--- imach/src/imach.c 2001/05/02 17:50:24 1.7 +++ imach/src/imach.c 2002/02/20 17:05:44 1.14 @@ -8,7 +8,7 @@ Health expectancies are computed from the transistions observed between waves and are computed for each degree of severity of disability (number of life states). More degrees you consider, more time is necessary to - reach the Maximum Likelihood of the parameters involved in the model. + reach the Maximum Likelihood of the parameters involved in the model. The simplest model is the multinomial logistic model where pij is the probabibility to be observed in state j at the second wave conditional to be observed in state i at the first wave. Therefore the model is: @@ -22,7 +22,7 @@ delay between waves is not identical for each individual, or if some individual missed an interview, the information is not rounded or lost, but taken into account using an interpolation or extrapolation. - hPijx is the probability to be + hPijx is the probability to be observed in state i at age x+h conditional to the observed state i at age x. The delay 'h' can be split into an exact number (nh*stepm) of unobserved intermediate states. This elementary transition (by month or @@ -68,22 +68,24 @@ int nvar; -static int cptcov; -int cptcovn, cptcovage=0, cptcoveff=0; +int cptcovn, cptcovage=0, cptcoveff=0,cptcov; int npar=NPARMAX; int nlstate=2; /* Number of live states */ int ndeath=1; /* Number of dead states */ int ncovmodel, ncov; /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */ +int popbased=0, fprev,lprev; int *wav; /* Number of waves for this individuual 0 is possible */ int maxwav; /* Maxim number of waves */ +int jmin, jmax; /* min, max spacing between 2 waves */ int mle, weightopt; int **mw; /* mw[mi][i] is number of the mi wave for this individual */ int **dh; /* dh[mi][i] is number of steps between mi,mi+1 for this individual */ +double jmean; /* Mean space between 2 waves */ double **oldm, **newm, **savm; /* Working pointers to matrices */ double **oldms, **newms, **savms; /* Fixed working pointers to matrices */ -FILE *fic,*ficpar, *ficparo,*ficres, *ficrespl, *ficrespij, *ficrest; -FILE *ficgp, *fichtm; +FILE *fic,*ficpar, *ficparo,*ficres, *ficrespl, *ficrespij, *ficrest,*ficresf; +FILE *ficgp, *fichtm,*ficresprob; FILE *ficreseij; char filerese[FILENAMELENGTH]; FILE *ficresvij; @@ -126,7 +128,7 @@ int stepm; int m,nb; int *num, firstpass=0, lastpass=4,*cod, *ncodemax, *Tage; double **agev,*moisnais, *annais, *moisdc, *andc,**mint, **anint; -double **pmmij; +double **pmmij, ***probs, ***mobaverage; double *weight; int **s; /* Status */ @@ -666,7 +668,6 @@ double **prevalim(double **prlim, int nl cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; /*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ - /*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); @@ -693,7 +694,7 @@ double **prevalim(double **prlim, int nl } } -/*************** transition probabilities **********/ +/*************** transition probabilities ***************/ double **pmij(double **ps, double *cov, int ncovmodel, double *x, int nlstate ) { @@ -716,9 +717,11 @@ double **pmij(double **ps, double *cov, s2 += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc]; /*printf("Int j>i s1=%.17e, s2=%.17e %lx %lx\n",s1,s2,s1,s2);*/ } - ps[i][j]=s2; + ps[i][j]=(s2); } } + /*ps[3][2]=1;*/ + for(i=1; i<= nlstate; i++){ s1=0; for(j=1; ji) { printf(".%d%d",i,j);fflush(stdout); hess[i][j]=hessij(p,delti,i,j); - hess[j][i]=hess[i][j]; + hess[j][i]=hess[i][j]; + /*printf(" %lf ",hess[i][j]);*/ } } } @@ -1035,7 +1037,7 @@ double hessii( double x[], double delta, } } delti[theta]=delts; - return res; + return res; } @@ -1159,7 +1161,7 @@ void freqsummary(char fileres[], int ag char fileresp[FILENAMELENGTH]; pp=vector(1,nlstate); - + probs= ma3x(1,130 ,1,8, 1,8); strcpy(fileresp,"p"); strcat(fileresp,fileres); if((ficresp=fopen(fileresp,"w"))==NULL) { @@ -1175,7 +1177,8 @@ void freqsummary(char fileres[], int ag for(k1=1; k1<=j;k1++){ for(i1=1; i1<=ncodemax[k1];i1++){ j1++; - + /*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]); + scanf("%d", i);*/ for (i=-1; i<=nlstate+ndeath; i++) for (jk=-1; jk<=nlstate+ndeath; jk++) for(m=agemin; m <= agemax+3; m++) @@ -1185,10 +1188,11 @@ void freqsummary(char fileres[], int ag bool=1; if (cptcovn>0) { for (z1=1; z1<=cptcoveff; z1++) - if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]]) bool=0; + if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]]) + bool=0; } if (bool==1) { - for(m=firstpass; m<=lastpass-1; m++){ + for(m=fprev; m<=lprev; m++){ if(agev[m][i]==0) agev[m][i]=agemax+1; if(agev[m][i]==1) agev[m][i]=agemax+2; freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i]; @@ -1199,8 +1203,8 @@ void freqsummary(char fileres[], int ag if (cptcovn>0) { fprintf(ficresp, "\n#********** Variable "); for (z1=1; z1<=cptcoveff; z1++) fprintf(ficresp, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]); - } fprintf(ficresp, "**********\n#"); + } for(i=1; i<=nlstate;i++) fprintf(ficresp, " Age Prev(%d) N(%d) N",i,i); fprintf(ficresp, "\n"); @@ -1212,7 +1216,7 @@ void freqsummary(char fileres[], int ag printf("Age %d", i); for(jk=1; jk <=nlstate ; jk++){ for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++) - pp[jk] += freq[jk][m][i]; + pp[jk] += freq[jk][m][i]; } for(jk=1; jk <=nlstate ; jk++){ for(m=-1, pos=0; m <=0 ; m++) @@ -1222,10 +1226,12 @@ void freqsummary(char fileres[], int ag else printf(" %d.=%.0f loss[%d]=NaNQ%%",jk,pp[jk],jk); } - for(jk=1; jk <=nlstate ; jk++){ - for(m=1, pp[jk]=0; m <=nlstate+ndeath; m++) + + for(jk=1; jk <=nlstate ; jk++){ + for(m=0, pp[jk]=0; m <=nlstate+ndeath; m++) pp[jk] += freq[jk][m][i]; - } + } + for(jk=1,pos=0; jk <=nlstate ; jk++) pos += pp[jk]; for(jk=1; jk <=nlstate ; jk++){ @@ -1234,8 +1240,11 @@ void freqsummary(char fileres[], int ag else printf(" %d.=%.0f prev[%d]=NaNQ%%",jk,pp[jk],jk); if( i <= (int) agemax){ - if(pos>=1.e-5) + if(pos>=1.e-5){ fprintf(ficresp," %d %.5f %.0f %.0f",i,pp[jk]/pos, pp[jk],pos); + probs[i][jk][j1]= pp[jk]/pos; + /*printf("\ni=%d jk=%d j1=%d %.5f %.0f %.0f %f",i,jk,j1,pp[jk]/pos, pp[jk],pos,probs[i][jk][j1]);*/ + } else fprintf(ficresp," %d NaNq %.0f %.0f",i,pp[jk],pos); } @@ -1268,9 +1277,14 @@ void concatwav(int wav[], int **dh, int */ int i, mi, m; - int j, k=0,jk, ju, jl,jmin=1e+5, jmax=-1; -float sum=0.; + /* int j, k=0,jk, ju, jl,jmin=1e+5, jmax=-1; + double sum=0., jmean=0.;*/ + int j, k=0,jk, ju, jl; + double sum=0.; + jmin=1e+5; + jmax=-1; + jmean=0.; for(i=1; i<=imx; i++){ mi=0; m=firstpass; @@ -1300,14 +1314,22 @@ float sum=0.; dh[mi][i]=1; else{ if (s[mw[mi+1][i]][i] > nlstate) { + if (agedc[i] < 2*AGESUP) { j= rint(agedc[i]*12-agev[mw[mi][i]][i]*12); - if(j=0) j=1; /* Survives at least one month after exam */ + if(j==0) j=1; /* Survives at least one month after exam */ + k=k+1; + if (j >= jmax) jmax=j; + if (j <= jmin) jmin=j; + sum=sum+j; + /* if (j<10) printf("j=%d num=%d ",j,i); */ + } } else{ j= rint( (agev[mw[mi+1][i]][i]*12 - agev[mw[mi][i]][i]*12)); k=k+1; if (j >= jmax) jmax=j; else if (j <= jmin)jmin=j; + /* if (j<10) printf("j=%d jmin=%d num=%d ",j,jmin,i); */ sum=sum+j; } jk= j/stepm; @@ -1322,8 +1344,9 @@ float sum=0.; } } } - printf("Delay (in months) between two waves Min=%d Max=%d Mean=%f\n\n ",jmin, jmax,sum/k); -} + jmean=sum/k; + printf("Delay (in months) between two waves Min=%d Max=%d Mean=%f\n\n ",jmin, jmax,jmean); + } /*********** Tricode ****************************/ void tricode(int *Tvar, int **nbcode, int imx) { @@ -1338,45 +1361,43 @@ void tricode(int *Tvar, int **nbcode, in for (i=1; i<=imx; i++) { ij=(int)(covar[Tvar[j]][i]); Ndum[ij]++; + /*printf("i=%d ij=%d Ndum[ij]=%d imx=%d",i,ij,Ndum[ij],imx);*/ if (ij > cptcode) cptcode=ij; } - /*printf("cptcode=%d cptcovn=%d ",cptcode,cptcovn);*/ for (i=0; i<=cptcode; i++) { if(Ndum[i]!=0) ncodemax[j]++; } ij=1; + for (i=1; i<=ncodemax[j]; i++) { for (k=0; k<=19; k++) { if (Ndum[k] != 0) { nbcode[Tvar[j]][ij]=k; - /* printf("ij=%d ",nbcode[Tvar[2]][1]);*/ ij++; } if (ij > ncodemax[j]) break; } } } - for (i=1; i<=10; i++) { + + for (k=0; k<19; k++) Ndum[k]=0; + + for (i=1; i<=ncovmodel-2; i++) { ij=Tvar[i]; Ndum[ij]++; } + ij=1; - for (i=1; i<=cptcovn; i++) { + for (i=1; i<=10; i++) { if((Ndum[i]!=0) && (i<=ncov)){ - Tvaraff[i]=ij; - ij++; + Tvaraff[ij]=i; + ij++; } } - for (j=1; j<=(cptcovn+2*cptcovprod); j++) { - if ((Tvar[j]>= cptcoveff) && (Tvar[j] <=ncov)) cptcoveff=Tvar[j]; - /*printf("j=%d %d\n",j,Tvar[j]);*/ - } - - /* printf("cptcoveff=%d Tvaraff=%d %d\n",cptcoveff, Tvaraff[1],Tvaraff[2]); - scanf("%d",i);*/ + cptcoveff=ij-1; } /*********** Health Expectancies ****************/ @@ -1438,7 +1459,7 @@ void varevsij(char fileres[], double *** double **dnewm,**doldm; int i, j, nhstepm, hstepm, h; int k, cptcode; - double *xp; + double *xp; double **gp, **gm; double ***gradg, ***trgradg; double ***p3mat; @@ -1474,6 +1495,12 @@ void varevsij(char fileres[], double *** } hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij); prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ij); + + if (popbased==1) { + for(i=1; i<=nlstate;i++) + prlim[i][i]=probs[(int)age][i][ij]; + } + for(j=1; j<= nlstate; j++){ for(h=0; h<=nhstepm; h++){ for(i=1, gp[h][j]=0.;i<=nlstate;i++) @@ -1485,12 +1512,19 @@ void varevsij(char fileres[], double *** xp[i] = x[i] - (i==theta ?delti[theta]:0); hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij); prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ij); + + if (popbased==1) { + for(i=1; i<=nlstate;i++) + prlim[i][i]=probs[(int)age][i][ij]; + } + for(j=1; j<= nlstate; j++){ for(h=0; h<=nhstepm; h++){ for(i=1, gm[h][j]=0.;i<=nlstate;i++) gm[h][j] += prlim[i][i]*p3mat[i][j][h]; } } + for(j=1; j<= nlstate; j++) for(h=0; h<=nhstepm; h++){ gradg[h][theta][j]= (gp[h][j]-gm[h][j])/2./delti[theta]; @@ -1620,7 +1654,110 @@ void varprevlim(char fileres[], double * } +/************ Variance of one-step probabilities ******************/ +void varprob(char fileres[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij) +{ + int i, j; + int k=0, cptcode; + double **dnewm,**doldm; + double *xp; + double *gp, *gm; + double **gradg, **trgradg; + double age,agelim, cov[NCOVMAX]; + int theta; + char fileresprob[FILENAMELENGTH]; + + strcpy(fileresprob,"prob"); + strcat(fileresprob,fileres); + if((ficresprob=fopen(fileresprob,"w"))==NULL) { + printf("Problem with resultfile: %s\n", fileresprob); + } + printf("Computing variance of one-step probabilities: result on file '%s' \n",fileresprob); + + xp=vector(1,npar); + dnewm=matrix(1,(nlstate+ndeath)*(nlstate+ndeath),1,npar); + doldm=matrix(1,(nlstate+ndeath)*(nlstate+ndeath),1,(nlstate+ndeath)*(nlstate+ndeath)); + + cov[1]=1; + for (age=bage; age<=fage; age ++){ + cov[2]=age; + gradg=matrix(1,npar,1,9); + trgradg=matrix(1,9,1,npar); + gp=vector(1,(nlstate+ndeath)*(nlstate+ndeath)); + gm=vector(1,(nlstate+ndeath)*(nlstate+ndeath)); + + for(theta=1; theta <=npar; theta++){ + for(i=1; i<=npar; i++) + xp[i] = x[i] + (i==theta ?delti[theta]:0); + + pmij(pmmij,cov,ncovmodel,xp,nlstate); + + k=0; + for(i=1; i<= (nlstate+ndeath); i++){ + for(j=1; j<=(nlstate+ndeath);j++){ + k=k+1; + gp[k]=pmmij[i][j]; + } + } + + for(i=1; i<=npar; i++) + xp[i] = x[i] - (i==theta ?delti[theta]:0); + + + pmij(pmmij,cov,ncovmodel,xp,nlstate); + k=0; + for(i=1; i<=(nlstate+ndeath); i++){ + for(j=1; j<=(nlstate+ndeath);j++){ + k=k+1; + gm[k]=pmmij[i][j]; + } + } + + for(i=1; i<= (nlstate+ndeath)*(nlstate+ndeath); i++) + gradg[theta][i]=(gp[i]-gm[i])/2./delti[theta]; + } + + for(j=1; j<=(nlstate+ndeath)*(nlstate+ndeath);j++) + for(theta=1; theta <=npar; theta++) + trgradg[j][theta]=gradg[theta][j]; + + matprod2(dnewm,trgradg,1,9,1,npar,1,npar,matcov); + matprod2(doldm,dnewm,1,9,1,npar,1,9,gradg); + + pmij(pmmij,cov,ncovmodel,x,nlstate); + + k=0; + for(i=1; i<=(nlstate+ndeath); i++){ + for(j=1; j<=(nlstate+ndeath);j++){ + k=k+1; + gm[k]=pmmij[i][j]; + } + } + + /*printf("\n%d ",(int)age); + for (i=1; i<=(nlstate+ndeath)*(nlstate+ndeath-1);i++){ + + + printf("%e [%e ;%e] ",gm[i],gm[i]-2*sqrt(doldm[i][i]),gm[i]+2*sqrt(doldm[i][i])); + }*/ + + fprintf(ficresprob,"\n%d ",(int)age); + + for (i=1; i<=(nlstate+ndeath)*(nlstate+ndeath-1);i++){ + if (i== 2) fprintf(ficresprob,"%.3e %.3e ",gm[i],doldm[i][i]); +if (i== 4) fprintf(ficresprob,"%.3e %.3e ",gm[i],doldm[i][i]); + } + + free_vector(gp,1,(nlstate+ndeath)*(nlstate+ndeath)); + free_vector(gm,1,(nlstate+ndeath)*(nlstate+ndeath)); + free_matrix(trgradg,1,(nlstate+ndeath)*(nlstate+ndeath),1,npar); + free_matrix(gradg,1,(nlstate+ndeath)*(nlstate+ndeath),1,npar); +} + free_vector(xp,1,npar); +fclose(ficresprob); + exit(0); +} /***********************************************/ /**************** Main Program *****************/ @@ -1630,7 +1767,7 @@ void varprevlim(char fileres[], double * int main() { - int i,j, k, n=MAXN,iter,m,size,cptcode, aaa, cptcod; + int i,j, k, n=MAXN,iter,m,size,cptcode, cptcod; double agedeb, agefin,hf; double agemin=1.e20, agemax=-1.e20; @@ -1642,8 +1779,8 @@ int main() int *indx; char line[MAXLINE], linepar[MAXLINE]; char title[MAXLINE]; - char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH]; - char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH]; + char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH]; + char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], fileresf[FILENAMELENGTH]; char filerest[FILENAMELENGTH]; char fileregp[FILENAMELENGTH]; char path[80],pathc[80],pathcd[80],pathtot[80],model[20]; @@ -1652,9 +1789,10 @@ int main() int c, h , cpt,l; int ju,jl, mi; int i1,j1, k1,k2,k3,jk,aa,bb, stepsize, ij; - int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab; - + int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab; + int mobilav=0, fprevfore=1, lprevfore=1; int hstepm, nhstepm; + double bage, fage, age, agelim, agebase; double ftolpl=FTOL; double **prlim; @@ -1667,9 +1805,12 @@ int main() double ***eij, ***vareij; double **varpl; /* Variances of prevalence limits by age */ double *epj, vepp; - char version[80]="Imach version 62c, May 1999, INED-EUROREVES "; + double kk1; + + char version[80]="Imach version 64b, May 2001, INED-EUROREVES "; char *alph[]={"a","a","b","c","d","e"}, str[4]; + char z[1]="c", occ; #include #include @@ -1680,7 +1821,7 @@ int main() gettimeofday(&start_time, (struct timezone*)0); */ /* at first time */ - printf("\nIMACH, Version 0.64a"); + printf("\nIMACH, Version 0.64b"); printf("\nEnter the parameter file name: "); #ifdef windows @@ -1728,14 +1869,28 @@ split(pathtot, path,optionfile); fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncov, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model); printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate,ndeath, maxwav, mle, weightopt,model); fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncov,nlstate,ndeath,maxwav, mle, weightopt,model); - - covar=matrix(0,NCOVMAX,1,n); - if (strlen(model)<=1) cptcovn=0; - else { - j=0; - j=nbocc(model,'+'); - cptcovn=j+1; +while((c=getc(ficpar))=='#' && c!= EOF){ + ungetc(c,ficpar); + fgets(line, MAXLINE, ficpar); + puts(line); + fputs(line,ficparo); + } + ungetc(c,ficpar); + + fscanf(ficpar,"fprevalence=%d lprevalence=%d pop_based=%d\n",&fprev,&lprev,&popbased); + while((c=getc(ficpar))=='#' && c!= EOF){ + ungetc(c,ficpar); + fgets(line, MAXLINE, ficpar); + puts(line); + fputs(line,ficparo); } + ungetc(c,ficpar); + + fscanf(ficpar,"fprevalence=%d lprevalence=%d mob_average=%d\n",&fprevfore,&lprevfore,&mobilav); + + covar=matrix(0,NCOVMAX,1,n); + cptcovn=0; + if (strlen(model)>1) cptcovn=nbocc(model,'+')+1; ncovmodel=2+cptcovn; nvar=ncovmodel-1; /* Suppressing age as a basic covariate */ @@ -1766,7 +1921,8 @@ split(pathtot, path,optionfile); fprintf(ficparo,"\n"); } - npar= (nlstate+ndeath-1)*nlstate*ncovmodel; + npar= (nlstate+ndeath-1)*nlstate*ncovmodel; + p=param[1][1]; /* Reads comments: lines beginning with '#' */ @@ -1856,7 +2012,7 @@ split(pathtot, path,optionfile); tab=ivector(1,NCOVMAX); ncodemax=ivector(1,8); - i=1; + i=1; while (fgets(line, MAXLINE, fic) != NULL) { if ((i >= firstobs) && (i <=lastobs)) { @@ -1878,16 +2034,24 @@ split(pathtot, path,optionfile); cutv(stra, strb,line,' '); covar[j][i]=(double)(atoi(strb)); strcpy(line,stra); } num[i]=atol(stra); - - /*printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i]));*/ + + /*if((s[2][i]==2) && (s[3][i]==-1)&&(s[4][i]==9)){ + printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]),weight[i], (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i])); ij=ij+1;}*/ i=i+1; } } - - /*scanf("%d",i);*/ + /* printf("ii=%d", ij); + scanf("%d",i);*/ imx=i-1; /* Number of individuals */ + /* for (i=1; i<=imx; i++){ + if ((s[1][i]==3) && (s[2][i]==2)) s[2][i]=3; + if ((s[2][i]==3) && (s[3][i]==2)) s[3][i]=3; + if ((s[3][i]==3) && (s[4][i]==2)) s[4][i]=3; + } + for (i=1; i<=imx; i++) printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i]));*/ + /* Calculation of the number of parameter from char model*/ Tvar=ivector(1,15); Tprod=ivector(1,15); @@ -1902,90 +2066,65 @@ split(pathtot, path,optionfile); cptcovn=j+1; cptcovprod=j1; + strcpy(modelsav,model); - if (j==0) { - if (j1==0){ - cutv(stra,strb,modelsav,'V'); - Tvar[1]=atoi(strb); - } - else if (j1==1) { - cutv(stra,strb,modelsav,'*'); - Tage[1]=1; cptcovage++; - if (strcmp(stra,"age")==0) { + if ((strcmp(model,"age")==0) || (strcmp(model,"age*age")==0)){ + printf("Error. Non available option model=%s ",model); + goto end; + } + + for(i=(j+1); i>=1;i--){ + cutv(stra,strb,modelsav,'+'); + if (nbocc(modelsav,'+')==0) strcpy(strb,modelsav); + /* printf("i=%d a=%s b=%s sav=%s\n",i, stra,strb,modelsav);*/ + /*scanf("%d",i);*/ + if (strchr(strb,'*')) { + cutv(strd,strc,strb,'*'); + if (strcmp(strc,"age")==0) { cptcovprod--; - cutv(strd,strc,strb,'V'); - Tvar[1]=atoi(strc); + cutv(strb,stre,strd,'V'); + Tvar[i]=atoi(stre); + cptcovage++; + Tage[cptcovage]=i; + /*printf("stre=%s ", stre);*/ } - else if (strcmp(strb,"age")==0) { + else if (strcmp(strd,"age")==0) { cptcovprod--; - cutv(strd,strc,stra,'V'); - Tvar[1]=atoi(strc); + cutv(strb,stre,strc,'V'); + Tvar[i]=atoi(stre); + cptcovage++; + Tage[cptcovage]=i; } else { - cutv(strd,strc,strb,'V'); - cutv(stre,strd,stra,'V'); - Tvar[1]=ncov+1; + cutv(strb,stre,strc,'V'); + Tvar[i]=ncov+k1; + cutv(strb,strc,strd,'V'); + Tprod[k1]=i; + Tvard[k1][1]=atoi(strc); + Tvard[k1][2]=atoi(stre); + Tvar[cptcovn+k2]=Tvard[k1][1]; + Tvar[cptcovn+k2+1]=Tvard[k1][2]; for (k=1; k<=lastobs;k++) - covar[ncov+1][k]=covar[atoi(strc)][k]*covar[atoi(strd)][k]; - } - /*printf("%s %s %s\n", stra,strb,modelsav); -printf("%d ",Tvar[1]); -scanf("%d",i);*/ - } - } - else { - for(i=j; i>=1;i--){ - cutv(stra,strb,modelsav,'+'); - /*printf("%s %s %s\n", stra,strb,modelsav); - scanf("%d",i);*/ - if (strchr(strb,'*')) { - cutv(strd,strc,strb,'*'); - if (strcmp(strc,"age")==0) { - cptcovprod--; - cutv(strb,stre,strd,'V'); - Tvar[i+1]=atoi(stre); - cptcovage++; - Tage[cptcovage]=i+1; - printf("stre=%s ", stre); - } - else if (strcmp(strd,"age")==0) { - cptcovprod--; - cutv(strb,stre,strc,'V'); - Tvar[i+1]=atoi(stre); - cptcovage++; - Tage[cptcovage]=i+1; - } - else { - cutv(strb,stre,strc,'V'); - Tvar[i+1]=ncov+k1; - cutv(strb,strc,strd,'V'); - Tprod[k1]=i+1; - Tvard[k1][1]=atoi(strc); - Tvard[k1][2]=atoi(stre); - Tvar[cptcovn+k2]=Tvard[k1][1]; - Tvar[cptcovn+k2+1]=Tvard[k1][2]; - for (k=1; k<=lastobs;k++) - covar[ncov+k1][k]=covar[atoi(stre)][k]*covar[atoi(strc)][k]; - k1++; - k2=k2+2; - } + covar[ncov+k1][k]=covar[atoi(stre)][k]*covar[atoi(strc)][k]; + k1++; + k2=k2+2; } - else { - cutv(strd,strc,strb,'V'); - /* printf("%s %s %s", strd,strc,strb);*/ - Tvar[i+1]=atoi(strc); - } - strcpy(modelsav,stra); } - cutv(strd,strc,stra,'V'); - Tvar[1]=atoi(strc); + else { + /*printf("d=%s c=%s b=%s\n", strd,strc,strb);*/ + /* scanf("%d",i);*/ + cutv(strd,strc,strb,'V'); + Tvar[i]=atoi(strc); + } + strcpy(modelsav,stra); + /*printf("a=%s b=%s sav=%s\n", stra,strb,modelsav); + scanf("%d",i);*/ } - } - /* for (i=1; i<=5; i++) - printf("i=%d %d ",i,Tvar[i]);*/ - /* printf("tvar=%d %d cptcovage=%d %d",Tvar[1],Tvar[2],cptcovage,Tage[1]);*/ - /*printf("cptcovprod=%d ", cptcovprod);*/ - /* scanf("%d ",i);*/ +} + + /*printf("tvar1=%d tvar2=%d tvar3=%d cptcovage=%d Tage=%d",Tvar[1],Tvar[2],Tvar[3],cptcovage,Tage[1]); + printf("cptcovprod=%d ", cptcovprod); + scanf("%d ",i);*/ fclose(fic); /* if(mle==1){*/ @@ -1994,6 +2133,13 @@ scanf("%d",i);*/ } /*-calculation of age at interview from date of interview and age at death -*/ agev=matrix(1,maxwav,1,imx); + + for (i=1; i<=imx; i++) + for(m=2; (m<= maxwav); m++) + if ((mint[m][i]== 99) && (s[m][i] <= nlstate)){ + anint[m][i]=9999; + s[m][i]=-1; + } for (i=1; i<=imx; i++) { agedc[i]=(moisdc[i]/12.+andc[i])-(moisnais[i]/12.+annais[i]); @@ -2003,9 +2149,11 @@ scanf("%d",i);*/ if(agedc[i]>0) if(moisdc[i]!=99 && andc[i]!=9999) agev[m][i]=agedc[i]; - else{ + else { + if (andc[i]!=9999){ printf("Warning negative age at death: %d line:%d\n",num[i],i); agev[m][i]=-1; + } } } else if(s[m][i] !=9){ /* Should no more exist */ @@ -2063,7 +2211,7 @@ printf("Total number of individuals= %d, Tcode=ivector(1,100); - nbcode=imatrix(1,nvar,1,8); + nbcode=imatrix(0,NCOVMAX,0,NCOVMAX); ncodemax[1]=1; if (cptcovn > 0) tricode(Tvar,nbcode,imx); @@ -2100,7 +2248,7 @@ printf("Total number of individuals= %d, newms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ savms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */ oldm=oldms; newm=newms; savm=savms; /* Keeps fixed addresses to free */ - + /* For Powell, parameters are in a vector p[] starting at p[1] so we point p on param[1][1] so that p[1] maps on param[1][1][1] */ p=param[1][1]; /* *(*(*(param +1)+1)+0) */ @@ -2296,7 +2444,7 @@ fprintf(ficgp,"\nset out \"v%s%d%d.gif\" fprintf(ficgp,")) t\"prev(%d,%d)\" w l\n",cpt+1,cpt+1); fprintf(ficgp,"set out \"p%s%d%d.gif\" \nreplot\n\n",strtok(optionfile, "."),cpt,k1); } - } + } /* proba elementaires */ for(i=1,jk=1; i <=nlstate; i++){ @@ -2392,11 +2540,18 @@ chdir(path); fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage); /*--------- index.htm --------*/ - if((fichtm=fopen("index.htm","w"))==NULL) { - printf("Problem with index.htm \n");goto end; + strcpy(optionfilehtm,optionfile); + strcat(optionfilehtm,".htm"); + if((fichtm=fopen(optionfilehtm,"w"))==NULL) { + printf("Problem with %s \n",optionfilehtm);goto end; } - fprintf(fichtm,"
    Imach, Version 0.64a
  • Outputs files

    \n + fprintf(fichtm,"
      Imach, Version 0.64b
      +Titre=%s
      Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s
      +Total number of observations=%d
      +Interval (in months) between two waves: Min=%d Max=%d Mean=%.2lf
      +
      +
    • Outputs files

      \n - Observed prevalence in each state: p%s
      \n - Estimated parameters and the covariance matrix: %s
      - Stationary prevalence in each state: pl%s
      @@ -2405,9 +2560,11 @@ chdir(path); - Life expectancies by age and initial health status: e%s
      - Variances of life expectancies by age and initial health status: v%s
      - Health expectancies with their variances: t%s
      - - Standard deviation of stationary prevalences: vpl%s

      ",fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres); + - Standard deviation of stationary prevalences: vpl%s
      + - Prevalences forecasting: f%s
      +
      ",title,datafile,firstpass,lastpass,stepm, weightopt,model,imx,jmin,jmax,jmean,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres); - fprintf(fichtm,"
    • Graphs
      • \n

      "); + fprintf(fichtm,"

    • Graphs

      • "); m=cptcoveff; if (cptcovn < 1) {m=1;ncodemax[1]=1;} @@ -2417,10 +2574,10 @@ chdir(path); for(i1=1; i1<=ncodemax[k1];i1++){ j1++; if (cptcovn > 0) { - fprintf(fichtm,"

      ************ Results for covariates"); + fprintf(fichtm,"
      ************ Results for covariates"); for (cpt=1; cpt<=cptcoveff;cpt++) fprintf(fichtm," V%d=%d ",Tvaraff[cpt],nbcode[Tvaraff[cpt]][codtab[j1][cpt]]); - fprintf(fichtm," ************\n
      "); + fprintf(fichtm," ************\n
      "); } fprintf(fichtm,"
      - Probabilities: pe%s%d.gif
      ",strtok(optionfile, "."),j1,strtok(optionfile, "."),j1); @@ -2490,6 +2647,7 @@ fclose(fichtm); } } fclose(ficrespl); + /*------------- h Pij x at various ages ------------*/ strcpy(filerespij,"pij"); strcat(filerespij,fileres); @@ -2499,7 +2657,7 @@ fclose(fichtm); printf("Computing pij: result on file '%s' \n", filerespij); stepsize=(int) (stepm+YEARM-1)/YEARM; - if (stepm<=24) stepsize=2; + /*if (stepm<=24) stepsize=2;*/ agelim=AGESUP; hstepm=stepsize*YEARM; /* Every year of age */ @@ -2538,8 +2696,113 @@ fclose(fichtm); } } + /* varprob(fileres, matcov, p, delti, nlstate, (int) bage, (int) fage,k);*/ + fclose(ficrespij); + /*---------- Forecasting ------------------*/ + + strcpy(fileresf,"f"); + strcat(fileresf,fileres); + if((ficresf=fopen(fileresf,"w"))==NULL) { + printf("Problem with forecast resultfile: %s\n", fileresf);goto end; + } + printf("Computing forecasting: result on file '%s' \n", fileresf); + + /* Mobile average */ + + /* for (agedeb=bage; agedeb<=fage; agedeb++) + for (i=1; i<=nlstate;i++) + for (cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++) + printf("%f %d i=%d j1=%d\n", probs[(int)agedeb][i][cptcod],(int) agedeb,i,cptcod);*/ + + if (cptcoveff==0) ncodemax[cptcoveff]=1; + + if (mobilav==1) { + mobaverage= ma3x(1, AGESUP,1,NCOVMAX, 1,NCOVMAX); + for (agedeb=bage+3; agedeb<=fage-2; agedeb++) + for (i=1; i<=nlstate;i++) + for (cptcod=1;cptcod<=ncodemax[cptcov];cptcod++) + mobaverage[(int)agedeb][i][cptcod]=0.; + + for (agedeb=bage+4; agedeb<=fage; agedeb++){ + for (i=1; i<=nlstate;i++){ + for (cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){ + for (cpt=0;cpt<=4;cpt++){ + mobaverage[(int)agedeb-2][i][cptcod]=mobaverage[(int)agedeb-2][i][cptcod]+probs[(int)agedeb-cpt][i][cptcod]; + } + mobaverage[(int)agedeb-2][i][cptcod]=mobaverage[(int)agedeb-2][i][cptcod]/5; + } + } + } + } + + stepsize=(int) (stepm+YEARM-1)/YEARM; + if (stepm<=24) stepsize=2; + + agelim=AGESUP; + hstepm=stepsize*YEARM; /* Every year of age */ + hstepm=hstepm/stepm; /* Typically 2 years, = 2/6 months = 4 */ + hstepm=12; + k=0; + for(cptcov=1;cptcov<=i1;cptcov++){ + for(cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){ + k=k+1; + fprintf(ficresf,"\n#****** "); + for(j=1;j<=cptcoveff;j++) { + fprintf(ficresf,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); + } + + fprintf(ficresf,"******\n"); + + fprintf(ficresf,"# StartingAge FinalAge Horizon(in years)"); + for(j=1; j<=nlstate+ndeath;j++) fprintf(ficresf," P.%d",j); + + for (agedeb=fage; agedeb>=bage; agedeb--){ + fprintf(ficresf,"\n%d %.f %.f 0 ",k,agedeb, agedeb); + if (mobilav==1) { + for(j=1; j<=nlstate;j++) + fprintf(ficresf,"%.5f ",mobaverage[(int)agedeb][j][cptcod]); + } + else { + for(j=1; j<=nlstate;j++) + fprintf(ficresf,"%.5f ",probs[(int)agedeb][j][cptcod]); + } + + for(j=1; j<=ndeath;j++) fprintf(ficresf,"0."); + } + for (cpt=1; cpt<=NCOVMAX;cpt++) + for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */ + + nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */ + nhstepm = nhstepm/hstepm; /* Typically 40/4=10 */ + /*printf("stepm=%d hstepm=%d nhstepm=%d \n",stepm,hstepm,nhstepm);*/ + + p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); + oldm=oldms;savm=savms; + hpxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); + + for (h=0; h<=nhstepm; h++){ + + if (h*hstepm/YEARM*stepm==cpt) + fprintf(ficresf,"\n%d %.f %.f %.f",k,agedeb, agedeb+ h*hstepm/YEARM*stepm, h*hstepm/YEARM*stepm); + + for(j=1; j<=nlstate+ndeath;j++) { + kk1=0.; + for(i=1; i<=nlstate;i++) { + if (mobilav==1) + kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb][i][cptcod]; + else kk1=kk1+p3mat[i][j][h]*probs[(int)agedeb][i][cptcod]; + } + if (h*hstepm/YEARM*stepm==cpt) fprintf(ficresf," %.5f ", kk1); + } + } + free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); + } + } + } + if (mobilav==1) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); + fclose(ficresf); /*---------- Health expectancies and variances ------------*/ strcpy(filerest,"t"); @@ -2599,6 +2862,11 @@ fclose(fichtm); epj=vector(1,nlstate+1); for(age=bage; age <=fage ;age++){ prevalim(prlim, nlstate, p, age, oldm, savm,ftolpl,k); + if (popbased==1) { + for(i=1; i<=nlstate;i++) + prlim[i][i]=probs[(int)age][i][k]; + } + fprintf(ficrest," %.0f",age); for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){ for(i=1, epj[j]=0.;i <=nlstate;i++) { @@ -2618,6 +2886,9 @@ fclose(fichtm); } } + + + fclose(ficreseij); fclose(ficresvij); fclose(ficrest); @@ -2663,7 +2934,7 @@ strcpy(fileresvpl,"vpl"); free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); free_matrix(savms, 1,nlstate+ndeath,1,nlstate+ndeath); - + free_matrix(matcov,1,npar,1,npar); free_vector(delti,1,npar); @@ -2676,11 +2947,13 @@ strcpy(fileresvpl,"vpl"); /*printf("Total time was %d uSec.\n", total_usecs);*/ /*------ End -----------*/ + end: #ifdef windows chdir(pathcd); #endif - system("wgnuplot graph.plt"); + + system("..\\gp37mgw\\wgnuplot graph.plt"); #ifdef windows while (z[0] != 'q') { @@ -2690,7 +2963,7 @@ strcpy(fileresvpl,"vpl"); if (z[0] == 'c') system("./imach"); else if (z[0] == 'e') { chdir(path); - system("index.htm"); + system(optionfilehtm); } else if (z[0] == 'q') exit(0); }