
- for(k1=1; k1 <=nlstate; k1++){
- if(nagesqr==0)
- fprintf(ficgp,"+exp(p%d+p%d*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1);
- else /* nagesqr =1 */
- fprintf(ficgp,"+exp(p%d+p%d*x+p%d*x*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1,k3+(k1-1)*ncovmodel+1+nagesqr);
-
- ij=1;
- for(j=3; j <=ncovmodel-nagesqr; j++){
- if(ij <=cptcovage) { /* Bug valgrind */
- if((j-2)==Tage[ij]) { /* Bug valgrind */
- fprintf(ficgp,"+p%d*%d*x",k3+(k1-1)*ncovmodel+1+j-2+nagesqr,nbcode[Tvar[j-2]][codtabm(jk,Tvar[j-2])]);
- ij++;
+ for(k1=1; k1 <=nlstate; k1++){
+ if(nagesqr==0)
+ fprintf(ficgp,"+exp(p%d+p%d*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1);
+ else /* nagesqr =1 */
+ fprintf(ficgp,"+exp(p%d+p%d*x+p%d*x*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1,k3+(k1-1)*ncovmodel+1+nagesqr);
+
+ ij=1;
+ for(j=3; j <=ncovmodel-nagesqr; j++){
+ if(ij <=cptcovage) { /* Bug valgrind */
+ if((j-2)==Tage[ij]) { /* Bug valgrind */
+ fprintf(ficgp,"+p%d*%d*x",k3+(k1-1)*ncovmodel+1+j-2+nagesqr,nbcode[Tvar[j-2]][codtabm(jk,j-2)]);
+ /* fprintf(ficgp,"+p%d*%d*x",k3+(k1-1)*ncovmodel+1+j-2+nagesqr,nbcode[Tvar[j-2]][codtabm(jk,Tvar[j-2])]); */
+ ij++;
+ }
}
+ else
+ fprintf(ficgp,"+p%d*%d",k3+(k1-1)*ncovmodel+1+j-2+nagesqr,nbcode[Tvar[j-2]][codtabm(jk,j-2)]);
}
- else
- fprintf(ficgp,"+p%d*%d",k3+(k1-1)*ncovmodel+1+j-2+nagesqr,nbcode[Tvar[j-2]][codtabm(jk,j-2)]);
+ fprintf(ficgp,")");
}
fprintf(ficgp,")");
+ if(ng ==2)
+ fprintf(ficgp," t \"p%d%d\" ", k2,k);
+ else /* ng= 3 */
+ fprintf(ficgp," t \"i%d%d\" ", k2,k);
+ }else{ /* end ng <> 1 */
+ fprintf(ficgp," t \"logit(p%d%d)\" ", k2,k);
}
- fprintf(ficgp,") t \"p%d%d\" ", k2,k);
if ((k+k2)!= (nlstate*2+ndeath)) fprintf(ficgp,",");
i=i+ncovmodel;
}
} /* end k */
} /* end k2 */
+ fprintf(ficgp,"\n set out\n");
} /* end jk */
} /* end ng */
/* avoid: */
@@ -4936,8 +5067,8 @@ void prevforecast(char fileres[], double
agelim=AGESUP;
prevalence(probs, ageminpar, agemax, s, agev, nlstate, imx, Tvar, nbcode, ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass);
- strcpy(fileresf,"f");
- strcat(fileresf,fileres);
+ strcpy(fileresf,"F_");
+ strcat(fileresf,fileresu);
if((ficresf=fopen(fileresf,"w"))==NULL) {
printf("Problem with forecast resultfile: %s\n", fileresf);
fprintf(ficlog,"Problem with forecast resultfile: %s\n", fileresf);
@@ -5060,8 +5191,8 @@ void populforecast(char fileres[], doubl
prevalence(probs, ageminpar, agemax, s, agev, nlstate, imx, Tvar, nbcode, ncodemax, mint, anint, dateprev1, dateprev2, firstpass, lastpass);
- strcpy(filerespop,"pop");
- strcat(filerespop,fileres);
+ strcpy(filerespop,"POP_");
+ strcat(filerespop,fileresu);
if((ficrespop=fopen(filerespop,"w"))==NULL) {
printf("Problem with forecast resultfile: %s\n", filerespop);
fprintf(ficlog,"Problem with forecast resultfile: %s\n", filerespop);
@@ -5414,7 +5545,7 @@ double gompertz_f(const gsl_vector *v, v
#endif
/******************* Printing html file ***********/
-void printinghtmlmort(char fileres[], char title[], char datafile[], int firstpass, \
+void printinghtmlmort(char fileresu[], char title[], char datafile[], int firstpass, \
int lastpass, int stepm, int weightopt, char model[],\
int imx, double p[],double **matcov,double agemortsup){
int i,k;
@@ -5438,7 +5569,7 @@ fprintf(fichtm,"
![](\"%s%s.svg\")
![](\"varmuptjgr%s%s.svg\")
![](\"%s%d%1d%1d-%1d%1d.svg\")
",subdirf2(optionfilefiname,"varpijgr"), j1,k1,l1,k2,l2);
+ :![](\"%s_%d%1d%1d-%1d%1d.svg\")
",subdirf2(optionfilefiname,"VARPIJGR_"), j1,k1,l1,k2,l2);
fprintf(fichtmcov,"\n