--- imach096d/src/imach.c 2002/03/01 17:56:23 1.28 +++ imach096d/src/imach.c 2002/03/08 16:17:18 1.30 @@ -1,4 +1,4 @@ -/* $Id: imach.c,v 1.28 2002/03/01 17:56:23 lievre Exp $ +/* $Id: imach.c,v 1.30 2002/03/08 16:17:18 lievre Exp $ Interpolated Markov Chain Short summary of the programme: @@ -1443,7 +1443,7 @@ void concatwav(int wav[], int **dh, int if (j >= jmax) jmax=j; if (j <= jmin) jmin=j; sum=sum+j; - /* if (j<10) printf("j=%d num=%d ",j,i); */ + /*if (j<0) printf("j=%d num=%d \n",j,i); */ } } else{ @@ -1451,7 +1451,7 @@ void concatwav(int wav[], int **dh, int k=k+1; if (j >= jmax) jmax=j; else if (j <= jmin)jmin=j; - /* if (j<10) printf("j=%d jmin=%d num=%d ",j,jmin,i); */ + /* if (j<10) printf("j=%d jmin=%d num=%d ",j,jmin,i); */ sum=sum+j; } jk= j/stepm; @@ -1546,26 +1546,29 @@ void evsij(char fileres[], double ***eij /* nhstepm age range expressed in number of stepm */ nhstepm=(int) rint((agelim-age)*YEARM/stepm); /* Typically if 20 years = 20*12/6=40 stepm */ - if (stepm >= YEARM) hstepm=1; + /*if (stepm >= YEARM) hstepm=1;*/ +hstepm=1; nhstepm = nhstepm/hstepm;/* Expressed in hstepm, typically 40/4=10 */ p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); /* Computed by stepm unit matrices, product of hstepm matrices, stored in an array of nhstepm length: nhstepm=10, hstepm=4, stepm=6 months */ hpxij(p3mat,nhstepm,age,hstepm,x,nlstate,stepm,oldm, savm, ij); - - +hf=stepm/YEARM; +/*printf("stepm=%d nhstepm=%d hstepm=%d age=%lf ",stepm, nhstepm, hstepm, age);*/ for(i=1; i<=nlstate;i++) for(j=1; j<=nlstate;j++) - for (h=0, eij[i][j][(int)age]=0; h<=nhstepm; h++){ - eij[i][j][(int)age] +=p3mat[i][j][h]; + for (h=0, eij[i][j][(int)age]=0; h<=nhstepm-1; h++){ + eij[i][j][(int)age] +=hf*(p3mat[i][j][h]+p3mat[i][j][h+1])/2.0; } - hf=1; - if (stepm >= YEARM) hf=stepm/YEARM; - fprintf(ficreseij,"%.0f",age ); + /* hf=1; + if (stepm >= YEARM) hf=stepm/YEARM;*/ +hf=stepm/YEARM; + + fprintf(ficreseij,"%3.0f",age ); for(i=1; i<=nlstate;i++) for(j=1; j<=nlstate;j++){ - fprintf(ficreseij," %.4f", hf*eij[i][j][(int)age]); + fprintf(ficreseij," %9.4f", eij[i][j][(int)age]); } fprintf(ficreseij,"\n"); free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); @@ -1882,7 +1885,7 @@ fclose(ficresprob); } /******************* Printing html file ***********/ -void printinghtml(char fileres[], char title[], char datafile[], int firstpass, int lastpass, int stepm, int weightopt, char model[],int imx,int jmin, int jmax, double jmeanint,char optionfile[],char optionfilehtm[] ){ +void printinghtml(char fileres[], char title[], char datafile[], int firstpass, int lastpass, int stepm, int weightopt, char model[],int imx,int jmin, int jmax, double jmeanint,char optionfile[],char optionfilehtm[],char rfileres[] ){ int jj1, k1, i1, cpt; FILE *fichtm; /*char optionfilehtm[FILENAMELENGTH];*/ @@ -1893,7 +1896,7 @@ void printinghtml(char fileres[], char t printf("Problem with %s \n",optionfilehtm), exit(0); } - fprintf(fichtm,"
"); @@ -2424,7 +2427,7 @@ int main(int argc, char *argv[]) char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH]; char optionfilext[10], optionfilefiname[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH], optionfilegnuplot[FILENAMELENGTH], plotcmd[FILENAMELENGTH]; - char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH]; + char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], rfileres[FILENAMELENGTH]; char filerest[FILENAMELENGTH]; char fileregp[FILENAMELENGTH]; @@ -2456,7 +2459,7 @@ int main(int argc, char *argv[]) double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2; - char version[80]="Imach version 0.7, February 2002, INED-EUROREVES "; + char version[80]="Imach version 0.71, February 2002, INED-EUROREVES "; char *alph[]={"a","a","b","c","d","e"}, str[4]; @@ -2624,12 +2627,17 @@ while((c=getc(ficpar))=='#' && c!= EOF){ printf("\n"); - /*-------- data file ----------*/ - if((ficres =fopen(fileres,"w"))==NULL) { - printf("Problem with resultfile: %s\n", fileres);goto end; + /*-------- Rewriting paramater file ----------*/ + strcpy(rfileres,"r"); /* "Rparameterfile */ + strcat(rfileres,optionfilefiname); /* Parameter file first name*/ + strcat(rfileres,"."); /* */ + strcat(rfileres,optionfilext); /* Other files have txt extension */ + if((ficres =fopen(rfileres,"w"))==NULL) { + printf("Problem writing new parameter file: %s\n", fileres);goto end; } fprintf(ficres,"#%s\n",version); + /*-------- data file ----------*/ if((fic=fopen(datafile,"r"))==NULL) { printf("Problem with datafile: %s\n", datafile);goto end; } @@ -2902,7 +2910,7 @@ printf("Total number of individuals= %d, } /*--------- results files --------------*/ - fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model); + fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle= 0 weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, weightopt,model); jk=1; @@ -3057,7 +3065,7 @@ while((c=getc(ficpar))=='#' && c!= EOF){ /*--------- index.htm --------*/ - printinghtml(fileres,title,datafile, firstpass, lastpass, stepm, weightopt,model,imx,jmin,jmax,jmean,optionfile,optionfilehtm); + printinghtml(fileres,title,datafile, firstpass, lastpass, stepm, weightopt,model,imx,jmin,jmax,jmean,optionfile,optionfilehtm,rfileres); /*--------------- Prevalence limit --------------*/ @@ -3160,7 +3168,7 @@ while((c=getc(ficpar))=='#' && c!= EOF){ /*---------- Forecasting ------------------*/ - if(stepm == 1) { + if((stepm == 1) && (model==".")){ prevforecast(fileres, anproj1,mproj1,jproj1, agemin,agemax, dateprev1, dateprev2,mobilav, agedeb, fage, popforecast, popfile, anproj2,p, i1); if (popforecast==1) populforecast(fileres, anpyram,mpyram,jpyram, agemin,agemax, dateprev1, dateprev2,mobilav, agedeb, fage, popforecast, popfile, anpyram1,p, i1); free_matrix(mint,1,maxwav,1,n);