--- imach/src/imach.c 2022/05/11 15:06:32 1.315 +++ imach/src/imach.c 2022/07/22 12:30:08 1.323 @@ -1,6 +1,34 @@ -/* $Id: imach.c,v 1.315 2022/05/11 15:06:32 brouard Exp $ +/* $Id: imach.c,v 1.323 2022/07/22 12:30:08 brouard Exp $ $State: Exp $ $Log: imach.c,v $ + Revision 1.323 2022/07/22 12:30:08 brouard + * imach.c (Module): Output of Wald test in the htm file and not only in the log. + + Revision 1.322 2022/07/22 12:27:48 brouard + * imach.c (Module): Output of Wald test in the htm file and not only in the log. + + Revision 1.321 2022/07/22 12:04:24 brouard + Summary: r28 + + * imach.c (Module): Output of Wald test in the htm file and not only in the log. + + Revision 1.320 2022/06/02 05:10:11 brouard + *** empty log message *** + + Revision 1.319 2022/06/02 04:45:11 brouard + * imach.c (Module): Adding the Wald tests from the log to the main + htm for better display of the maximum likelihood estimators. + + Revision 1.318 2022/05/24 08:10:59 brouard + * imach.c (Module): Some attempts to find a bug of wrong estimates + of confidencce intervals with product in the equation modelC + + Revision 1.317 2022/05/15 15:06:23 brouard + * imach.c (Module): Some minor improvements + + Revision 1.316 2022/05/11 15:11:31 brouard + Summary: r27 + Revision 1.315 2022/05/11 15:06:32 brouard *** empty log message *** @@ -1090,6 +1118,7 @@ Important routines #define POWELLNOF3INFF1TEST /* Skip test */ /* #define POWELLORIGINAL /\* Don't use Directest to decide new direction but original Powell test *\/ */ /* #define MNBRAKORIGINAL /\* Don't use mnbrak fix *\/ */ +/* #define FLATSUP *//* Suppresses directions where likelihood is flat */ #include #include @@ -1156,7 +1185,7 @@ typedef struct { #define NINTERVMAX 8 #define NLSTATEMAX 8 /**< Maximum number of live states (for func) */ #define NDEATHMAX 8 /**< Maximum number of dead states (for func) */ -#define NCOVMAX 20 /**< Maximum number of covariates, including generated covariates V1*V2 */ +#define NCOVMAX 30 /**< Maximum number of covariates, including generated covariates V1*V2 */ #define codtabm(h,k) (1 & (h-1) >> (k-1))+1 /*#define decodtabm(h,k,cptcoveff)= (h <= (1<> (k-1)) & 1) +1 : -1)*/ #define decodtabm(h,k,cptcoveff) (((h-1) >> (k-1)) & 1) +1 @@ -1180,12 +1209,12 @@ typedef struct { #define ODIRSEPARATOR '\\' #endif -/* $Id: imach.c,v 1.315 2022/05/11 15:06:32 brouard Exp $ */ +/* $Id: imach.c,v 1.323 2022/07/22 12:30:08 brouard Exp $ */ /* $State: Exp $ */ #include "version.h" char version[]=__IMACH_VERSION__; -char copyright[]="March 2021,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015-2020, Nihon University 2021, INED 2000-2021"; -char fullversion[]="$Revision: 1.315 $ $Date: 2022/05/11 15:06:32 $"; +char copyright[]="July 2022,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015-2020, Nihon University 2021-202, INED 2000-2022"; +char fullversion[]="$Revision: 1.323 $ $Date: 2022/07/22 12:30:08 $"; char strstart[80]; char optionfilext[10], optionfilefiname[FILENAMELENGTH]; int erreur=0, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings */ @@ -1366,19 +1395,48 @@ double ***cotvar; /* Time varying covari double ***cotqvar; /* Time varying quantitative covariate itqv */ double idx; int **nbcode, *Tvar; /**< model=V2 => Tvar[1]= 2 */ -/* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ -/*k 1 2 3 4 5 6 7 8 9 */ -/*Tvar[k]= 5 4 3 6 5 2 7 1 1 */ -/* Tndvar[k] 1 2 3 4 5 */ -/*TDvar 4 3 6 7 1 */ /* For outputs only; combination of dummies fixed or varying */ -/* Tns[k] 1 2 2 4 5 */ /* Number of single cova */ -/* TvarsD[k] 1 2 3 */ /* Number of single dummy cova */ -/* TvarsDind 2 3 9 */ /* position K of single dummy cova */ -/* TvarsQ[k] 1 2 */ /* Number of single quantitative cova */ -/* TvarsQind 1 6 */ /* position K of single quantitative cova */ -/* Tprod[i]=k 4 7 */ -/* Tage[i]=k 5 8 */ -/* */ +/* Some documentation */ + /* Design original data + * V1 V2 V3 V4 V5 V6 V7 V8 Weight ddb ddth d1st s1 V9 V10 V11 V12 s2 V9 V10 V11 V12 + * < ncovcol=6 > nqv=2 (V7 V8) dv dv dv qtv dv dv dvv qtv + * ntv=3 nqtv=1 + * cptcovn number of covariates (not including constant and age) = # of + plus 1 = 10+1=11 + * For time varying covariate, quanti or dummies + * cotqvar[wav][iv(1 to nqtv)][i]= [1][12][i]=(V12) quanti + * cotvar[wav][ntv+iv][i]= [3+(1 to nqtv)][i]=(V12) quanti + * cotvar[wav][iv(1 to ntv)][i]= [1][1][i]=(V9) dummies at wav 1 + * cotvar[wav][iv(1 to ntv)][i]= [1][2][i]=(V10) dummies at wav 1 + * covar[k,i], value of kth fixed covariate dummy or quanti : + * covar[1][i]= (V1), covar[4][i]=(V4), covar[8][i]=(V8) + * Model V2 + V1 + V3*age + V3 + V5*V6 + V7*V8 + V8*age + V8 + V9 + V9*age + V10 + * k= 1 2 3 4 5 6 7 8 9 10 11 + */ +/* According to the model, more columns can be added to covar by the product of covariates */ +/* ncovcol=1(Males=0 Females=1) nqv=1(raedyrs) ntv=2(withoutiadl=0 withiadl=1, witoutadl=0 withoutadl=1) nqtv=1(bmi) nlstate=3 ndeath=1 + # States 1=Coresidence, 2 Living alone, 3 Institution + # V1=sex, V2=raedyrs Quant Fixed, State=livarnb4..livarnb11, V3=iadl4..iald11, V4=adlw4..adlw11, V5=r4bmi..r11bmi +*/ +/* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ +/* k 1 2 3 4 5 6 7 8 9 */ +/*Typevar[k]= 0 0 0 2 1 0 2 1 0 *//*0 for simple covariate (dummy, quantitative,*/ + /* fixed or varying), 1 for age product, 2 for*/ + /* product */ +/*Dummy[k]= 1 0 0 1 3 1 1 2 0 *//*Dummy[k] 0=dummy (0 1), 1 quantitative */ + /*(single or product without age), 2 dummy*/ + /* with age product, 3 quant with age product*/ +/*Tvar[k]= 5 4 3 6 5 2 7 1 1 */ +/* nsd 1 2 3 */ /* Counting single dummies covar fixed or tv */ +/*TvarsD[nsd] 4 3 1 */ /* ID of single dummy cova fixed or timevary*/ +/*TvarsDind[k] 2 3 9 */ /* position K of single dummy cova */ +/* nsq 1 2 */ /* Counting single quantit tv */ +/* TvarsQ[k] 5 2 */ /* Number of single quantitative cova */ +/* TvarsQind 1 6 */ /* position K of single quantitative cova */ +/* Tprod[i]=k 1 2 */ /* Position in model of the ith prod without age */ +/* cptcovage 1 2 */ /* Counting cov*age in the model equation */ +/* Tage[cptcovage]=k 5 8 */ /* Position in the model of ith cov*age */ +/* Tvard[1][1]@4={4,3,1,2} V4*V3 V1*V2 */ /* Position in model of the ith prod without age */ +/* TvarF TvarF[1]=Tvar[6]=2, TvarF[2]=Tvar[7]=7, TvarF[3]=Tvar[9]=1 ID of fixed covariates or product V2, V1*V2, V1 */ +/* TvarFind; TvarFind[1]=6, TvarFind[2]=7, TvarFind[3]=9 *//* Inverse V2(6) is first fixed (single or prod) */ /* Type */ /* V 1 2 3 4 5 */ /* F F V V V */ @@ -1389,17 +1447,21 @@ int *TvarsDind; int *TvarsQ; int *TvarsQind; -#define MAXRESULTLINES 10 +#define MAXRESULTLINESPONE 10+1 int nresult=0; int parameterline=0; /* # of the parameter (type) line */ -int TKresult[MAXRESULTLINES]; -int Tresult[MAXRESULTLINES][NCOVMAX];/* For dummy variable , value (output) */ -int Tinvresult[MAXRESULTLINES][NCOVMAX];/* For dummy variable , value (output) */ -int Tvresult[MAXRESULTLINES][NCOVMAX]; /* For dummy variable , variable # (output) */ -double Tqresult[MAXRESULTLINES][NCOVMAX]; /* For quantitative variable , value (output) */ -double Tqinvresult[MAXRESULTLINES][NCOVMAX]; /* For quantitative variable , value (output) */ -int Tvqresult[MAXRESULTLINES][NCOVMAX]; /* For quantitative variable , variable # (output) */ - +int TKresult[MAXRESULTLINESPONE]; +int Tresult[MAXRESULTLINESPONE][NCOVMAX];/* For dummy variable , value (output) */ +int Tinvresult[MAXRESULTLINESPONE][NCOVMAX];/* For dummy variable , value (output) */ +int Tvresult[MAXRESULTLINESPONE][NCOVMAX]; /* For dummy variable , variable # (output) */ +double Tqresult[MAXRESULTLINESPONE][NCOVMAX]; /* For quantitative variable , value (output) */ +double Tqinvresult[MAXRESULTLINESPONE][NCOVMAX]; /* For quantitative variable , value (output) */ +int Tvqresult[MAXRESULTLINESPONE][NCOVMAX]; /* For quantitative variable , variable # (output) */ + +/* ncovcol=1(Males=0 Females=1) nqv=1(raedyrs) ntv=2(withoutiadl=0 withiadl=1, witoutadl=0 withoutadl=1) nqtv=1(bmi) nlstate=3 ndeath=1 + # States 1=Coresidence, 2 Living alone, 3 Institution + # V1=sex, V2=raedyrs Quant Fixed, State=livarnb4..livarnb11, V3=iadl4..iald11, V4=adlw4..adlw11, V5=r4bmi..r11bmi +*/ /* int *TDvar; /\**< TDvar[1]=4, TDvarF[2]=3, TDvar[3]=6 in V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 *\/ */ int *TvarF; /**< TvarF[1]=Tvar[6]=2, TvarF[2]=Tvar[7]=7, TvarF[3]=Tvar[9]=1 in V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ int *TvarFind; /**< TvarFind[1]=6, TvarFind[2]=7, Tvarind[3]=9 in V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ @@ -2256,10 +2318,10 @@ void linmin(double p[], double xi[], int #endif #ifdef LINMINORIGINAL #else - if(fb == fx){ /* Flat function in the direction */ - xmin=xx; + if(fb == fx){ /* Flat function in the direction */ + xmin=xx; *flat=1; - }else{ + }else{ *flat=0; #endif /*Flat mnbrak2 shift (*ax=0.000000000000, *fa=51626.272983130431), (*bx=-1.618034000000, *fb=51590.149499362531), (*cx=-4.236068025156, *fc=51590.149499362531) */ @@ -2317,10 +2379,10 @@ void linmin(double p[], double xi[], int /*************** powell ************************/ /* -Minimization of a function func of n variables. Input consists of an initial starting point -p[1..n] ; an initial matrix xi[1..n][1..n] , whose columns contain the initial set of di- -rections (usually the n unit vectors); and ftol , the fractional tolerance in the function value -such that failure to decrease by more than this amount on one iteration signals doneness. On +Minimization of a function func of n variables. Input consists in an initial starting point +p[1..n] ; an initial matrix xi[1..n][1..n] whose columns contain the initial set of di- +rections (usually the n unit vectors); and ftol, the fractional tolerance in the function value +such that failure to decrease by more than this amount in one iteration signals doneness. On output, p is set to the best point found, xi is the then-current direction set, fret is the returned function value at p , and iter is the number of iterations taken. The routine linmin is used. */ @@ -2345,12 +2407,6 @@ void powell(double p[], double **xi, int double fp,fptt; double *xits; int niterf, itmp; -#ifdef LINMINORIGINAL -#else - - flatdir=ivector(1,n); - for (j=1;j<=n;j++) flatdir[j]=0; -#endif pt=vector(1,n); ptt=vector(1,n); @@ -2474,14 +2530,14 @@ void powell(double p[], double **xi, int /* Convergence test will use last linmin estimation (fret) and compare former iteration (fp) */ /* But p and xit have been updated at the end of linmin, *fret corresponds to new p, xit */ /* New value of last point Pn is not computed, P(n-1) */ - for(j=1;j<=n;j++) { - if(flatdir[j] >0){ - printf(" p(%d)=%lf flat=%d ",j,p[j],flatdir[j]); - fprintf(ficlog," p(%d)=%lf flat=%d ",j,p[j],flatdir[j]); - } - /* printf("\n"); */ - /* fprintf(ficlog,"\n"); */ + for(j=1;j<=n;j++) { + if(flatdir[j] >0){ + printf(" p(%d)=%lf flat=%d ",j,p[j],flatdir[j]); + fprintf(ficlog," p(%d)=%lf flat=%d ",j,p[j],flatdir[j]); } + /* printf("\n"); */ + /* fprintf(ficlog,"\n"); */ + } /* if (2.0*fabs(fp-(*fret)) <= ftol*(fabs(fp)+fabs(*fret))) { /\* Did we reach enough precision? *\/ */ if (2.0*fabs(fp-(*fret)) <= ftol) { /* Did we reach enough precision? */ /* We could compare with a chi^2. chisquare(0.95,ddl=1)=3.84 */ @@ -2519,10 +2575,6 @@ void powell(double p[], double **xi, int } #endif -#ifdef LINMINORIGINAL -#else - free_ivector(flatdir,1,n); -#endif free_vector(xit,1,n); free_vector(xits,1,n); free_vector(ptt,1,n); @@ -2636,6 +2688,13 @@ void powell(double p[], double **xi, int } printf("\n"); fprintf(ficlog,"\n"); +#ifdef FLATSUP + free_vector(xit,1,n); + free_vector(xits,1,n); + free_vector(ptt,1,n); + free_vector(pt,1,n); + return; +#endif } #endif printf("Gaining to use new average direction of P0 P%d instead of biggest increase direction %d :\n",n,ibig); @@ -2720,23 +2779,28 @@ void powell(double p[], double **xi, int newm=savm; /* Covariates have to be included here again */ cov[2]=agefin; - if(nagesqr==1) - cov[3]= agefin*agefin;; + if(nagesqr==1){ + cov[3]= agefin*agefin; + } for (k=1; k<=nsd;k++) { /* For single dummy covariates only */ /* Here comes the value of the covariate 'ij' after renumbering k with single dummy covariates */ cov[2+nagesqr+TvarsDind[k]]=nbcode[TvarsD[k]][codtabm(ij,k)]; + /* cov[++k1]=nbcode[TvarsD[k]][codtabm(ij,k)]; */ /* printf("prevalim Dummy combi=%d k=%d TvarsD[%d]=V%d TvarsDind[%d]=%d nbcode=%d cov=%lf codtabm(%d,Tvar[%d])=%d \n",ij,k, k, TvarsD[k],k,TvarsDind[k],nbcode[TvarsD[k]][codtabm(ij,k)],cov[2+nagesqr+TvarsDind[k]], ij, k, codtabm(ij,k)); */ } for (k=1; k<=nsq;k++) { /* For single varying covariates only */ /* Here comes the value of quantitative after renumbering k with single quantitative covariates */ - cov[2+nagesqr+TvarsQind[k]]=Tqresult[nres][k]; + cov[2+nagesqr+TvarsQind[k]]=Tqresult[nres][k]; + /* cov[++k1]=Tqresult[nres][k]; */ /* printf("prevalim Quantitative k=%d TvarsQind[%d]=%d, TvarsQ[%d]=V%d,Tqresult[%d][%d]=%f\n",k,k,TvarsQind[k],k,TvarsQ[k],nres,k,Tqresult[nres][k]); */ } for (k=1; k<=cptcovage;k++){ /* For product with age */ - if(Dummy[Tvar[Tage[k]]]){ + if(Dummy[Tage[k]]==2){ /* dummy with age */ cov[2+nagesqr+Tage[k]]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; - } else{ - cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; + /* cov[++k1]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; */ + } else if(Dummy[Tage[k]]==3){ /* quantitative with age */ + cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; + /* cov[++k1]=Tqresult[nres][k]; */ } /* printf("prevalim Age combi=%d k=%d Tage[%d]=V%d Tqresult[%d][%d]=%f\n",ij,k,k,Tage[k],nres,k,Tqresult[nres][k]); */ } @@ -2745,14 +2809,18 @@ void powell(double p[], double **xi, int if(Dummy[Tvard[k][1]==0]){ if(Dummy[Tvard[k][2]==0]){ cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * nbcode[Tvard[k][2]][codtabm(ij,k)]; + /* cov[++k1]=nbcode[Tvard[k][1]][codtabm(ij,k)] * nbcode[Tvard[k][2]][codtabm(ij,k)]; */ }else{ cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * Tqresult[nres][k]; + /* cov[++k1]=nbcode[Tvard[k][1]][codtabm(ij,k)] * Tqresult[nres][k]; */ } }else{ if(Dummy[Tvard[k][2]==0]){ cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][2]][codtabm(ij,k)] * Tqinvresult[nres][Tvard[k][1]]; + /* cov[++k1]=nbcode[Tvard[k][2]][codtabm(ij,k)] * Tqinvresult[nres][Tvard[k][1]]; */ }else{ cov[2+nagesqr+Tprod[k]]=Tqinvresult[nres][Tvard[k][1]]* Tqinvresult[nres][Tvard[k][2]]; + /* cov[++k1]=Tqinvresult[nres][Tvard[k][1]]* Tqinvresult[nres][Tvard[k][2]]; */ } } } @@ -2761,7 +2829,7 @@ void powell(double p[], double **xi, int /*printf("ij=%d cov[3]=%lf \n",ij, cov[3]);*/ /* savm=pmij(pmmij,cov,ncovmodel,x,nlstate); */ /* out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); /\* Bug Valgrind *\/ */ - /* age and covariate values of ij are in 'cov' */ + /* age and covariate values of ij are in 'cov' */ out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); /* Bug Valgrind */ savm=oldm; @@ -2801,8 +2869,16 @@ void powell(double p[], double **xi, int if(!first){ first=1; printf("Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d). Others in log file only...\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); + fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); + }else if (first >=1 && first <10){ + fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); + first++; + }else if (first ==10){ + fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); + printf("Warning: the stable prevalence dit not converge. This warning came too often, IMaCh will stop notifying, even in its log file. Look at the graphs to appreciate the non convergence.\n"); + fprintf(ficlog,"Warning: the stable prevalence no convergence; too many cases, giving up noticing, even in log file\n"); + first++; } - fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); /* Try to lower 'ftol', for example from 1.e-8 to 6.e-9.\n", ftolpl, (int)age, (int)delaymax, (int)agefin, ncvloop, (int)age-(int)agefin); */ free_vector(min,1,nlstate); @@ -2876,8 +2952,9 @@ void powell(double p[], double **xi, int /* newm points to the allocated table savm passed by the function it can be written, savm could be reallocated */ /* Covariates have to be included here again */ cov[2]=agefin; - if(nagesqr==1) + if(nagesqr==1){ cov[3]= agefin*agefin;; + } for (k=1; k<=nsd;k++) { /* For single dummy covariates only */ /* Here comes the value of the covariate 'ij' after renumbering k with single dummy covariates */ cov[2+nagesqr+TvarsDind[k]]=nbcode[TvarsD[k]][codtabm(ij,k)]; @@ -2898,10 +2975,11 @@ void powell(double p[], double **xi, int /* /\* cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,Tvard[k][1])] * nbcode[Tvard[k][2]][codtabm(ij,Tvard[k][2])]; *\/ */ /* cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * nbcode[Tvard[k][2]][codtabm(ij,k)]; */ for (k=1; k<=cptcovage;k++){ /* For product with age */ - if(Dummy[Tvar[Tage[k]]]){ + /* if(Dummy[Tvar[Tage[k]]]== 2){ /\* dummy with age *\/ ERROR ???*/ + if(Dummy[Tage[k]]== 2){ /* dummy with age */ cov[2+nagesqr+Tage[k]]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; - } else{ - cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; + } else if(Dummy[Tage[k]]== 3){ /* quantitative with age */ + cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; } /* printf("prevalim Age combi=%d k=%d Tage[%d]=V%d Tqresult[%d][%d]=%f\n",ij,k,k,Tage[k],nres,k,Tqresult[nres][k]); */ } @@ -2971,7 +3049,7 @@ void powell(double p[], double **xi, int maxmax=0.; for(i=1; i<=nlstate; i++){ - meandiff[i]=(max[i]-min[i])/(max[i]+min[i])*2.; /* mean difference for each column */ + meandiff[i]=(max[i]-min[i])/(max[i]+min[i])*2.; /* mean difference for each column, could be nan! */ maxmax=FMAX(maxmax,meandiff[i]); /* printf("Back age= %d meandiff[%d]=%f, agefin=%d max[%d]=%f min[%d]=%f maxmax=%f\n", (int)age, i, meandiff[i],(int)agefin, i, max[i], i, min[i],maxmax); */ } /* i loop */ @@ -3105,7 +3183,9 @@ double **pmij(double **ps, double *cov, doldm=ddoldms; /* global pointers */ dnewm=ddnewms; dsavm=ddsavms; - + + /* Debug */ + /* printf("Bmij ij=%d, cov[2}=%f\n", ij, cov[2]); */ agefin=cov[2]; /* Bx = Diag(w_x) P_x Diag(Sum_i w^i_x p^ij_x */ /* bmij *//* age is cov[2], ij is included in cov, but we need for @@ -3325,29 +3405,53 @@ double ***hpxij(double ***po, int nhstep cov[1]=1.; agexact=age+((h-1)*hstepm + (d-1))*stepm/YEARM; /* age just before transition */ cov[2]=agexact; - if(nagesqr==1) + if(nagesqr==1){ cov[3]= agexact*agexact; + } for (k=1; k<=nsd;k++) { /* For single dummy covariates only */ - /* Here comes the value of the covariate 'ij' after renumbering k with single dummy covariates */ +/* Here comes the value of the covariate 'ij' after renumbering k with single dummy covariates */ + /* codtabm(ij,k) (1 & (ij-1) >> (k-1))+1 */ +/* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ +/* k 1 2 3 4 5 6 7 8 9 */ +/*Tvar[k]= 5 4 3 6 5 2 7 1 1 */ +/* nsd 1 2 3 */ /* Counting single dummies covar fixed or tv */ +/*TvarsD[nsd] 4 3 1 */ /* ID of single dummy cova fixed or timevary*/ +/*TvarsDind[k] 2 3 9 */ /* position K of single dummy cova */ cov[2+nagesqr+TvarsDind[k]]=nbcode[TvarsD[k]][codtabm(ij,k)]; /* printf("hpxij Dummy combi=%d k=%d TvarsD[%d]=V%d TvarsDind[%d]=%d nbcode=%d cov=%lf codtabm(%d,Tvar[%d])=%d \n",ij,k, k, TvarsD[k],k,TvarsDind[k],nbcode[TvarsD[k]][codtabm(ij,k)],cov[2+nagesqr+TvarsDind[k]], ij, k, codtabm(ij,k)); */ } for (k=1; k<=nsq;k++) { /* For single varying covariates only */ /* Here comes the value of quantitative after renumbering k with single quantitative covariates */ - cov[2+nagesqr+TvarsQind[k]]=Tqresult[nres][k]; + cov[2+nagesqr+TvarsQind[k]]=Tqresult[nres][k]; /* printf("hPxij Quantitative k=%d TvarsQind[%d]=%d, TvarsQ[%d]=V%d,Tqresult[%d][%d]=%f\n",k,k,TvarsQind[k],k,TvarsQ[k],nres,k,Tqresult[nres][k]); */ } - for (k=1; k<=cptcovage;k++){ - if(Dummy[Tvar[Tage[k]]]){ + for (k=1; k<=cptcovage;k++){ /* For product with age V1+V1*age +V4 +age*V3 */ + /* 1+2 Tage[1]=2 TVar[2]=1 Dummy[2]=2, Tage[2]=4 TVar[4]=3 Dummy[4]=3 quant*/ + /* */ + if(Dummy[Tage[k]]== 2){ /* dummy with age */ + /* if(Dummy[Tvar[Tage[k]]]== 2){ /\* dummy with age *\/ */ cov[2+nagesqr+Tage[k]]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; - } else{ - cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; + } else if(Dummy[Tage[k]]== 3){ /* quantitative with age */ + cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; } /* printf("hPxij Age combi=%d k=%d Tage[%d]=V%d Tqresult[%d][%d]=%f\n",ij,k,k,Tage[k],nres,k,Tqresult[nres][k]); */ } - for (k=1; k<=cptcovprod;k++){ /* */ + for (k=1; k<=cptcovprod;k++){ /* For product without age */ /* printf("hPxij Prod ij=%d k=%d Tprod[%d]=%d Tvard[%d][1]=V%d, Tvard[%d][2]=V%d\n",ij,k,k,Tprod[k], k,Tvard[k][1], k,Tvard[k][2]); */ - cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * nbcode[Tvard[k][2]][codtabm(ij,k)]; + /* cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * nbcode[Tvard[k][2]][codtabm(ij,k)]; */ + if(Dummy[Tvard[k][1]==0]){ + if(Dummy[Tvard[k][2]==0]){ + cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * nbcode[Tvard[k][2]][codtabm(ij,k)]; + }else{ + cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)] * Tqresult[nres][k]; + } + }else{ + if(Dummy[Tvard[k][2]==0]){ + cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][2]][codtabm(ij,k)] * Tqinvresult[nres][Tvard[k][1]]; + }else{ + cov[2+nagesqr+Tprod[k]]=Tqinvresult[nres][Tvard[k][1]]* Tqinvresult[nres][Tvard[k][2]]; + } + } } /* for (k=1; k<=cptcovn;k++) */ /* cov[2+nagesqr+k]=nbcode[Tvar[k]][codtabm(ij,k)]; */ @@ -3359,7 +3463,7 @@ double ***hpxij(double ***po, int nhstep /*printf("hxi cptcov=%d cptcode=%d\n",cptcov,cptcode);*/ /*printf("h=%d d=%d age=%f cov=%f\n",h,d,age,cov[2]);*/ - /* right multiplication of oldm by the current matrix */ + /* right multiplication of oldm by the current matrix */ out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, pmij(pmmij,cov,ncovmodel,x,nlstate)); /* if((int)age == 70){ */ @@ -3429,6 +3533,8 @@ double ***hbxij(double ***po, int nhstep cov[1]=1.; agexact=age-( (h-1)*hstepm + (d) )*stepm/YEARM; /* age just before transition, d or d-1? */ /* agexact=age+((h-1)*hstepm + (d-1))*stepm/YEARM; /\* age just before transition *\/ */ + /* Debug */ + /* printf("hBxij age=%lf, agexact=%lf\n", age, agexact); */ cov[2]=agexact; if(nagesqr==1) cov[3]= agexact*agexact; @@ -3443,10 +3549,11 @@ double ***hbxij(double ***po, int nhstep cov[2+nagesqr+TvarsQind[k]]=Tqresult[nres][k]; /* printf("hPxij Quantitative k=%d TvarsQind[%d]=%d, TvarsQ[%d]=V%d,Tqresult[%d][%d]=%f\n",k,k,TvarsQind[k],k,TvarsQ[k],nres,k,Tqresult[nres][k]); */ } - for (k=1; k<=cptcovage;k++){ /* Should start at cptcovn+1 */ - if(Dummy[Tvar[Tage[k]]]){ + for (k=1; k<=cptcovage;k++){ /* Should start at cptcovn+1 *//* For product with age */ + /* if(Dummy[Tvar[Tage[k]]]== 2){ /\* dummy with age error!!!*\/ */ + if(Dummy[Tage[k]]== 2){ /* dummy with age */ cov[2+nagesqr+Tage[k]]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; - } else{ + } else if(Dummy[Tage[k]]== 3){ /* quantitative with age */ cov[2+nagesqr+Tage[k]]=Tqresult[nres][k]; } /* printf("hBxij Age combi=%d k=%d Tage[%d]=V%d Tqresult[%d][%d]=%f\n",ij,k,k,Tage[k],nres,k,Tqresult[nres][k]); */ @@ -3548,11 +3655,16 @@ double func( double *x) */ ioffset=2+nagesqr ; /* Fixed */ - for (k=1; k<=ncovf;k++){ /* Simple and product fixed covariates without age* products */ - cov[ioffset+TvarFind[k]]=covar[Tvar[TvarFind[k]]][i];/* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1, only V1 is fixed (k=6)*/ + for (k=1; k<=ncovf;k++){ /* For each fixed covariate dummu or quant or prod */ + /* # V1=sex, V2=raedyrs Quant Fixed, State=livarnb4..livarnb11, V3=iadl4..iald11, V4=adlw4..adlw11, V5=r4bmi..r11bmi */ + /* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ + /* TvarF[1]=Tvar[6]=2, TvarF[2]=Tvar[7]=7, TvarF[3]=Tvar[9]=1 ID of fixed covariates or product V2, V1*V2, V1 */ + /* TvarFind; TvarFind[1]=6, TvarFind[2]=7, TvarFind[3]=9 *//* Inverse V2(6) is first fixed (single or prod) */ + cov[ioffset+TvarFind[k]]=covar[Tvar[TvarFind[k]]][i];/* V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1, only V1 is fixed (TvarFind[1]=6)*/ + /* V1*V2 (7) TvarFind[2]=7, TvarFind[3]=9 */ } /* In model V2+V1*V4+age*V3+V3*V2 Tvar[1] is V2, Tvar[2=V1*V4] - is 6, Tvar[3=age*V3] should not be computed because of age Tvar[4=V3*V2] + is 5, Tvar[3=age*V3] should not be computed because of age Tvar[4=V3*V2]=6 has been calculated etc */ /* For an individual i, wav[i] gives the number of effective waves */ /* We compute the contribution to Likelihood of each effective transition @@ -3564,8 +3676,8 @@ double func( double *x) meaning that decodemodel should be used cotvar[mw[mi+1][i]][TTvar[iv]][i] */ for(mi=1; mi<= wav[i]-1; mi++){ - for(k=1; k <= ncovv ; k++){ /* Varying covariates (single and product but no age )*/ - /* cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]][i]; */ + for(k=1; k <= ncovv ; k++){ /* Varying covariates in the model (single and product but no age )"V5+V4+V3+V4*V3+V5*age+V1*age+V1" +TvarVind 1,2,3,4(V4*V3) Tvar[1]@7{5, 4, 3, 6, 5, 1, 1 ; 6 because the created covar is after V5 and is 6, minus 1+1, 3,2,1,4 positions in cotvar*/ + /* cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]][i]; but where is the crossproduct? */ cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]-ncovcol-nqv][i]; } for (ii=1;ii<=nlstate+ndeath;ii++) @@ -3580,10 +3692,10 @@ double func( double *x) if(nagesqr==1) cov[3]= agexact*agexact; /* Should be changed here */ for (kk=1; kk<=cptcovage;kk++) { - if(!FixedV[Tvar[Tage[kk]]]) - cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; /* Tage[kk] gives the data-covariate associated with age */ - else - cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]-ncovcol-nqv][i]*agexact; + if(!FixedV[Tvar[Tage[kk]]]) + cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; /* Tage[kk] gives the data-covariate associated with age */ + else + cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]-ncovcol-nqv][i]*agexact; } out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, 1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate)); @@ -3691,8 +3803,13 @@ double func( double *x) } /* end of individual */ } else if(mle==2){ for (i=1,ipmx=0, sw=0.; i<=imx; i++){ - for (k=1; k<=cptcovn;k++) cov[2+nagesqr+k]=covar[Tvar[k]][i]; + ioffset=2+nagesqr ; + for (k=1; k<=ncovf;k++) + cov[ioffset+TvarFind[k]]=covar[Tvar[TvarFind[k]]][i]; for(mi=1; mi<= wav[i]-1; mi++){ + for(k=1; k <= ncovv ; k++){ + cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]-ncovcol-nqv][i]; + } for (ii=1;ii<=nlstate+ndeath;ii++) for (j=1;j<=nlstate+ndeath;j++){ oldm[ii][j]=(ii==j ? 1.0 : 0.0); @@ -4049,7 +4166,7 @@ void likelione(FILE *ficres,double p[], void mlikeli(FILE *ficres,double p[], int npar, int ncovmodel, int nlstate, double ftol, double (*func)(double [])) { - int i,j, iter=0; + int i,j,k, jk, jkk=0, iter=0; double **xi; double fret; double fretone; /* Only one call to likelihood */ @@ -4083,8 +4200,65 @@ void mlikeli(FILE *ficres,double p[], in if(j!=i)fprintf(ficrespow," p%1d%1d",i,j); fprintf(ficrespow,"\n"); #ifdef POWELL +#ifdef LINMINORIGINAL +#else /* LINMINORIGINAL */ + + flatdir=ivector(1,npar); + for (j=1;j<=npar;j++) flatdir[j]=0; +#endif /*LINMINORIGINAL */ + +#ifdef FLATSUP + powell(p,xi,npar,ftol,&iter,&fret,flatdir,func); + /* reorganizing p by suppressing flat directions */ + for(i=1, jk=1; i <=nlstate; i++){ + for(k=1; k <=(nlstate+ndeath); k++){ + if (k != i) { + printf("%d%d flatdir[%d]=%d",i,k,jk, flatdir[jk]); + if(flatdir[jk]==1){ + printf(" To be skipped %d%d flatdir[%d]=%d ",i,k,jk, flatdir[jk]); + } + for(j=1; j <=ncovmodel; j++){ + printf("%12.7f ",p[jk]); + jk++; + } + printf("\n"); + } + } + } +/* skipping */ + /* for(i=1, jk=1, jkk=1;(flatdir[jk]==0)&& (i <=nlstate); i++){ */ + for(i=1, jk=1, jkk=1;i <=nlstate; i++){ + for(k=1; k <=(nlstate+ndeath); k++){ + if (k != i) { + printf("%d%d flatdir[%d]=%d",i,k,jk, flatdir[jk]); + if(flatdir[jk]==1){ + printf(" To be skipped %d%d flatdir[%d]=%d jk=%d p[%d] ",i,k,jk, flatdir[jk],jk, jk); + for(j=1; j <=ncovmodel; jk++,j++){ + printf(" p[%d]=%12.7f",jk, p[jk]); + /*q[jjk]=p[jk];*/ + } + }else{ + printf(" To be kept %d%d flatdir[%d]=%d jk=%d q[%d]=p[%d] ",i,k,jk, flatdir[jk],jk, jkk, jk); + for(j=1; j <=ncovmodel; jk++,jkk++,j++){ + printf(" p[%d]=%12.7f=q[%d]",jk, p[jk],jkk); + /*q[jjk]=p[jk];*/ + } + } + printf("\n"); + } + fflush(stdout); + } + } + powell(p,xi,npar,ftol,&iter,&fret,flatdir,func); +#else /* FLATSUP */ powell(p,xi,npar,ftol,&iter,&fret,func); -#endif +#endif /* FLATSUP */ + +#ifdef LINMINORIGINAL +#else + free_ivector(flatdir,1,npar); +#endif /* LINMINORIGINAL*/ +#endif /* POWELL */ #ifdef NLOPT #ifdef NEWUOA @@ -4112,6 +4286,14 @@ void mlikeli(FILE *ficres,double p[], in } nlopt_destroy(opt); #endif +#ifdef FLATSUP + /* npared = npar -flatd/ncovmodel; */ + /* xired= matrix(1,npared,1,npared); */ + /* paramred= ma3x(1,nlstate,1,nlstate+ndeath-1,1,ncovmodel); */ + /* powell(pred,xired,npared,ftol,&iter,&fret,flatdir,func); */ + /* free_matrix(xire,1,npared,1,npared); */ +#else /* FLATSUP */ +#endif /* FLATSUP */ free_matrix(xi,1,npar,1,npar); fclose(ficrespow); printf("\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); @@ -4563,7 +4745,7 @@ void freqsummary(char fileres[], double Title=%s
Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=1+age+%s
\n",\ fileresphtm,version,fullversion,title,datafile,firstpass,lastpass,stepm, weightopt, model); } - fprintf(ficresphtm,"Current page is file %s
\n\n

Frequencies and prevalence by age at begin of transition and dummy covariate value at beginning of transition

\n",fileresphtm, fileresphtm); + fprintf(ficresphtm,"Current page is file %s
\n\n

Frequencies (weight=%d) and prevalence by age at begin of transition and dummy covariate value at beginning of transition

\n",fileresphtm, fileresphtm, weightopt); strcpy(fileresphtmfr,subdirfext(optionfilefiname,"PHTMFR_",".htm")); if((ficresphtmfr=fopen(fileresphtmfr,"w"))==NULL) { @@ -4573,11 +4755,11 @@ Title=%s
Datafile=%s Firstpass=%d La exit(70); } else{ fprintf(ficresphtmfr,"\nIMaCh PHTM_Frequency table %s\n %s
%s \ -
\n \ +,
\n \ Title=%s
Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=1+age+%s
\n",\ fileresphtmfr,version,fullversion,title,datafile,firstpass,lastpass,stepm, weightopt, model); } - fprintf(ficresphtmfr,"Current page is file %s
\n\n

Frequencies of all effective transitions of the model, by age at begin of transition, and covariate value at the begin of transition (if the covariate is a varying covariate)

Unknown status is -1
\n",fileresphtmfr, fileresphtmfr); + fprintf(ficresphtmfr,"Current page is file %s
\n\n

(weight=%d) frequencies of all effective transitions of the model, by age at begin of transition, and covariate value at the begin of transition (if the covariate is a varying covariate)

Unknown status is -1
\n",fileresphtmfr, fileresphtmfr,weightopt); y= vector(iagemin-AGEMARGE,iagemax+4+AGEMARGE); x= vector(iagemin-AGEMARGE,iagemax+4+AGEMARGE); @@ -4755,7 +4937,7 @@ Title=%s
Datafile=%s Firstpass=%d La /* } */ } /* end bool */ } /* end iind = 1 to imx */ - /* prop[s][age] is feeded for any initial and valid live state as well as + /* prop[s][age] is fed for any initial and valid live state as well as freq[s1][s2][age] at single age of beginning the transition, for a combination j1 */ @@ -5324,12 +5506,20 @@ void concatwav(int wav[], int **dh, int #ifdef UNKNOWNSTATUSNOTCONTRIBUTING break; #else - if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ /* case -2 (vital status unknown is warned later */ + if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ /* no death date and known date of interview, case -2 (vital status unknown is warned later */ if(firsthree == 0){ printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); firsthree=1; + }else if(firsthree >=1 && firsthree < 10){ + fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); + firsthree++; + }else if(firsthree == 10){ + printf("Information, too many Information flags: no more reported to log either\n"); + fprintf(ficlog,"Information, too many Information flags: no more reported to log either\n"); + firsthree++; + }else{ + firsthree++; } - fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); mw[++mi][i]=m; /* Valid transition with unknown status */ mli=m; } @@ -5402,7 +5592,10 @@ void concatwav(int wav[], int **dh, int } /* End individuals */ /* wav and mw are no more changed */ - + printf("Information, you have to check %d informations which haven't been logged!\n",firsthree); + fprintf(ficlog,"Information, you have to check %d informations which haven't been logged!\n",firsthree); + + for(i=1; i<=imx; i++){ for(mi=1; mi********** Variable "); - for (z1=1; z1<=cptcoveff; z1++) fprintf(fichtm, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,z1)]); + /* for (z1=1; z1<=cptcoveff; z1++) fprintf(fichtm, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,z1)]); */ + for (z1=1; z1<=cptcoveff; z1++) fprintf(fichtmcov, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,z1)]); fprintf(fichtmcov, "**********\n
"); fprintf(ficresprobcor, "\n#********** Variable "); @@ -6733,8 +6929,11 @@ To be simple, these graphs help to under */ /* nbcode[1][1]=0 nbcode[1][2]=1;*/ } - /* for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ - for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; + /* V2+V1+V4+V3*age Tvar[4]=3 ; V1+V2*age Tvar[2]=2; V1+V1*age Tvar[2]=1, Tage[1]=2 */ + /* ) p nbcode[Tvar[Tage[k]]][(1 & (ij-1) >> (k-1))+1] */ + /*for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ + for (k=1; k<=cptcovage;k++) + cov[2+Tage[k]+nagesqr]=nbcode[Tvar[Tage[k]]][codtabm(ij,k)]*cov[2]; for (k=1; k<=cptcovprod;k++) cov[2+nagesqr+Tprod[k]]=nbcode[Tvard[k][1]][codtabm(ij,k)]*nbcode[Tvard[k][2]][codtabm(ij,k)]; @@ -6945,12 +7144,12 @@ void printinghtml(char fileresu[], char double jprev1, double mprev1,double anprev1, double dateprev1, double dateprojd, double dateback1, \ double jprev2, double mprev2,double anprev2, double dateprev2, double dateprojf, double dateback2){ int jj1, k1, i1, cpt, k4, nres; - + /* In fact some results are already printed in fichtm which is open */ fprintf(fichtm,""); - fprintf(fichtm,"
  • model=1+age+%s\n \ -
", model); +/* fprintf(fichtm,"
  • model=1+age+%s\n \ */ +/*
", model); */ fprintf(fichtm,"