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! 7: <title>Computing Health Expectancies using IMaCh</title>
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! 14: <h1 align="center"><font color="#00006A">Computing Health
! 15: Expectancies using IMaCh</font></h1>
! 16:
! 17: <h1 align="center"><font color="#00006A" size="5">(a Maximum
! 18: Likelihood Computer Program using Interpolation of Markov Chains)</font></h1>
! 19:
! 20: <p align="center"> </p>
! 21:
! 22: <p align="center"><a href="http://www.ined.fr/"><img
! 23: src="logo-ined.gif" border="0" width="151" height="76"></a><img
! 24: src="euroreves2.gif" width="151" height="75"></p>
! 25:
! 26: <h3 align="center"><a href="http://www.ined.fr/"><font
! 27: color="#00006A">INED</font></a><font color="#00006A"> and </font><a
! 28: href="http://euroreves.ined.fr"><font color="#00006A">EUROREVES</font></a></h3>
! 29:
! 30: <p align="center"><font color="#00006A" size="4"><strong>March
! 31: 2000</strong></font></p>
! 32:
! 33: <hr size="3" color="#EC5E5E">
! 34:
! 35: <p align="center"><font color="#00006A"><strong>Authors of the
! 36: program: </strong></font><a href="http://sauvy.ined.fr/brouard"><font
! 37: color="#00006A"><strong>Nicolas Brouard</strong></font></a><font
! 38: color="#00006A"><strong>, senior researcher at the </strong></font><a
! 39: href="http://www.ined.fr"><font color="#00006A"><strong>Institut
! 40: National d'Etudes Démographiques</strong></font></a><font
! 41: color="#00006A"><strong> (INED, Paris) in the "Mortality,
! 42: Health and Epidemiology" Research Unit </strong></font></p>
! 43:
! 44: <p align="center"><font color="#00006A"><strong>and Agnès
! 45: Lièvre<br clear="left">
! 46: </strong></font></p>
! 47:
! 48: <h4><font color="#00006A">Contribution to the mathematics: C. R.
! 49: Heathcote </font><font color="#00006A" size="2">(Australian
! 50: National University, Canberra).</font></h4>
! 51:
! 52: <h4><font color="#00006A">Contact: Agnès Lièvre (</font><a
! 53: href="mailto:lievre@ined.fr"><font color="#00006A"><i>lievre@ined.fr</i></font></a><font
! 54: color="#00006A">) </font></h4>
! 55:
! 56: <hr>
! 57:
! 58: <ul>
! 59: <li><a href="#intro">Introduction</a> </li>
! 60: <li>The detailed statistical model (<a href="docmath.pdf">PDF
! 61: version</a>),(<a href="docmath.ps">ps version</a>) </li>
! 62: <li><a href="#data">On what kind of data can it be used?</a></li>
! 63: <li><a href="#datafile">The data file</a> </li>
! 64: <li><a href="#biaspar">The parameter file</a> </li>
! 65: <li><a href="#running">Running Imach</a> </li>
! 66: <li><a href="#output">Output files and graphs</a> </li>
! 67: <li><a href="#example">Exemple</a> </li>
! 68: </ul>
! 69:
! 70: <hr>
! 71:
! 72: <h2><a name="intro"><font color="#00006A">Introduction</font></a></h2>
! 73:
! 74: <p>This program computes <b>Healthy Life Expectancies</b> from <b>cross-longitudinal
! 75: data</b>. Within the family of Health Expectancies (HE),
! 76: Disability-free life expectancy (DFLE) is probably the most
! 77: important index to monitor. In low mortality countries, there is
! 78: a fear that when mortality declines, the increase in DFLE is not
! 79: proportionate to the increase in total Life expectancy. This case
! 80: is called the <em>Expansion of morbidity</em>. Most of the data
! 81: collected today, in particular by the international <a
! 82: href="http://euroreves/reves">REVES</a> network on Health
! 83: expectancy, and most HE indices based on these data, are <em>cross-sectional</em>.
! 84: It means that the information collected comes from a single
! 85: cross-sectional survey: people from various ages (but mostly old
! 86: people) are surveyed on their health status at a single date.
! 87: Proportion of people disabled at each age, can then be measured
! 88: at that date. This age-specific prevalence curve is then used to
! 89: distinguish, within the stationary population (which, by
! 90: definition, is the life table estimated from the vital statistics
! 91: on mortality at the same date), the disable population from the
! 92: disability-free population. Life expectancy (LE) (or total
! 93: population divided by the yearly number of births or deaths of
! 94: this stationary population) is then decomposed into DFLE and DLE.
! 95: This method of computing HE is usually called the Sullivan method
! 96: (from the name of the author who first described it).</p>
! 97:
! 98: <p>Age-specific proportions of people disable are very difficult
! 99: to forecast because each proportion corresponds to historical
! 100: conditions of the cohort and it is the result of the historical
! 101: flows from entering disability and recovering in the past until
! 102: today. The age-specific intensities (or incidence rates) of
! 103: entering disability or recovering a good health, are reflecting
! 104: actual conditions and therefore can be used at each age to
! 105: forecast the future of this cohort. For example if a country is
! 106: improving its technology of prosthesis, the incidence of
! 107: recovering the ability to walk will be higher at each (old) age,
! 108: but the prevalence of disability will only slightly reflect an
! 109: improve because the prevalence is mostly affected by the history
! 110: of the cohort and not by recent period effects. To measure the
! 111: period improvement we have to simulate the future of a cohort of
! 112: new-borns entering or leaving at each age the disability state or
! 113: dying according to the incidence rates measured today on
! 114: different cohorts. The proportion of people disabled at each age
! 115: in this simulated cohort will be much lower (using the exemple of
! 116: an improvement) that the proportions observed at each age in a
! 117: cross-sectional survey. This new prevalence curve introduced in a
! 118: life table will give a much more actual and realistic HE level
! 119: than the Sullivan method which mostly measured the History of
! 120: health conditions in this country.</p>
! 121:
! 122: <p>Therefore, the main question is how to measure incidence rates
! 123: from cross-longitudinal surveys? This is the goal of the IMaCH
! 124: program. From your data and using IMaCH you can estimate period
! 125: HE and not only Sullivan's HE. Also the standard errors of the HE
! 126: are computed.</p>
! 127:
! 128: <p>A cross-longitudinal survey consists in a first survey
! 129: ("cross") where individuals from different ages are
! 130: interviewed on their health status or degree of disability. At
! 131: least a second wave of interviews ("longitudinal")
! 132: should measure each new individual health status. Health
! 133: expectancies are computed from the transitions observed between
! 134: waves and are computed for each degree of severity of disability
! 135: (number of life states). More degrees you consider, more time is
! 136: necessary to reach the Maximum Likelihood of the parameters
! 137: involved in the model. Considering only two states of disability
! 138: (disable and healthy) is generally enough but the computer
! 139: program works also with more health statuses.<br>
! 140: <br>
! 141: The simplest model is the multinomial logistic model where <i>pij</i>
! 142: is the probability to be observed in state <i>j</i> at the second
! 143: wave conditional to be observed in state <em>i</em> at the first
! 144: wave. Therefore a simple model is: log<em>(pij/pii)= aij +
! 145: bij*age+ cij*sex,</em> where '<i>age</i>' is age and '<i>sex</i>'
! 146: is a covariate. The advantage that this computer program claims,
! 147: comes from that if the delay between waves is not identical for
! 148: each individual, or if some individual missed an interview, the
! 149: information is not rounded or lost, but taken into account using
! 150: an interpolation or extrapolation. <i>hPijx</i> is the
! 151: probability to be observed in state <i>i</i> at age <i>x+h</i>
! 152: conditional to the observed state <i>i</i> at age <i>x</i>. The
! 153: delay '<i>h</i>' can be split into an exact number (<i>nh*stepm</i>)
! 154: of unobserved intermediate states. This elementary transition (by
! 155: month or quarter trimester, semester or year) is modeled as a
! 156: multinomial logistic. The <i>hPx</i> matrix is simply the matrix
! 157: product of <i>nh*stepm</i> elementary matrices and the
! 158: contribution of each individual to the likelihood is simply <i>hPijx</i>.
! 159: <br>
! 160: </p>
! 161:
! 162: <p>The program presented in this manual is a quite general
! 163: program named <strong>IMaCh</strong> (for <strong>I</strong>nterpolated
! 164: <strong>MA</strong>rkov <strong>CH</strong>ain), designed to
! 165: analyse transition data from longitudinal surveys. The first step
! 166: is the parameters estimation of a transition probabilities model
! 167: between an initial status and a final status. From there, the
! 168: computer program produces some indicators such as observed and
! 169: stationary prevalence, life expectancies and their variances and
! 170: graphs. Our transition model consists in absorbing and
! 171: non-absorbing states with the possibility of return across the
! 172: non-absorbing states. The main advantage of this package,
! 173: compared to other programs for the analysis of transition data
! 174: (For example: Proc Catmod of SAS<sup>®</sup>) is that the whole
! 175: individual information is used even if an interview is missing, a
! 176: status or a date is unknown or when the delay between waves is
! 177: not identical for each individual. The program can be executed
! 178: according to parameters: selection of a sub-sample, number of
! 179: absorbing and non-absorbing states, number of waves taken in
! 180: account (the user inputs the first and the last interview), a
! 181: tolerance level for the maximization function, the periodicity of
! 182: the transitions (we can compute annual, quaterly or monthly
! 183: transitions), covariates in the model. It works on Windows or on
! 184: Unix.<br>
! 185: </p>
! 186:
! 187: <hr>
! 188:
! 189: <h2><a name="data"><font color="#00006A">On what kind of data can
! 190: it be used?</font></a></h2>
! 191:
! 192: <p>The minimum data required for a transition model is the
! 193: recording of a set of individuals interviewed at a first date and
! 194: interviewed again at least one another time. From the
! 195: observations of an individual, we obtain a follow-up over time of
! 196: the occurrence of a specific event. In this documentation, the
! 197: event is related to health status at older ages, but the program
! 198: can be applied on a lot of longitudinal studies in different
! 199: contexts. To build the data file explained into the next section,
! 200: you must have the month and year of each interview and the
! 201: corresponding health status. But in order to get age, date of
! 202: birth (month and year) is required (missing values is allowed for
! 203: month). Date of death (month and year) is an important
! 204: information also required if the individual is dead. Shorter
! 205: steps (i.e. a month) will more closely take into account the
! 206: survival time after the last interview.</p>
! 207:
! 208: <hr>
! 209:
! 210: <h2><a name="datafile"><font color="#00006A">The data file</font></a></h2>
! 211:
! 212: <p>In this example, 8,000 people have been interviewed in a
! 213: cross-longitudinal survey of 4 waves (1984, 1986, 1988, 1990).
! 214: Some people missed 1, 2 or 3 interviews. Health statuses are
! 215: healthy (1) and disable (2). The survey is not a real one. It is
! 216: a simulation of the American Longitudinal Survey on Aging. The
! 217: disability state is defined if the individual missed one of four
! 218: ADL (Activity of daily living, like bathing, eating, walking).
! 219: Therefore, even is the individuals interviewed in the sample are
! 220: virtual, the information brought with this sample is close to the
! 221: situation of the United States. Sex is not recorded is this
! 222: sample.</p>
! 223:
! 224: <p>Each line of the data set (named <a href="data1.txt">data1.txt</a>
! 225: in this first example) is an individual record which fields are: </p>
! 226:
! 227: <ul>
! 228: <li><b>Index number</b>: positive number (field 1) </li>
! 229: <li><b>First covariate</b> positive number (field 2) </li>
! 230: <li><b>Second covariate</b> positive number (field 3) </li>
! 231: <li><a name="Weight"><b>Weight</b></a>: positive number
! 232: (field 4) . In most surveys individuals are weighted
! 233: according to the stratification of the sample.</li>
! 234: <li><b>Date of birth</b>: coded as mm/yyyy. Missing dates are
! 235: coded as 99/9999 (field 5) </li>
! 236: <li><b>Date of death</b>: coded as mm/yyyy. Missing dates are
! 237: coded as 99/9999 (field 6) </li>
! 238: <li><b>Date of first interview</b>: coded as mm/yyyy. Missing
! 239: dates are coded as 99/9999 (field 7) </li>
! 240: <li><b>Status at first interview</b>: positive number.
! 241: Missing values ar coded -1. (field 8) </li>
! 242: <li><b>Date of second interview</b>: coded as mm/yyyy.
! 243: Missing dates are coded as 99/9999 (field 9) </li>
! 244: <li><strong>Status at second interview</strong> positive
! 245: number. Missing values ar coded -1. (field 10) </li>
! 246: <li><b>Date of third interview</b>: coded as mm/yyyy. Missing
! 247: dates are coded as 99/9999 (field 11) </li>
! 248: <li><strong>Status at third interview</strong> positive
! 249: number. Missing values ar coded -1. (field 12) </li>
! 250: <li><b>Date of fourth interview</b>: coded as mm/yyyy.
! 251: Missing dates are coded as 99/9999 (field 13) </li>
! 252: <li><strong>Status at fourth interview</strong> positive
! 253: number. Missing values are coded -1. (field 14) </li>
! 254: <li>etc</li>
! 255: </ul>
! 256:
! 257: <p> </p>
! 258:
! 259: <p>If your longitudinal survey do not include information about
! 260: weights or covariates, you must fill the column with a number
! 261: (e.g. 1) because a missing field is not allowed.</p>
! 262:
! 263: <hr>
! 264:
! 265: <h2><font color="#00006A">Your first example parameter file</font><a
! 266: href="http://euroreves.ined.fr/imach"></a><a name="uio"></a></h2>
! 267:
! 268: <h2><a name="biaspar"></a>#Imach version 0.63, February 2000,
! 269: INED-EUROREVES </h2>
! 270:
! 271: <p>This is a comment. Comments start with a '#'.</p>
! 272:
! 273: <h4><font color="#FF0000">First uncommented line</font></h4>
! 274:
! 275: <pre>title=1st_example datafile=data1.txt lastobs=8600 firstpass=1 lastpass=4</pre>
! 276:
! 277: <ul>
! 278: <li><b>title=</b> 1st_example is title of the run. </li>
! 279: <li><b>datafile=</b>data1.txt is the name of the data set.
! 280: Our example is a six years follow-up survey. It consists
! 281: in a baseline followed by 3 reinterviews. </li>
! 282: <li><b>lastobs=</b> 8600 the program is able to run on a
! 283: subsample where the last observation number is lastobs.
! 284: It can be set a bigger number than the real number of
! 285: observations (e.g. 100000). In this example, maximisation
! 286: will be done on the 8600 first records. </li>
! 287: <li><b>firstpass=1</b> , <b>lastpass=4 </b>In case of more
! 288: than two interviews in the survey, the program can be run
! 289: on selected transitions periods. firstpass=1 means the
! 290: first interview included in the calculation is the
! 291: baseline survey. lastpass=4 means that the information
! 292: brought by the 4th interview is taken into account.</li>
! 293: </ul>
! 294:
! 295: <p> </p>
! 296:
! 297: <h4><a name="biaspar-2"><font color="#FF0000">Second uncommented
! 298: line</font></a></h4>
! 299:
! 300: <pre>ftol=1.e-08 stepm=1 ncov=2 nlstate=2 ndeath=1 maxwav=4 mle=1 weight=0</pre>
! 301:
! 302: <ul>
! 303: <li><b>ftol=1e-8</b> Convergence tolerance on the function
! 304: value in the maximisation of the likelihood. Choosing a
! 305: correct value for ftol is difficult. 1e-8 is a correct
! 306: value for a 32 bits computer.</li>
! 307: <li><b>stepm=1</b> Time unit in months for interpolation.
! 308: Examples:<ul>
! 309: <li>If stepm=1, the unit is a month </li>
! 310: <li>If stepm=4, the unit is a trimester</li>
! 311: <li>If stepm=12, the unit is a year </li>
! 312: <li>If stepm=24, the unit is two years</li>
! 313: <li>... </li>
! 314: </ul>
! 315: </li>
! 316: <li><b>ncov=2</b> Number of covariates to be add to the
! 317: model. The intercept and the age parameter are counting
! 318: for 2 covariates. For example, if you want to add gender
! 319: in the covariate vector you must write ncov=3 else
! 320: ncov=2. </li>
! 321: <li><b>nlstate=2</b> Number of non-absorbing (live) states.
! 322: Here we have two alive states: disability-free is coded 1
! 323: and disability is coded 2. </li>
! 324: <li><b>ndeath=1</b> Number of absorbing states. The absorbing
! 325: state death is coded 3. </li>
! 326: <li><b>maxwav=4</b> Maximum number of waves. The program can
! 327: not include more than 4 interviews. </li>
! 328: <li><a name="mle"><b>mle</b></a><b>=1</b> Option for the
! 329: Maximisation Likelihood Estimation. <ul>
! 330: <li>If mle=1 the program does the maximisation and
! 331: the calculation of heath expectancies </li>
! 332: <li>If mle=0 the program only does the calculation of
! 333: the health expectancies. </li>
! 334: </ul>
! 335: </li>
! 336: <li><b>weight=0</b> Possibility to add weights. <ul>
! 337: <li>If weight=0 no weights are included </li>
! 338: <li>If weight=1 the maximisation integrates the
! 339: weights which are in field <a href="#Weight">4</a></li>
! 340: </ul>
! 341: </li>
! 342: </ul>
! 343:
! 344: <h4><font color="#FF0000">Guess values for optimization</font><font
! 345: color="#00006A"> </font></h4>
! 346:
! 347: <p>You must write the initial guess values of the parameters for
! 348: optimization. The number of parameters, <em>N</em> depends on the
! 349: number of absorbing states and non-absorbing states and on the
! 350: number of covariates. <br>
! 351: <em>N</em> is given by the formula <em>N</em>=(<em>nlstate</em> +
! 352: <em>ndeath</em>-1)*<em>nlstate</em>*<em>ncov</em> . <br>
! 353: <br>
! 354: Thus in the simple case with 2 covariates (the model is log
! 355: (pij/pii) = aij + bij * age where intercept and age are the two
! 356: covariates), and 2 health degrees (1 for disability-free and 2
! 357: for disability) and 1 absorbing state (3), you must enter 8
! 358: initials values, a12, b12, a13, b13, a21, b21, a23, b23. You can
! 359: start with zeros as in this example, but if you have a more
! 360: precise set (for example from an earlier run) you can enter it
! 361: and it will speed up them<br>
! 362: Each of the four lines starts with indices "ij": <br>
! 363: <br>
! 364: <b>ij aij bij</b> </p>
! 365:
! 366: <blockquote>
! 367: <pre># Guess values of aij and bij in log (pij/pii) = aij + bij * age
! 368: 12 -14.155633 0.110794
! 369: 13 -7.925360 0.032091
! 370: 21 -1.890135 -0.029473
! 371: 23 -6.234642 0.022315 </pre>
! 372: </blockquote>
! 373:
! 374: <p>or, to simplify: </p>
! 375:
! 376: <blockquote>
! 377: <pre>12 0.0 0.0
! 378: 13 0.0 0.0
! 379: 21 0.0 0.0
! 380: 23 0.0 0.0</pre>
! 381: </blockquote>
! 382:
! 383: <h4><font color="#FF0000">Guess values for computing variances</font></h4>
! 384:
! 385: <p>This is an output if <a href="#mle">mle</a>=1. But it can be
! 386: used as an input to get the vairous output data files (Health
! 387: expectancies, stationary prevalence etc.) and figures without
! 388: rerunning the rather long maximisation phase (mle=0). </p>
! 389:
! 390: <p>The scales are small values for the evaluation of numerical
! 391: derivatives. These derivatives are used to compute the hessian
! 392: matrix of the parameters, that is the inverse of the covariance
! 393: matrix, and the variances of health expectancies. Each line
! 394: consists in indices "ij" followed by the initial scales
! 395: (zero to simplify) associated with aij and bij. </p>
! 396:
! 397: <ul>
! 398: <li>If mle=1 you can enter zeros:</li>
! 399: </ul>
! 400:
! 401: <blockquote>
! 402: <pre># Scales (for hessian or gradient estimation)
! 403: 12 0. 0.
! 404: 13 0. 0.
! 405: 21 0. 0.
! 406: 23 0. 0. </pre>
! 407: </blockquote>
! 408:
! 409: <ul>
! 410: <li>If mle=0 you must enter a covariance matrix (usually
! 411: obtained from an earlier run).</li>
! 412: </ul>
! 413:
! 414: <h4><font color="#FF0000">Covariance matrix of parameters</font></h4>
! 415:
! 416: <p>This is an output if <a href="#mle">mle</a>=1. But it can be
! 417: used as an input to get the vairous output data files (Health
! 418: expectancies, stationary prevalence etc.) and figures without
! 419: rerunning the rather long maximisation phase (mle=0). </p>
! 420:
! 421: <p>Each line starts with indices "ijk" followed by the
! 422: covariances between aij and bij: </p>
! 423:
! 424: <pre>
! 425: 121 Var(a12)
! 426: 122 Cov(b12,a12) Var(b12)
! 427: ...
! 428: 232 Cov(b23,a12) Cov(b23,b12) ... Var (b23) </pre>
! 429:
! 430: <ul>
! 431: <li>If mle=1 you can enter zeros. </li>
! 432: </ul>
! 433:
! 434: <blockquote>
! 435: <pre># Covariance matrix
! 436: 121 0.
! 437: 122 0. 0.
! 438: 131 0. 0. 0.
! 439: 132 0. 0. 0. 0.
! 440: 211 0. 0. 0. 0. 0.
! 441: 212 0. 0. 0. 0. 0. 0.
! 442: 231 0. 0. 0. 0. 0. 0. 0.
! 443: 232 0. 0. 0. 0. 0. 0. 0. 0.</pre>
! 444: </blockquote>
! 445:
! 446: <ul>
! 447: <li>If mle=0 you must enter a covariance matrix (usually
! 448: obtained from an earlier run).<br>
! 449: </li>
! 450: </ul>
! 451:
! 452: <h4><a name="biaspar-l"></a><font color="#FF0000">last
! 453: uncommented line</font></h4>
! 454:
! 455: <pre>agemin=70 agemax=100 bage=50 fage=100</pre>
! 456:
! 457: <p>Once we obtained the estimated parameters, the program is able
! 458: to calculated stationary prevalence, transitions probabilities
! 459: and life expectancies at any age. Choice of age ranges is useful
! 460: for extrapolation. In our data file, ages varies from age 70 to
! 461: 102. Setting bage=50 and fage=100, makes the program computing
! 462: life expectancy from age bage to age fage. As we use a model, we
! 463: can compute life expectancy on a wider age range than the age
! 464: range from the data. But the model can be rather wrong on big
! 465: intervals.</p>
! 466:
! 467: <p>Similarly, it is possible to get extrapolated stationary
! 468: prevalence by age raning from agemin to agemax. </p>
! 469:
! 470: <ul>
! 471: <li><b>agemin=</b> Minimum age for calculation of the
! 472: stationary prevalence </li>
! 473: <li><b>agemax=</b> Maximum age for calculation of the
! 474: stationary prevalence </li>
! 475: <li><b>bage=</b> Minimum age for calculation of the health
! 476: expectancies </li>
! 477: <li><b>fage=</b> Maximum ages for calculation of the health
! 478: expectancies </li>
! 479: </ul>
! 480:
! 481: <hr>
! 482:
! 483: <h2><a name="running"></a><font color="#00006A">Running Imach
! 484: with this example</font></h2>
! 485:
! 486: <p>We assume that you entered your <a href="biaspar.txt">1st_example
! 487: parameter file</a> as explained <a href="#biaspar">above</a>. To
! 488: run the program you should click on the imach.exe icon and enter
! 489: the name of the parameter file which is for example <a
! 490: href="C:\usr\imach\mle\biaspar.txt">C:\usr\imach\mle\biaspar.txt</a>
! 491: (you also can click on the biaspar.txt icon located in <br>
! 492: <a href="C:\usr\imach\mle">C:\usr\imach\mle</a> and put it with
! 493: the mouse on the imach window).<br>
! 494: </p>
! 495:
! 496: <p>The time to converge depends on the step unit that you used (1
! 497: month is cpu consuming), on the number of cases, and on the
! 498: number of variables.</p>
! 499:
! 500: <p>The program outputs many files. Most of them are files which
! 501: will be plotted for better understanding.</p>
! 502:
! 503: <hr>
! 504:
! 505: <h2><a name="output"><font color="#00006A">Output of the program
! 506: and graphs</font> </a></h2>
! 507:
! 508: <p>Once the optimization is finished, some graphics can be made
! 509: with a grapher. We use Gnuplot which is an interactive plotting
! 510: program copyrighted but freely distributed. Imach outputs the
! 511: source of a gnuplot file, named 'graph.gp', which can be directly
! 512: input into gnuplot.<br>
! 513: When the running is finished, the user should enter a caracter
! 514: for plotting and output editing. </p>
! 515:
! 516: <p>These caracters are:</p>
! 517:
! 518: <ul>
! 519: <li>'c' to start again the program from the beginning.</li>
! 520: <li>'g' to made graphics. The output graphs are in GIF format
! 521: and you have no control over which is produced. If you
! 522: want to modify the graphics or make another one, you
! 523: should modify the parameters in the file <b>graph.gp</b>
! 524: located in imach\bin. A gnuplot reference manual is
! 525: available <a
! 526: href="http://www.cs.dartmouth.edu/gnuplot/gnuplot.html">here</a>.
! 527: </li>
! 528: <li>'e' opens the <strong>index.htm</strong> file to edit the
! 529: output files and graphs. </li>
! 530: <li>'q' for exiting.</li>
! 531: </ul>
! 532:
! 533: <h5><font size="4"><strong>Results files </strong></font><br>
! 534: <br>
! 535: <font color="#EC5E5E" size="3"><strong>- </strong></font><a
! 536: name="Observed prevalence in each state"><font color="#EC5E5E"
! 537: size="3"><strong>Observed prevalence in each state</strong></font></a><font
! 538: color="#EC5E5E" size="3"><strong> (and at first pass)</strong></font><b>:
! 539: </b><a href="prbiaspar.txt"><b>prbiaspar.txt</b></a><br>
! 540: </h5>
! 541:
! 542: <p>The first line is the title and displays each field of the
! 543: file. The first column is age. The fields 2 and 6 are the
! 544: proportion of individuals in states 1 and 2 respectively as
! 545: observed during the first exam. Others fields are the numbers of
! 546: people in states 1, 2 or more. The number of columns increases if
! 547: the number of states is higher than 2.<br>
! 548: The header of the file is </p>
! 549:
! 550: <pre># Age Prev(1) N(1) N Age Prev(2) N(2) N
! 551: 70 1.00000 631 631 70 0.00000 0 631
! 552: 71 0.99681 625 627 71 0.00319 2 627
! 553: 72 0.97125 1115 1148 72 0.02875 33 1148 </pre>
! 554:
! 555: <pre># Age Prev(1) N(1) N Age Prev(2) N(2) N
! 556: 70 0.95721 604 631 70 0.04279 27 631</pre>
! 557:
! 558: <p>It means that at age 70, the prevalence in state 1 is 1.000
! 559: and in state 2 is 0.00 . At age 71 the number of individuals in
! 560: state 1 is 625 and in state 2 is 2, hence the total number of
! 561: people aged 71 is 625+2=627. <br>
! 562: </p>
! 563:
! 564: <h5><font color="#EC5E5E" size="3"><b>- Estimated parameters and
! 565: covariance matrix</b></font><b>: </b><a href="rbiaspar.txt"><b>rbiaspar.txt</b></a></h5>
! 566:
! 567: <p>This file contains all the maximisation results: </p>
! 568:
! 569: <pre> Number of iterations=47
! 570: -2 log likelihood=46553.005854373667
! 571: Estimated parameters: a12 = -12.691743 b12 = 0.095819
! 572: a13 = -7.815392 b13 = 0.031851
! 573: a21 = -1.809895 b21 = -0.030470
! 574: a23 = -7.838248 b23 = 0.039490
! 575: Covariance matrix: Var(a12) = 1.03611e-001
! 576: Var(b12) = 1.51173e-005
! 577: Var(a13) = 1.08952e-001
! 578: Var(b13) = 1.68520e-005
! 579: Var(a21) = 4.82801e-001
! 580: Var(b21) = 6.86392e-005
! 581: Var(a23) = 2.27587e-001
! 582: Var(b23) = 3.04465e-005
! 583: </pre>
! 584:
! 585: <h5><font color="#EC5E5E" size="3"><b>- Transition probabilities</b></font><b>:
! 586: </b><a href="pijrbiaspar.txt"><b>pijrbiaspar.txt</b></a></h5>
! 587:
! 588: <p>Here are the transitions probabilities Pij(x, x+nh) where nh
! 589: is a multiple of 2 years. The first column is the starting age x
! 590: (from age 50 to 100), the second is age (x+nh) and the others are
! 591: the transition probabilities p11, p12, p13, p21, p22, p23. For
! 592: example, line 5 of the file is: </p>
! 593:
! 594: <pre> 100 106 0.03286 0.23512 0.73202 0.02330 0.19210 0.78460 </pre>
! 595:
! 596: <p>and this means: </p>
! 597:
! 598: <pre>p11(100,106)=0.03286
! 599: p12(100,106)=0.23512
! 600: p13(100,106)=0.73202
! 601: p21(100,106)=0.02330
! 602: p22(100,106)=0.19210
! 603: p22(100,106)=0.78460 </pre>
! 604:
! 605: <h5><font color="#EC5E5E" size="3"><b>- </b></font><a
! 606: name="Stationary prevalence in each state"><font color="#EC5E5E"
! 607: size="3"><b>Stationary prevalence in each state</b></font></a><b>:
! 608: </b><a href="plrbiaspar.txt"><b>plrbiaspar.txt</b></a></h5>
! 609:
! 610: <pre>#Age 1-1 2-2
! 611: 70 0.92274 0.07726
! 612: 71 0.91420 0.08580
! 613: 72 0.90481 0.09519
! 614: 73 0.89453 0.10547</pre>
! 615:
! 616: <p>At age 70 the stationary prevalence is 0.92274 in state 1 and
! 617: 0.07726 in state 2. This stationary prevalence differs from
! 618: observed prevalence. Here is the point. The observed prevalence
! 619: at age 70 results from the incidence of disability, incidence of
! 620: recovery and mortality which occurred in the past of the cohort.
! 621: Stationary prevalence results from a simulation with actual
! 622: incidences and mortality (estimated from this cross-longitudinal
! 623: survey). It is the best predictive value of the prevalence in the
! 624: future if "nothing changes in the future". This is
! 625: exactly what demographers do with a Life table. Life expectancy
! 626: is the expected mean time to survive if observed mortality rates
! 627: (incidence of mortality) "remains constant" in the
! 628: future. </p>
! 629:
! 630: <h5><font color="#EC5E5E" size="3"><b>- Standard deviation of
! 631: stationary prevalence</b></font><b>: </b><a
! 632: href="vplrbiaspar.txt"><b>vplrbiaspar.txt</b></a></h5>
! 633:
! 634: <p>The stationary prevalence has to be compared with the observed
! 635: prevalence by age. But both are statistical estimates and
! 636: subjected to stochastic errors due to the size of the sample, the
! 637: design of the survey, and, for the stationary prevalence to the
! 638: model used and fitted. It is possible to compute the standard
! 639: deviation of the stationary prevalence at each age.</p>
! 640:
! 641: <h6><font color="#EC5E5E" size="3">Observed and stationary
! 642: prevalence in state (2=disable) with the confident interval</font>:<b>
! 643: vbiaspar2.gif</b></h6>
! 644:
! 645: <p><br>
! 646: This graph exhibits the stationary prevalence in state (2) with
! 647: the confidence interval in red. The green curve is the observed
! 648: prevalence (or proportion of individuals in state (2)). Without
! 649: discussing the results (it is not the purpose here), we observe
! 650: that the green curve is rather below the stationary prevalence.
! 651: It suggests an increase of the disability prevalence in the
! 652: future.</p>
! 653:
! 654: <p><img src="vbiaspar2.gif" width="400" height="300"></p>
! 655:
! 656: <h6><font color="#EC5E5E" size="3"><b>Convergence to the
! 657: stationary prevalence of disability</b></font><b>: pbiaspar1.gif</b><br>
! 658: <img src="pbiaspar1.gif" width="400" height="300"> </h6>
! 659:
! 660: <p>This graph plots the conditional transition probabilities from
! 661: an initial state (1=healthy in red at the bottom, or 2=disable in
! 662: green on top) at age <em>x </em>to the final state 2=disable<em> </em>at
! 663: age <em>x+h. </em>Conditional means at the condition to be alive
! 664: at age <em>x+h </em>which is <i>hP12x</i> + <em>hP22x</em>. The
! 665: curves <i>hP12x/(hP12x</i> + <em>hP22x) </em>and <i>hP22x/(hP12x</i>
! 666: + <em>hP22x) </em>converge with <em>h, </em>to the <em>stationary
! 667: prevalence of disability</em>. In order to get the stationary
! 668: prevalence at age 70 we should start the process at an earlier
! 669: age, i.e.50. If the disability state is defined by severe
! 670: disability criteria with only a few chance to recover, then the
! 671: incidence of recovery is low and the time to convergence is
! 672: probably longer. But we don't have experience yet.</p>
! 673:
! 674: <h5><font color="#EC5E5E" size="3"><b>- Life expectancies by age
! 675: and initial health status</b></font><b>: </b><a
! 676: href="erbiaspar.txt"><b>erbiaspar.txt</b></a></h5>
! 677:
! 678: <pre># Health expectancies
! 679: # Age 1-1 1-2 2-1 2-2
! 680: 70 10.7297 2.7809 6.3440 5.9813
! 681: 71 10.3078 2.8233 5.9295 5.9959
! 682: 72 9.8927 2.8643 5.5305 6.0033
! 683: 73 9.4848 2.9036 5.1474 6.0035 </pre>
! 684:
! 685: <pre>For example 70 10.7297 2.7809 6.3440 5.9813 means:
! 686: e11=10.7297 e12=2.7809 e21=6.3440 e22=5.9813</pre>
! 687:
! 688: <pre><img src="exbiaspar1.gif" width="400" height="300"><img
! 689: src="exbiaspar2.gif" width="400" height="300"></pre>
! 690:
! 691: <p>For example, life expectancy of a healthy individual at age 70
! 692: is 10.73 in the healthy state and 2.78 in the disability state
! 693: (=13.51 years). If he was disable at age 70, his life expectancy
! 694: will be shorter, 6.34 in the healthy state and 5.98 in the
! 695: disability state (=12.32 years). The total life expectancy is a
! 696: weighted mean of both, 13.51 and 12.32; weight is the proportion
! 697: of people disabled at age 70. In order to get a pure period index
! 698: (i.e. based only on incidences) we use the <a
! 699: href="#Stationary prevalence in each state">computed or
! 700: stationary prevalence</a> at age 70 (i.e. computed from
! 701: incidences at earlier ages) instead of the <a
! 702: href="#Observed prevalence in each state">observed prevalence</a>
! 703: (for example at first exam) (<a href="#Health expectancies">see
! 704: below</a>).</p>
! 705:
! 706: <h5><font color="#EC5E5E" size="3"><b>- Variances of life
! 707: expectancies by age and initial health status</b></font><b>: </b><a
! 708: href="vrbiaspar.txt"><b>vrbiaspar.txt</b></a></h5>
! 709:
! 710: <p>For example, the covariances of life expectancies Cov(ei,ej)
! 711: at age 50 are (line 3) </p>
! 712:
! 713: <pre> Cov(e1,e1)=0.4667 Cov(e1,e2)=0.0605=Cov(e2,e1) Cov(e2,e2)=0.0183</pre>
! 714:
! 715: <h5><font color="#EC5E5E" size="3"><b>- </b></font><a
! 716: name="Health expectancies"><font color="#EC5E5E" size="3"><b>Health
! 717: expectancies</b></font></a><font color="#EC5E5E" size="3"><b>
! 718: with standard errors in parentheses</b></font><b>: </b><a
! 719: href="trbiaspar.txt"><font face="Courier New"><b>trbiaspar.txt</b></font></a></h5>
! 720:
! 721: <pre>#Total LEs with variances: e.. (std) e.1 (std) e.2 (std) </pre>
! 722:
! 723: <pre>70 13.42 (0.18) 10.39 (0.15) 3.03 (0.10)70 13.81 (0.18) 11.28 (0.14) 2.53 (0.09) </pre>
! 724:
! 725: <p>Thus, at age 70 the total life expectancy, e..=13.42 years is
! 726: the weighted mean of e1.=13.51 and e2.=12.32 by the stationary
! 727: prevalence at age 70 which are 0.92274 in state 1 and 0.07726 in
! 728: state 2, respectively (the sum is equal to one). e.1=10.39 is the
! 729: Disability-free life expectancy at age 70 (it is again a weighted
! 730: mean of e11 and e21). e.2=3.03 is also the life expectancy at age
! 731: 70 to be spent in the disability state.</p>
! 732:
! 733: <h6><font color="#EC5E5E" size="3"><b>Total life expectancy by
! 734: age and health expectancies in states (1=healthy) and (2=disable)</b></font><b>:
! 735: ebiaspar.gif</b></h6>
! 736:
! 737: <p>This figure represents the health expectancies and the total
! 738: life expectancy with the confident interval in dashed curve. </p>
! 739:
! 740: <pre> <img src="ebiaspar.gif" width="400" height="300"></pre>
! 741:
! 742: <p>Standard deviations (obtained from the information matrix of
! 743: the model) of these quantities are very useful.
! 744: Cross-longitudinal surveys are costly and do not involve huge
! 745: samples, generally a few thousands; therefore it is very
! 746: important to have an idea of the standard deviation of our
! 747: estimates. It has been a big challenge to compute the Health
! 748: Expectancy standard deviations. Don't be confuse: life expectancy
! 749: is, as any expected value, the mean of a distribution; but here
! 750: we are not computing the standard deviation of the distribution,
! 751: but the standard deviation of the estimate of the mean.</p>
! 752:
! 753: <p>Our health expectancies estimates vary according to the sample
! 754: size (and the standard deviations give confidence intervals of
! 755: the estimate) but also according to the model fitted. Let us
! 756: explain it in more details.</p>
! 757:
! 758: <p>Choosing a model means ar least two kind of choices. First we
! 759: have to decide the number of disability states. Second we have to
! 760: design, within the logit model family, the model: variables,
! 761: covariables, confonding factors etc. to be included.</p>
! 762:
! 763: <p>More disability states we have, better is our demographical
! 764: approach of the disability process, but smaller are the number of
! 765: transitions between each state and higher is the noise in the
! 766: measurement. We do not have enough experiments of the various
! 767: models to summarize the advantages and disadvantages, but it is
! 768: important to say that even if we had huge and unbiased samples,
! 769: the total life expectancy computed from a cross-longitudinal
! 770: survey, varies with the number of states. If we define only two
! 771: states, alive or dead, we find the usual life expectancy where it
! 772: is assumed that at each age, people are at the same risk to die.
! 773: If we are differentiating the alive state into healthy and
! 774: disable, and as the mortality from the disability state is higher
! 775: than the mortality from the healthy state, we are introducing
! 776: heterogeneity in the risk of dying. The total mortality at each
! 777: age is the weighted mean of the mortality in each state by the
! 778: prevalence in each state. Therefore if the proportion of people
! 779: at each age and in each state is different from the stationary
! 780: equilibrium, there is no reason to find the same total mortality
! 781: at a particular age. Life expectancy, even if it is a very useful
! 782: tool, has a very strong hypothesis of homogeneity of the
! 783: population. Our main purpose is not to measure differential
! 784: mortality but to measure the expected time in a healthy or
! 785: disability state in order to maximise the former and minimize the
! 786: latter. But the differential in mortality complexifies the
! 787: measurement.</p>
! 788:
! 789: <p>Incidences of disability or recovery are not affected by the
! 790: number of states if these states are independant. But incidences
! 791: estimates are dependant on the specification of the model. More
! 792: covariates we added in the logit model better is the model, but
! 793: some covariates are not well measured, some are confounding
! 794: factors like in any statistical model. The procedure to "fit
! 795: the best model' is similar to logistic regression which itself is
! 796: similar to regression analysis. We haven't yet been sofar because
! 797: we also have a severe limitation which is the speed of the
! 798: convergence. On a Pentium III, 500 MHz, even the simplest model,
! 799: estimated by month on 8,000 people may take 4 hours to converge.
! 800: Also, the program is not yet a statistical package, which permits
! 801: a simple writing of the variables and the model to take into
! 802: account in the maximisation. The actual program allows only to
! 803: add simple variables without covariations, like age+sex but
! 804: without age+sex+ age*sex . This can be done from the source code
! 805: (you have to change three lines in the source code) but will
! 806: never be general enough. But what is to remember, is that
! 807: incidences or probability of change from one state to another is
! 808: affected by the variables specified into the model.</p>
! 809:
! 810: <p>Also, the age range of the people interviewed has a link with
! 811: the age range of the life expectancy which can be estimated by
! 812: extrapolation. If your sample ranges from age 70 to 95, you can
! 813: clearly estimate a life expectancy at age 70 and trust your
! 814: confidence interval which is mostly based on your sample size,
! 815: but if you want to estimate the life expectancy at age 50, you
! 816: should rely in your model, but fitting a logistic model on a age
! 817: range of 70-95 and estimating probabilties of transition out of
! 818: this age range, say at age 50 is very dangerous. At least you
! 819: should remember that the confidence interval given by the
! 820: standard deviation of the health expectancies, are under the
! 821: strong assumption that your model is the 'true model', which is
! 822: probably not the case.</p>
! 823:
! 824: <h5><font color="#EC5E5E" size="3"><b>- Copy of the parameter
! 825: file</b></font><b>: </b><a href="orbiaspar.txt"><b>orbiaspar.txt</b></a></h5>
! 826:
! 827: <p>This copy of the parameter file can be useful to re-run the
! 828: program while saving the old output files. </p>
! 829:
! 830: <hr>
! 831:
! 832: <h2><a name="example" </a><font color="#00006A">Trying an example</font></a></h2>
! 833:
! 834: <p>Since you know how to run the program, it is time to test it
! 835: on your own computer. Try for example on a parameter file named <a
! 836: href="file://../mytry/imachpar.txt">imachpar.txt</a> which is a
! 837: copy of <font size="2" face="Courier New">mypar.txt</font>
! 838: included in the subdirectory of imach, <font size="2"
! 839: face="Courier New">mytry</font>. Edit it to change the name of
! 840: the data file to <font size="2" face="Courier New">..\data\mydata.txt</font>
! 841: if you don't want to copy it on the same directory. The file <font
! 842: face="Courier New">mydata.txt</font> is a smaller file of 3,000
! 843: people but still with 4 waves. </p>
! 844:
! 845: <p>Click on the imach.exe icon to open a window. Answer to the
! 846: question:'<strong>Enter the parameter file name:'</strong></p>
! 847:
! 848: <table border="1">
! 849: <tr>
! 850: <td width="100%"><strong>IMACH, Version 0.63</strong><p><strong>Enter
! 851: the parameter file name: ..\mytry\imachpar.txt</strong></p>
! 852: </td>
! 853: </tr>
! 854: </table>
! 855:
! 856: <p>Most of the data files or image files generated, will use the
! 857: 'imachpar' string into their name. The running time is about 2-3
! 858: minutes on a Pentium III. If the execution worked correctly, the
! 859: outputs files are created in the current directory, and should be
! 860: the same as the mypar files initially included in the directory <font
! 861: size="2" face="Courier New">mytry</font>.</p>
! 862:
! 863: <ul>
! 864: <li><pre><u>Output on the screen</u> The output screen looks like <a
! 865: href="imachrun.LOG">this Log file</a>
! 866: #
! 867:
! 868: title=MLE datafile=..\data\mydata.txt lastobs=3000 firstpass=1 lastpass=3
! 869: ftol=1.000000e-008 stepm=24 ncov=2 nlstate=2 ndeath=1 maxwav=4 mle=1 weight=0</pre>
! 870: </li>
! 871: <li><pre>Total number of individuals= 2965, Agemin = 70.00, Agemax= 100.92
! 872:
! 873: Warning, no any valid information for:126 line=126
! 874: Warning, no any valid information for:2307 line=2307
! 875: Delay (in months) between two waves Min=21 Max=51 Mean=24.495826
! 876: <font face="Times New Roman">These lines give some warnings on the data file and also some raw statistics on frequencies of transitions.</font>
! 877: Age 70 1.=230 loss[1]=3.5% 2.=16 loss[2]=12.5% 1.=222 prev[1]=94.1% 2.=14
! 878: prev[2]=5.9% 1-1=8 11=200 12=7 13=15 2-1=2 21=6 22=7 23=1
! 879: Age 102 1.=0 loss[1]=NaNQ% 2.=0 loss[2]=NaNQ% 1.=0 prev[1]=NaNQ% 2.=0 </pre>
! 880: </li>
! 881: </ul>
! 882:
! 883: <p> </p>
! 884:
! 885: <ul>
! 886: <li>Maximisation with the Powell algorithm. 8 directions are
! 887: given corresponding to the 8 parameters. this can be
! 888: rather long to get convergence.<br>
! 889: <font size="1" face="Courier New"><br>
! 890: Powell iter=1 -2*LL=11531.405658264877 1 0.000000000000 2
! 891: 0.000000000000 3<br>
! 892: 0.000000000000 4 0.000000000000 5 0.000000000000 6
! 893: 0.000000000000 7 <br>
! 894: 0.000000000000 8 0.000000000000<br>
! 895: 1..........2.................3..........4.................5.........<br>
! 896: 6................7........8...............<br>
! 897: Powell iter=23 -2*LL=6744.954108371555 1 -12.967632334283
! 898: <br>
! 899: 2 0.135136681033 3 -7.402109728262 4 0.067844593326 <br>
! 900: 5 -0.673601538129 6 -0.006615504377 7 -5.051341616718 <br>
! 901: 8 0.051272038506<br>
! 902: 1..............2...........3..............4...........<br>
! 903: 5..........6................7...........8.........<br>
! 904: #Number of iterations = 23, -2 Log likelihood =
! 905: 6744.954042573691<br>
! 906: # Parameters<br>
! 907: 12 -12.966061 0.135117 <br>
! 908: 13 -7.401109 0.067831 <br>
! 909: 21 -0.672648 -0.006627 <br>
! 910: 23 -5.051297 0.051271 </font><br>
! 911: </li>
! 912: <li><pre><font size="2">Calculation of the hessian matrix. Wait...
! 913: 12345678.12.13.14.15.16.17.18.23.24.25.26.27.28.34.35.36.37.38.45.46.47.48.56.57.58.67.68.78
! 914:
! 915: Inverting the hessian to get the covariance matrix. Wait...
! 916:
! 917: #Hessian matrix#
! 918: 3.344e+002 2.708e+004 -4.586e+001 -3.806e+003 -1.577e+000 -1.313e+002 3.914e-001 3.166e+001
! 919: 2.708e+004 2.204e+006 -3.805e+003 -3.174e+005 -1.303e+002 -1.091e+004 2.967e+001 2.399e+003
! 920: -4.586e+001 -3.805e+003 4.044e+002 3.197e+004 2.431e-002 1.995e+000 1.783e-001 1.486e+001
! 921: -3.806e+003 -3.174e+005 3.197e+004 2.541e+006 2.436e+000 2.051e+002 1.483e+001 1.244e+003
! 922: -1.577e+000 -1.303e+002 2.431e-002 2.436e+000 1.093e+002 8.979e+003 -3.402e+001 -2.843e+003
! 923: -1.313e+002 -1.091e+004 1.995e+000 2.051e+002 8.979e+003 7.420e+005 -2.842e+003 -2.388e+005
! 924: 3.914e-001 2.967e+001 1.783e-001 1.483e+001 -3.402e+001 -2.842e+003 1.494e+002 1.251e+004
! 925: 3.166e+001 2.399e+003 1.486e+001 1.244e+003 -2.843e+003 -2.388e+005 1.251e+004 1.053e+006
! 926: # Scales
! 927: 12 1.00000e-004 1.00000e-006
! 928: 13 1.00000e-004 1.00000e-006
! 929: 21 1.00000e-003 1.00000e-005
! 930: 23 1.00000e-004 1.00000e-005
! 931: # Covariance
! 932: 1 5.90661e-001
! 933: 2 -7.26732e-003 8.98810e-005
! 934: 3 8.80177e-002 -1.12706e-003 5.15824e-001
! 935: 4 -1.13082e-003 1.45267e-005 -6.50070e-003 8.23270e-005
! 936: 5 9.31265e-003 -1.16106e-004 6.00210e-004 -8.04151e-006 1.75753e+000
! 937: 6 -1.15664e-004 1.44850e-006 -7.79995e-006 1.04770e-007 -2.12929e-002 2.59422e-004
! 938: 7 1.35103e-003 -1.75392e-005 -6.38237e-004 7.85424e-006 4.02601e-001 -4.86776e-003 1.32682e+000
! 939: 8 -1.82421e-005 2.35811e-007 7.75503e-006 -9.58687e-008 -4.86589e-003 5.91641e-005 -1.57767e-002 1.88622e-004
! 940: # agemin agemax for lifexpectancy, bage fage (if mle==0 ie no data nor Max likelihood).
! 941:
! 942:
! 943: agemin=70 agemax=100 bage=50 fage=100
! 944: Computing prevalence limit: result on file 'plrmypar.txt'
! 945: Computing pij: result on file 'pijrmypar.txt'
! 946: Computing Health Expectancies: result on file 'ermypar.txt'
! 947: Computing Variance-covariance of DFLEs: file 'vrmypar.txt'
! 948: Computing Total LEs with variances: file 'trmypar.txt'
! 949: Computing Variance-covariance of Prevalence limit: file 'vplrmypar.txt'
! 950: End of Imach
! 951: </font></pre>
! 952: </li>
! 953: </ul>
! 954:
! 955: <p><font size="3">Once the running is finished, the program
! 956: requires a caracter:</font></p>
! 957:
! 958: <table border="1">
! 959: <tr>
! 960: <td width="100%"><strong>Type g for plotting (available
! 961: if mle=1), e to edit output files, c to start again,</strong><p><strong>and
! 962: q for exiting:</strong></p>
! 963: </td>
! 964: </tr>
! 965: </table>
! 966:
! 967: <p><font size="3">First you should enter <strong>g</strong> to
! 968: make the figures and then you can edit all the results by typing <strong>e</strong>.
! 969: </font></p>
! 970:
! 971: <ul>
! 972: <li><u>Outputs files</u> <br>
! 973: - index.htm, this file is the master file on which you
! 974: should click first.<br>
! 975: - Observed prevalence in each state: <a
! 976: href="..\mytry\prmypar.txt">mypar.txt</a> <br>
! 977: - Estimated parameters and the covariance matrix: <a
! 978: href="..\mytry\rmypar.txt">rmypar.txt</a> <br>
! 979: - Stationary prevalence in each state: <a
! 980: href="..\mytry\plrmypar.txt">plrmypar.txt</a> <br>
! 981: - Transition probabilities: <a
! 982: href="..\mytry\pijrmypar.txt">pijrmypar.txt</a> <br>
! 983: - Copy of the parameter file: <a
! 984: href="..\mytry\ormypar.txt">ormypar.txt</a> <br>
! 985: - Life expectancies by age and initial health status: <a
! 986: href="..\mytry\ermypar.txt">ermypar.txt</a> <br>
! 987: - Variances of life expectancies by age and initial
! 988: health status: <a href="..\mytry\vrmypar.txt">vrmypar.txt</a>
! 989: <br>
! 990: - Health expectancies with their variances: <a
! 991: href="..\mytry\trmypar.txt">trmypar.txt</a> <br>
! 992: - Standard deviation of stationary prevalence: <a
! 993: href="..\mytry\vplrmypar.txt">vplrmypar.txt</a> <br>
! 994: <br>
! 995: </li>
! 996: <li><u>Graphs</u> <br>
! 997: <br>
! 998: -<a href="..\mytry\vmypar1.gif">Observed and stationary
! 999: prevalence in state (1) with the confident interval</a> <br>
! 1000: -<a href="..\mytry\vmypar2.gif">Observed and stationary
! 1001: prevalence in state (2) with the confident interval</a> <br>
! 1002: -<a href="..\mytry\exmypar1.gif">Health life expectancies
! 1003: by age and initial health state (1)</a> <br>
! 1004: -<a href="..\mytry\exmypar2.gif">Health life expectancies
! 1005: by age and initial health state (2)</a> <br>
! 1006: -<a href="..\mytry\emypar.gif">Total life expectancy by
! 1007: age and health expectancies in states (1) and (2).</a> </li>
! 1008: </ul>
! 1009:
! 1010: <p>This software have been partly granted by <a
! 1011: href="http://euroreves.ined.fr">Euro-REVES</a>, a concerted
! 1012: action from the European Union. It will be copyrighted
! 1013: identically to a GNU software product, i.e. program and software
! 1014: can be distributed freely for non commercial use. Sources are not
! 1015: widely distributed today. You can get them by asking us with a
! 1016: simple justification (name, email, institute) <a
! 1017: href="mailto:brouard@ined.fr">mailto:brouard@ined.fr</a> and <a
! 1018: href="mailto:lievre@ined.fr">mailto:lievre@ined.fr</a> .</p>
! 1019:
! 1020: <p>Latest version (0.63 of 16 march 2000) can be accessed at <a
! 1021: href="http://euroeves.ined.fr/imach">http://euroreves.ined.fr/imach</a><br>
! 1022: </p>
! 1023: </body>
! 1024: </html>
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